| 1 |
roquet |
1.11 |
function [MITprof]=MITprof_load(fileIn,varargin); |
| 2 |
gforget |
1.1 |
%function: MITprof_load |
| 3 |
|
|
%object: read netcdf data files in the "MIT format" |
| 4 |
|
|
%author: Gael Forget (gforget@mit.edu) |
| 5 |
|
|
%date: june 21th, 2006 |
| 6 |
|
|
% |
| 7 |
|
|
%usage: [MITprof]=MITprof_load(fileIn); |
| 8 |
roquet |
1.5 |
% ---> loads full data set |
| 9 |
|
|
% [MITprof]=MITprof_load(fileIn,list_vars); |
| 10 |
gforget |
1.1 |
% ---> loads only the files listed in list_vars cell |
| 11 |
|
|
% array (e.g. list_vars={'prof_T','prof_Tweight'}) |
| 12 |
|
|
% plus the one dimensional information (prof_lon etc.) |
| 13 |
|
|
% |
| 14 |
|
|
%note: this does the same as MITprof_read, but |
| 15 |
roquet |
1.5 |
% - replaces missing values with NaN |
| 16 |
|
|
% - adds a couple fields: np, nr, nd, list_descr |
| 17 |
|
|
% - replaces prof_descr with a cell form |
| 18 |
gforget |
1.1 |
% |
| 19 |
|
|
%inputs: fileIn data file name |
| 20 |
roquet |
1.10 |
% list_vars variables list (optional) |
| 21 |
gforget |
1.1 |
% |
| 22 |
|
|
%outputs: MITprof structure containing the various fields/vectors |
| 23 |
|
|
|
| 24 |
|
|
|
| 25 |
gforget |
1.2 |
|
| 26 |
roquet |
1.10 |
% check that file exists and add prefix and suffix if necessary |
| 27 |
roquet |
1.7 |
[pathstr, name, ext] = fileparts(fileIn); |
| 28 |
|
|
if isempty(pathstr) | strcmp(pathstr,'.'), pathstr=pwd; end |
| 29 |
|
|
if isempty(ext) | ~strcmp(ext,'.nc'), ext='.nc'; end |
| 30 |
|
|
fileIn=[pathstr '/' name ext]; |
| 31 |
roquet |
1.8 |
if ~exist(fileIn,'file'), error([fileIn ' : file not found']); end |
| 32 |
gforget |
1.1 |
|
| 33 |
roquet |
1.10 |
% load data using the low-level function MITprof_read |
| 34 |
|
|
[MITprof]=MITprof_read(fileIn,varargin{:}); |
| 35 |
|
|
|
| 36 |
roquet |
1.5 |
% replace missing_values with NaNs |
| 37 |
|
|
fldNames=fieldnames(MITprof); |
| 38 |
roquet |
1.11 |
fldNames=setdiff(fldNames,{'prof_depth','depth'}); % no NaNs in prof_depth |
| 39 |
gforget |
1.14 |
fldNames=setdiff(fldNames,{'prof_date','prof_YYYYMMDD','prof_HHMMSS'}); |
| 40 |
|
|
if size(fldNames,2)==1; fldNames=fldNames'; end; |
| 41 |
|
|
|
| 42 |
roquet |
1.5 |
for ii=1:length(fldNames); |
| 43 |
|
|
fld=getfield(MITprof,fldNames{ii}); |
| 44 |
|
|
if ~isempty(fld) |
| 45 |
roquet |
1.6 |
f = ncopen(fileIn, 'nowrite'); |
| 46 |
|
|
varname=fldNames{ii}; |
| 47 |
|
|
spval=ncgetFillVal(f,varname); |
| 48 |
|
|
if ~isempty(spval); |
| 49 |
|
|
fld(fld==spval)=NaN; |
| 50 |
|
|
MITprof=setfield(MITprof,fldNames{ii},fld); |
| 51 |
|
|
end; |
| 52 |
|
|
ncclose(f); |
| 53 |
roquet |
1.5 |
end |
| 54 |
gforget |
1.1 |
end; |
| 55 |
|
|
|
| 56 |
roquet |
1.11 |
% missing values for prof_date |
| 57 |
|
|
if isfield(MITprof,'prof_date'), |
| 58 |
|
|
MITprof.prof_date( isnan(MITprof.prof_YYYYMMDD) )=NaN; |
| 59 |
|
|
end |
| 60 |
|
|
|
| 61 |
gforget |
1.12 |
%quick fix when date/lon/lat is NaN: |
| 62 |
|
|
%----------------------------------- |
| 63 |
|
|
ii=find(isnan(MITprof.prof_lon.*MITprof.prof_YYYYMMDD.*MITprof.prof_HHMMSS.*MITprof.prof_lat)); |
| 64 |
|
|
MITprof.prof_lon(ii)=0; MITprof.prof_lat(ii)=-90; MITprof.prof_YYYYMMDD(ii)=19000101; MITprof.prof_HHMMSS(ii)=000000; |
| 65 |
|
|
|
| 66 |
roquet |
1.9 |
%convert prof_descr into a cell array: |
| 67 |
gforget |
1.1 |
%---------------------------------- |
| 68 |
roquet |
1.10 |
if isfield(MITprof,'prof_descr') |
| 69 |
|
|
MITprof.prof_descr=cellstr(MITprof.prof_descr); |
| 70 |
|
|
MITprof.list_descr=unique(MITprof.prof_descr); |
| 71 |
|
|
MITprof.nd=length(MITprof.list_descr); |
| 72 |
|
|
end |
| 73 |
gforget |
1.1 |
|
| 74 |
|
|
%add a couple things: |
| 75 |
|
|
%-------------------- |
| 76 |
|
|
MITprof.np=length(MITprof.prof_lon); |
| 77 |
|
|
MITprof.nr=length(MITprof.prof_depth); |
| 78 |
|
|
|
Parent Directory
| 
Revision Log
| 
Revision Graph