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gforget |
1.1 |
function [profOut]=MITprof_resample(profIn,fldIn,filOut,method,varargin); |
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%object: resample a set of fields in file filFldIn with specified time |
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% line timeIn to the positions of profIn and add to file filOut |
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%inputs: profIn is a gcmfaces field (nan-masked; up to N3,N4 dimensions) |
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% fldIn is a description of the fields being resampled including |
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% the corresponding file name and additional specs : |
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% fldIn.name, fldIn.long_name, fldIn.units, fldIn.fil (file |
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% name) and fldIn.tim (time axis specification). Supported |
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% fldIn.tim spec: 'const' (for time invariant climatology), |
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% 'monclim' (for monthly climatology), 'monser' (for monthly |
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% time series) |
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% filOut is the output MITprof file name (if un-specified |
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% the resul may only be returned as a function argument) |
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% method may be 'polygons' (or 'TriScatteredInterp' ... via |
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% gcmfaces_interp_2d in a loop ... to be implemented later) |
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%outputs: profOut is the MITprof structure where the interpolated values |
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% were appended to profIn (if un-specified the result |
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% may only be returned to output file) |
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% |
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%filFldIn is assumed to be 3D and binary at this point |
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gcmfaces_global; |
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doOut=~isempty(who('filOut')); doOutInit=false; |
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if doOut; doOut=~isempty(filOut); end; |
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if doOut; doOutInit=isempty(dir(filOut)); end; |
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if isempty(who('method')); method='polygons'; end; |
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%1) deal with time line |
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if strcmp(fldIn.tim,'monclim'); |
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tim_fld=[-0.5:12.5]; rec_fld=[12 1:12 1]; |
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tmp1=datevec(profIn.prof_date); |
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tmp2=datenum([tmp1(:,1) ones(profIn.np,2) zeros(profIn.np,3)]); |
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tim_prof=(profIn.prof_date-tmp2); |
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tim_prof(tim_prof>365)=365; |
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tim_prof=tim_prof/365*12;%neglecting differences in months length |
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gforget |
1.5 |
elseif strcmp(fldIn.tim,'monloop'); |
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tmp1=dir(fldIn.fil); |
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nt=tmp1.bytes/prod(mygrid.ioSize)/length(mygrid.RC)/4; |
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tmp1=[1:nt]'; tmp2=ones(nt,1)*[1992 1 15 0 0 0]; tmp2(:,2)=tmp1; |
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tim_fld=datenum(tmp2); |
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tim_fld=[tim_fld(1)-31 tim_fld' tim_fld(end)+31]; |
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rec_fld=[nt 1:nt 1]; |
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tmp1=datenum([1992 1 1 0 0 0]); |
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tmp2=datenum([1992+nt/12 1 1 0 0 0]);; |
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tim_prof=tmp1+mod(profIn.prof_date-tmp1,tmp2); |
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gforget |
1.3 |
elseif strcmp(fldIn.tim,'const')|strcmp(fldIn.tim,'std'); |
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tim_fld=[1 2]; rec_fld=[1 1]; |
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gforget |
1.1 |
tim_prof=1.5*ones(profIn.np,1); |
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else; |
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error('this case remains to be implemented'); |
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end; |
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lon=profIn.prof_lon; lat=profIn.prof_lat; |
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depIn=-mygrid.RC; depOut=profIn.prof_depth; |
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profOut=NaN*ones(profIn.np,profIn.nr); |
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%2) loop over record pairs |
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gforget |
1.5 |
if ~strcmp(method,'bindata'); gcmfaces_bindata; end; |
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gforget |
1.1 |
for tt=1:length(rec_fld)-1; |
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gforget |
1.5 |
tt |
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% |
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gforget |
1.2 |
fld0=mygrid.mskC.*read_bin(fldIn.fil,rec_fld(tt)); |
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fld1=mygrid.mskC.*read_bin(fldIn.fil,rec_fld(tt+1)); |
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gforget |
1.1 |
ndim=length(size(fld0{1})); |
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fld=cat(ndim+1,fld0,fld1); |
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% |
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ii=find(tim_prof>=tim_fld(tt)&tim_prof<tim_fld(tt+1)); |
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if ~isempty(ii); |
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gforget |
1.5 |
if ~strcmp(method,'bindata'); |
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gforget |
1.3 |
arr=gcmfaces_interp(fld,lon(ii),lat(ii),method); |
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gforget |
1.1 |
arr2=gcmfaces_interp_1d(2,depIn,arr,depOut); |
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gforget |
1.5 |
%now linear in time: |
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k0=floor(tim_prof(ii)); k1=k0+1; |
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a0=tim_prof(ii)-k0; a0=a0*ones(1,profIn.nr); |
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profOut(ii,:)=(1-a0).*arr2(:,:,1)+a0.*arr2(:,:,2); |
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else; |
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[prof_i,prof_j]=gcmfaces_bindata(lon(ii),lat(ii)); |
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FLD=convert2array(fld(:,:,:,1)); |
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nk=length(mygrid.RC); kk=ones(1,nk); |
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np=length(ii); pp=ones(np,1); |
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ind2prof=sub2ind(size(FLD),prof_i*kk,prof_j*kk,pp*[1:nk]); |
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arr=FLD(ind2prof); |
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arr2=gcmfaces_interp_1d(2,depIn,arr,depOut); |
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profOut(ii,:)=arr2; |
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end; |
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% |
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if strcmp(fldIn.tim,'std'); |
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gforget |
1.4 |
profOut(ii,:)=profOut(ii,:).*randn(size(profOut(ii,:))); |
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gforget |
1.5 |
end; |
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gforget |
1.4 |
end; |
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gforget |
1.1 |
end; |
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%3) deal with file output |
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if doOutInit; |
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%create a header only file to later append resampled fields |
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prof=profIn; |
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tmp1=fieldnames(prof); |
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nt=length(prof.prof_date); |
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nr=length(prof.prof_depth); |
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for ii=1:length(tmp1); |
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tmp2=prod(size(getfield(prof,tmp1{ii}))); |
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if tmp2==nt*nr; prof=rmfield(prof,tmp1{ii}); end; |
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end; |
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MITprof_write(filOut,prof); |
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end; |
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if doOut; |
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%add the array itelf |
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MITprof_addVar(filOut,fldIn.name,'double',{'iDEPTH','iPROF'},profOut); |
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%add its attributes |
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nc=ncopen(filOut,'write'); |
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ncaddAtt(nc,fldIn.name,'long_name',fldIn.long_name); |
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ncaddAtt(nc,fldIn.name,'units',fldIn.units); |
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ncaddAtt(nc,fldIn.name,'missing_value',fldIn.missing_value); |
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ncaddAtt(nc,fldIn.name,'_FillValue',fldIn.FillValue); |
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ncclose(nc); |
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end; |
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%4) deal with argument output |
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if nargout>0; profOut=setfield(profIn,fldIn.name,profOut); end; |
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