gael/profilesMatlabProcessing/profiles_process_init.m

clear all

global MITprof_verbose; %to print notes to screen
if isempty(MITprof_verbose); MITprof_verbose=2; end;

if MITprof_verbose;
fprintf('creating database directory with reference datasets\n');
fprintf('===============================\n\n')
end;
if ~exist('climatology','dir'), status=mkdir('climatology'); end
gcmfaces_global;
eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);

if MITprof_verbose;
fprintf('adding directories to your path\n');
fprintf('===============================\n\n')
end;

global MITprof_dir; MITprof_dir=[pwd '/'];
fid=fopen([MITprof_dir 'MITprof_path.m'],'wt');
aa=sprintf(['global MITprof_dir; MITprof_dir=''' MITprof_dir ''';\n']);
aa=sprintf([aa 'addpath ' MITprof_dir ';\n']);
aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_IO_v2/;\n']);
aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_IO_external/;\n']);
aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_misc/;\n']);
aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_process_main_v2/;\n']);
aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_stats/;\n']);
aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_devel/;\n']);
aa=sprintf([aa 'addpath ' MITprof_dir 'climatology/;\n']);
eval(aa);
fid=fopen([MITprof_dir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);

        
if MITprof_verbose;
fprintf('\ngenerating .mat files for reference grid and climatology\n')
fprintf('========================================\n\n')
end;
profiles_prep_load_fields(1);

fprintf('\n\n basic MITprof test: started... \n');

if MITprof_verbose;
fprintf('\nrunning main program on sample data sets\n')
fprintf('========================================\n\n')
end;

%select the data source (and specific params) => wod05 sample
dataset=profiles_prep_select('wod05','90CTD');
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

%select the data source (and specific params) => argo sample
dataset=profiles_prep_select('argo','indian'); 
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

%select the data source (and specific params) => odv sample
dataset=profiles_prep_select('odv','ODVcompact_sample');
%process it
profiles_prep_main(dataset);
%
fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);

fprintf('\n basic MITprof test: completed. \n');

1	roquet	1.8	clear all
2	gforget	1.1
3	gforget	1.4	global MITprof_verbose; %to print notes to screen
4			if isempty(MITprof_verbose); MITprof_verbose=2; end;
5	gforget	1.2
6	gforget	1.4	if MITprof_verbose;
7	roquet	1.10	fprintf('creating database directory with reference datasets\n');
8	roquet	1.8	fprintf('===============================\n\n')
9			end;
10	roquet	1.10	if ~exist('climatology','dir'), status=mkdir('climatology'); end
11	gforget	1.12	gcmfaces_global;
12			eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/GRIDv4 climatology/']);
13			eval(['!ln -s ' myenv.gcmfaces_dir 'sample_input/OCCAetcONv4GRID/* climatology/']);
14	roquet	1.8
15			if MITprof_verbose;
16	gforget	1.1	fprintf('adding directories to your path\n');
17	gforget	1.2	fprintf('===============================\n\n')
18	gforget	1.4	end;
19	gforget	1.1
20	gforget	1.11	global MITprof_dir; MITprof_dir=[pwd '/'];
21			fid=fopen([MITprof_dir 'MITprof_path.m'],'wt');
22			aa=sprintf(['global MITprof_dir; MITprof_dir=''' MITprof_dir ''';\n']);
23			aa=sprintf([aa 'addpath ' MITprof_dir ';\n']);
24			aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_IO_v2/;\n']);
25			aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_IO_external/;\n']);
26			aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_misc/;\n']);
27			aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_process_main_v2/;\n']);
28			aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_stats/;\n']);
29			aa=sprintf([aa 'addpath ' MITprof_dir 'profiles_devel/;\n']);
30			aa=sprintf([aa 'addpath ' MITprof_dir 'climatology/;\n']);
31	gforget	1.4	eval(aa);
32	gforget	1.11	fid=fopen([MITprof_dir 'MITprof_path.m'],'wt'); fprintf(fid,aa); fclose(fid);
33	gforget	1.1
34	gforget	1.4
35	roquet	1.10	if MITprof_verbose;
36			fprintf('\ngenerating .mat files for reference grid and climatology\n')
37			fprintf('========================================\n\n')
38			end;
39			profiles_prep_load_fields(1);
40
41	gforget	1.4	fprintf('\n\n basic MITprof test: started... \n');
42	gforget	1.1
43	gforget	1.4	if MITprof_verbose;
44			fprintf('\nrunning main program on sample data sets\n')
45	gforget	1.2	fprintf('========================================\n\n')
46	gforget	1.4	end;
47	gforget	1.1
48			%select the data source (and specific params) => wod05 sample
49			dataset=profiles_prep_select('wod05','90CTD');
50			%process it
51	roquet	1.7	profiles_prep_main(dataset);
52	gforget	1.1	%
53	gforget	1.4	fprintf(['\n\n wod05 sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
54	gforget	1.1
55			%select the data source (and specific params) => argo sample
56			dataset=profiles_prep_select('argo','indian');
57			%process it
58	roquet	1.7	profiles_prep_main(dataset);
59	gforget	1.1	%
60	gforget	1.4	fprintf(['\n\nargo sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
61	gforget	1.1
62	roquet	1.7	%select the data source (and specific params) => odv sample
63			dataset=profiles_prep_select('odv','ODVcompact_sample');
64			%process it
65			profiles_prep_main(dataset);
66			%
67			fprintf(['\n\nodv sample -- done -- ' dataset.dirOut dataset.fileOut '.nc was created \n\n']);
68
69	gforget	1.4	fprintf('\n basic MITprof test: completed. \n');
70	gforget	1.1