profilesMatlabProcessing/profiles_misc/MITprof_struct.m

function [MITprof]=MITprof_struct(nProf,dataset,varargin);
%   [MITprof]=MITprof_struct;
%   create an empty struct variable using the format MITprof
%       nProf: number of profiles
%       prof_depth: list of depth levels
%       list_var: specify name of created fields
%
%   list of fields always created:
%       prof_depth      [nDepth x 1]
%       prof_descr      {nProf x 1}
%       prof_date       [nProf x 1]
%       prof_YYYYMMDD   [nProf x 1]
%       prof_HHMMSS     [nProf x 1]
%       prof_lon        [nProf x 1]
%       prof_lat        [nProf x 1]
%       prof_basin      [nProf x 1]
%       prof_point      [nProf x 1]
%       np, nr, list_descr, nd
%
%   list of fields created by default, if list_var not specified
%       prof_T, prof_Tflag, prof_Terr, prof_Tweight, prof_Testim
%       prof_S, prof_Sflag, prof_Serr, prof_Sweight, prof_Sestim
%           array size: [nProf x nLev]

prof_depth=dataset.z_std;

if isfield(dataset,'var_tmp');
    var_tmp=dataset.var_tmp;
    var_out=dataset.var_out;
    jj=find(~strcmp(var_tmp,'z'));
    var_tmp={var_tmp{jj}};
    var_out={var_out{jj}};
    list_vars={};
    for ii=1:length(var_tmp);
        list_vars={list_vars{:},['prof_' var_out{ii} ]};
        list_vars={list_vars{:},['prof_' var_out{ii} 'weight']};
        list_vars={list_vars{:},['prof_' var_out{ii} 'estim']};
        list_vars={list_vars{:},['prof_' var_out{ii} 'err']};
        list_vars={list_vars{:},['prof_' var_out{ii} 'flag']};
    end;
else;
    list_vars={'prof_T','prof_Tweight','prof_Testim','prof_Terr','prof_Tflag',...
        'prof_S','prof_Sweight','prof_Sestim','prof_Serr','prof_Sflag'};
    if ~strcmp(dataset.coord,'depth');
        list_vars={list_vars{:},'prof_D','prof_Destim'};
    end;
end;
if nargin>2,
    list_vars=varargin{1};
end


MITprof=[];

nLev=length(prof_depth);
prof_depth=reshape(prof_depth,length(prof_depth),1);
MITprof.prof_depth=prof_depth;

MITprof.prof_date=zeros(nProf,1);
MITprof.prof_YYYYMMDD=zeros(nProf,1);
MITprof.prof_HHMMSS=zeros(nProf,1);
MITprof.prof_lon=zeros(nProf,1);
MITprof.prof_lat=zeros(nProf,1);
MITprof.prof_basin=zeros(nProf,1);
MITprof.prof_point=zeros(nProf,1);

MITprof.prof_descr=cell(nProf,1);

for ii=1:length(list_vars),
    MITprof=setfield(MITprof,list_vars{ii},zeros(nProf,nLev));
end

MITprof.np=nProf;
MITprof.nr=nLev;
MITprof.nd=0;
MITprof.list_descr={};


1	function [MITprof]=MITprof_struct(nProf,dataset,varargin);
2	% [MITprof]=MITprof_struct;
3	% create an empty struct variable using the format MITprof
4	% nProf: number of profiles
5	% prof_depth: list of depth levels
6	% list_var: specify name of created fields
7	%
8	% list of fields always created:
9	% prof_depth [nDepth x 1]
10	% prof_descr {nProf x 1}
11	% prof_date [nProf x 1]
12	% prof_YYYYMMDD [nProf x 1]
13	% prof_HHMMSS [nProf x 1]
14	% prof_lon [nProf x 1]
15	% prof_lat [nProf x 1]
16	% prof_basin [nProf x 1]
17	% prof_point [nProf x 1]
18	% np, nr, list_descr, nd
19	%
20	% list of fields created by default, if list_var not specified
21	% prof_T, prof_Tflag, prof_Terr, prof_Tweight, prof_Testim
22	% prof_S, prof_Sflag, prof_Serr, prof_Sweight, prof_Sestim
23	% array size: [nProf x nLev]
24
25	prof_depth=dataset.z_std;
26
27	if isfield(dataset,'var_tmp');
28	var_tmp=dataset.var_tmp;
29	var_out=dataset.var_out;
30	jj=find(~strcmp(var_tmp,'z'));
31	var_tmp={var_tmp{jj}};
32	var_out={var_out{jj}};
33	list_vars={};
34	for ii=1:length(var_tmp);
35	list_vars={list_vars{:},['prof_' var_out{ii} ]};
36	list_vars={list_vars{:},['prof_' var_out{ii} 'weight']};
37	list_vars={list_vars{:},['prof_' var_out{ii} 'estim']};
38	list_vars={list_vars{:},['prof_' var_out{ii} 'err']};
39	list_vars={list_vars{:},['prof_' var_out{ii} 'flag']};
40	end;
41	else;
42	list_vars={'prof_T','prof_Tweight','prof_Testim','prof_Terr','prof_Tflag',...
43	'prof_S','prof_Sweight','prof_Sestim','prof_Serr','prof_Sflag'};
44	if ~strcmp(dataset.coord,'depth');
45	list_vars={list_vars{:},'prof_D','prof_Destim'};
46	end;
47	end;
48	if nargin>2,
49	list_vars=varargin{1};
50	end
51
52
53	MITprof=[];
54
55	nLev=length(prof_depth);
56	prof_depth=reshape(prof_depth,length(prof_depth),1);
57	MITprof.prof_depth=prof_depth;
58
59	MITprof.prof_date=zeros(nProf,1);
60	MITprof.prof_YYYYMMDD=zeros(nProf,1);
61	MITprof.prof_HHMMSS=zeros(nProf,1);
62	MITprof.prof_lon=zeros(nProf,1);
63	MITprof.prof_lat=zeros(nProf,1);
64	MITprof.prof_basin=zeros(nProf,1);
65	MITprof.prof_point=zeros(nProf,1);
66
67	MITprof.prof_descr=cell(nProf,1);
68
69	for ii=1:length(list_vars),
70	MITprof=setfield(MITprof,list_vars{ii},zeros(nProf,nLev));
71	end
72
73	MITprof.np=nProf;
74	MITprof.nr=nLev;
75	MITprof.nd=0;
76	MITprof.list_descr={};
77
78
79