/[MITgcm]/MITgcm_contrib/gael/profilesMatlabProcessing/profiles_process_init.m
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revision 1.2 by gforget, Wed Nov 3 19:59:54 2010 UTC revision 1.14 by gforget, Mon Jul 28 19:34:16 2014 UTC
# Line 1  Line 1 
1    clear all
2    
3  global MITprof_verbose; MITprof_verbose=1;  global MITprof_verbose; %to print notes to screen
4    if isempty(MITprof_verbose); MITprof_verbose=2; end;
5    
6    if MITprof_verbose;
7    fprintf('creating database directory with reference datasets\n');
8    fprintf('===============================\n\n')
9    end;
10    if ~exist('climatology','dir'), status=mkdir('climatology'); end
11    gcmfaces_global;
12    eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
13    eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
14    
15    if MITprof_verbose;
16  fprintf('adding directories to your path\n');  fprintf('adding directories to your path\n');
17  fprintf('===============================\n\n')  fprintf('===============================\n\n')
18  mydir=[pwd '/'];  end;
19  eval(['addpath ' mydir 'profiles_IO_v2/;']);  MITprof_global;
 eval(['addpath ' mydir 'profiles_IO_external/;']);  
 eval(['addpath ' mydir 'profiles_misc/;']);  
 eval(['addpath ' mydir 'profiles_process_main_v2/;']);  
 eval(['addpath ' mydir 'profiles_genericgrid/;']);  
20    
21            
22    if MITprof_verbose;
23    fprintf('\ngenerating .mat files for reference grid and climatology\n')
24    fprintf('========================================\n\n')
25    end;
26    profiles_prep_load_fields(1);
27    
28    fprintf('\n\n basic MITprof test: started... \n');
29    
30  fprintf('running main program on sample data sets\n')  if MITprof_verbose;
31    fprintf('\nrunning main program on sample data sets\n')
32  fprintf('========================================\n\n')  fprintf('========================================\n\n')
33    end;
 %remove old results:  
 !\rm profiles_samples/wod05_sample/wod05_CTD_1990s.nc;  
 !\rm profiles_samples/argo_sample/argo_indian.nc;  
34    
35  %select the data source (and specific params) => wod05 sample  %select the data source (and specific params) => wod05 sample
36  dataset=profiles_prep_select('wod05','90CTD');  dataset=profiles_prep_select('wod05','90CTD');
37  %process it  %process it
38  profiles_prep_main;  profiles_prep_main(dataset);
39  %  %
40  fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc \n\n']);  fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
41    
42  %select the data source (and specific params) => argo sample  %select the data source (and specific params) => argo sample
43  dataset=profiles_prep_select('argo','indian');  dataset=profiles_prep_select('argo','indian');
44  %process it  %process it
45  profiles_prep_main;  profiles_prep_main(dataset);
46  %  %
47  fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc \n\n']);  fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
48    
49    %select the data source (and specific params) => odv sample
50    dataset=profiles_prep_select('odv','ODVcompact_sample');
51    %process it
52    profiles_prep_main(dataset);
53    %
54    fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
55    
56    fprintf('\n basic MITprof test: completed. \n');
57    
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