gael/profilesMatlabProcessing/profiles_process_init.m

clear all

global MITprof_verbose; %to print notes to screen
if isempty(MITprof_verbose); MITprof_verbose=2; end;

if MITprof_verbose;
fprintf('generating database directory with reference datasets\n');
fprintf('===============================\n\n')
end;
status=mkdir('climatology');
gcmfaces_path;gcmfaces_dir=mydir;
eval(['!cp -r ' gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
eval(['!cp ' gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
profiles_prep_load_fields(1);

if MITprof_verbose;
fprintf('adding directories to your path\n');
fprintf('===============================\n\n')
end;

global mydir; mydir=[pwd '/'];
fid=fopen([mydir 'MITprof_path.m'],'wt');
aa=sprintf(['global mydir; mydir=''' mydir ''';\n']);
aa=sprintf([aa 'addpath ' mydir ';\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_IO_v2/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_IO_external/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_misc/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_process_main_v2/;\n']);
aa=sprintf([aa 'addpath ' mydir 'profiles_stats/\n;']);
aa=sprintf([aa 'addpath ' mydir 'profiles_devel/\n;']);
aa=sprintf([aa 'addpath ' mydir 'database/\n;']);
eval(aa);
fid=fopen([mydir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);

        
fprintf('\n\n basic MITprof test: started... \n');

if MITprof_verbose;
fprintf('\nrunning main program on sample data sets\n')
fprintf('========================================\n\n')
end;

%select the data source (and specific params) => wod05 sample
dataset=profiles_prep_select('wod05','90CTD');
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

%select the data source (and specific params) => argo sample
dataset=profiles_prep_select('argo','indian'); 
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

%select the data source (and specific params) => odv sample
dataset=profiles_prep_select('odv','ODVcompact_sample');
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

fprintf('\n basic MITprof test: completed. \n');

1	roquet	1.8	clear all
2	gforget	1.1
3	gforget	1.4	global MITprof_verbose; %to print notes to screen
4			if isempty(MITprof_verbose); MITprof_verbose=2; end;
5	gforget	1.2
6	gforget	1.4	if MITprof_verbose;
7	roquet	1.8	fprintf('generating database directory with reference datasets\n');
8			fprintf('===============================\n\n')
9			end;
10			status=mkdir('climatology');
11			gcmfaces_path;gcmfaces_dir=mydir;
12	roquet	1.9	eval(['!cp -r ' gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
13	roquet	1.8	eval(['!cp ' gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
14			profiles_prep_load_fields(1);
15
16			if MITprof_verbose;
17	gforget	1.1	fprintf('adding directories to your path\n');
18	gforget	1.2	fprintf('===============================\n\n')
19	gforget	1.4	end;
20	gforget	1.1
21	gforget	1.4	global mydir; mydir=[pwd '/'];
22			fid=fopen([mydir 'MITprof_path.m'],'wt');
23			aa=sprintf(['global mydir; mydir=''' mydir ''';\n']);
24			aa=sprintf([aa 'addpath ' mydir ';\n']);
25			aa=sprintf([aa 'addpath ' mydir 'profiles_IO_v2/;\n']);
26			aa=sprintf([aa 'addpath ' mydir 'profiles_IO_external/;\n']);
27			aa=sprintf([aa 'addpath ' mydir 'profiles_misc/;\n']);
28			aa=sprintf([aa 'addpath ' mydir 'profiles_process_main_v2/;\n']);
29	gforget	1.6	aa=sprintf([aa 'addpath ' mydir 'profiles_stats/\n;']);
30	gforget	1.5	aa=sprintf([aa 'addpath ' mydir 'profiles_devel/\n;']);
31	roquet	1.8	aa=sprintf([aa 'addpath ' mydir 'database/\n;']);
32	gforget	1.4	eval(aa);
33			fid=fopen([mydir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);
34	gforget	1.1
35	gforget	1.4
36			fprintf('\n\n basic MITprof test: started... \n');
37	gforget	1.1
38	gforget	1.4	if MITprof_verbose;
39			fprintf('\nrunning main program on sample data sets\n')
40	gforget	1.2	fprintf('========================================\n\n')
41	gforget	1.4	end;
42	gforget	1.1
43			%select the data source (and specific params) => wod05 sample
44			dataset=profiles_prep_select('wod05','90CTD');
45			%process it
46	roquet	1.7	profiles_prep_main(dataset);
47	gforget	1.1	%
48	gforget	1.4	fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
49	gforget	1.1
50			%select the data source (and specific params) => argo sample
51			dataset=profiles_prep_select('argo','indian');
52			%process it
53	roquet	1.7	profiles_prep_main(dataset);
54	gforget	1.1	%
55	gforget	1.4	fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
56	gforget	1.1
57	roquet	1.7	%select the data source (and specific params) => odv sample
58			dataset=profiles_prep_select('odv','ODVcompact_sample');
59			%process it
60			profiles_prep_main(dataset);
61			%
62			fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
63
64	gforget	1.4	fprintf('\n basic MITprof test: completed. \n');
65	gforget	1.1