| 1 |
gforget |
1.1 |
function [varargout]=profile_read_seals(dataset,nf,m); |
| 2 |
|
|
|
| 3 |
|
|
fileIn=[dataset.dirIn dataset.fileInList(nf).name]; |
| 4 |
|
|
|
| 5 |
|
|
%output: |
| 6 |
|
|
% ymd hms imonth lat lon direc p t s p_ERR t_ERR s_ERR |
| 7 |
|
|
|
| 8 |
|
|
%common block: |
| 9 |
|
|
global PLATFORM_NUMBER_fillval PLATFORM_NUMBER; |
| 10 |
|
|
global VECdateOBS LATITUDE LONGITUDE DIRECTION; |
| 11 |
|
|
global PRES PRES_ADJUSTED PRES_ADJUSTED_QC PRES_fillval PRES_QC; |
| 12 |
|
|
global TEMP TEMP_ADJUSTED TEMP_ADJUSTED_QC TEMP_fillval TEMP_QC TEMP_ADJUSTED_ERROR; |
| 13 |
|
|
global PSAL PSAL_ADJUSTED PSAL_ADJUSTED_QC PSAL_fillval PSAL_QC PSAL_ADJUSTED_ERROR; |
| 14 |
|
|
|
| 15 |
|
|
|
| 16 |
|
|
if m==0; |
| 17 |
|
|
%read the file and put the data in common blocks: |
| 18 |
|
|
|
| 19 |
|
|
clear PRES* PSAL* TEMP*; |
| 20 |
|
|
global PRES PRES_ADJUSTED PRES_ADJUSTED_QC PRES_fillval PRES_QC; |
| 21 |
|
|
global TEMP TEMP_ADJUSTED TEMP_ADJUSTED_QC TEMP_fillval TEMP_QC TEMP_ADJUSTED_ERROR; |
| 22 |
|
|
global PSAL PSAL_ADJUSTED PSAL_ADJUSTED_QC PSAL_fillval PSAL_QC PSAL_ADJUSTED_ERROR; |
| 23 |
|
|
TEMP=8888*ones(500,1);PSAL=8888*ones(500,1); |
| 24 |
|
|
|
| 25 |
|
|
%WHAT IS WRONG HERE??? |
| 26 |
|
|
%if ( rep_nb~=1|isempty(findstr(fileIn,'20050911_prof')) ) |
| 27 |
|
|
|
| 28 |
|
|
|
| 29 |
|
|
eval(['ncload ' fileIn ';']); |
| 30 |
|
|
|
| 31 |
|
|
%some dimensions inversions exist for _QC variables (!?) |
| 32 |
|
|
if size(PRES_QC,1)~=size(PRES,1) |
| 33 |
|
|
PRES_QC=PRES_QC'; |
| 34 |
|
|
if ~isempty(who('PRES_ADJUSTED_QC'));PRES_ADJUSTED_QC=PRES_ADJUSTED_QC';end; |
| 35 |
|
|
if ~isempty(who('PSAL_QC'));PSAL_QC=PSAL_QC';end; |
| 36 |
|
|
if ~isempty(who('PSAL_ADJUSTED_QC'));PSAL_ADJUSTED_QC=PSAL_ADJUSTED_QC';end; |
| 37 |
|
|
if ~isempty(who('TEMP_QC'));TEMP_QC=TEMP_QC';end; |
| 38 |
|
|
if ~isempty(who('TEMP_ADJUSTED_QC'));TEMP_ADJUSTED_QC=TEMP_ADJUSTED_QC';end; |
| 39 |
|
|
end |
| 40 |
|
|
|
| 41 |
|
|
if size(PLATFORM_NUMBER,1)~=size(PRES,1); PLATFORM_NUMBER=PLATFORM_NUMBER'; end; %' |
| 42 |
|
|
|
| 43 |
|
|
%get the fillvalues: |
| 44 |
|
|
nc = netcdf(fileIn, 'nowrite'); |
| 45 |
|
|
PRES_fillval=fillval(nc{'PRES'}); |
| 46 |
|
|
PSAL_fillval=fillval(nc{'PSAL'}); |
| 47 |
|
|
TEMP_fillval=fillval(nc{'TEMP'}); |
| 48 |
|
|
PLATFORM_NUMBER_fillval=fillval(nc{'PLATFORM_NUMBER'}); |
| 49 |
|
|
nc = close(nc); |
| 50 |
|
|
|
| 51 |
|
|
REFdateOBS=str2num(strvcat(REFERENCE_DATE_TIME(1:4),REFERENCE_DATE_TIME(5:6),REFERENCE_DATE_TIME(7:8),REFERENCE_DATE_TIME(9:10),REFERENCE_DATE_TIME(11:12),REFERENCE_DATE_TIME(13:14)))';%' |
| 52 |
|
|
REFdateOBS=jul_0h(REFdateOBS); |
| 53 |
|
|
VECdateOBS=REFdateOBS+JULD; |
| 54 |
|
|
|
| 55 |
|
|
xx=size(PRES);mloc=xx(1);mpts=xx(2); |
| 56 |
|
|
|
| 57 |
|
|
varargout(1) = {length(LONGITUDE)}; |
| 58 |
|
|
|
| 59 |
|
|
else;%if m~=0; |
| 60 |
|
|
%select one profile for output: |
| 61 |
|
|
|
| 62 |
|
|
%date, position, etc |
| 63 |
|
|
|
| 64 |
|
|
tmp1=greg_0h(VECdateOBS(m)); |
| 65 |
|
|
ymd=tmp1(1)*1e4+tmp1(2)*1e2+tmp1(3); |
| 66 |
|
|
hms=tmp1(4)*1e4+tmp1(5)*1e2+tmp1(6); |
| 67 |
|
|
|
| 68 |
|
|
lat=LATITUDE(m); |
| 69 |
|
|
lon=LONGITUDE(m); |
| 70 |
|
|
if lon < 0; lon=lon+360; end; |
| 71 |
|
|
|
| 72 |
|
|
%%%%%%%ilon=find(((vec_lon-lon).^2)==min((vec_lon-lon).^2)); ilon=ilon(1); |
| 73 |
|
|
%%%%%%%ilat=find(((vec_lat-lat).^2)==min((vec_lat-lat).^2)); ilat=ilat(1); |
| 74 |
|
|
|
| 75 |
|
|
direc=0;if(DIRECTION(m)=='A');direc=1;end;if(DIRECTION(m)=='D');direc=2;end |
| 76 |
|
|
|
| 77 |
|
|
pnum_txt=deblank(PLATFORM_NUMBER(m,:)); |
| 78 |
|
|
pnum_txt=pnum_txt(pnum_txt~=PLATFORM_NUMBER_fillval); |
| 79 |
|
|
pnum=double(pnum_txt); pnum=pnum(find(pnum>=48&pnum<=57)); pnum=str2num(char(pnum)); |
| 80 |
|
|
if isempty(pnum); pnum_txt='9999'; pnum=9999; end; |
| 81 |
|
|
|
| 82 |
|
|
%observations |
| 83 |
|
|
|
| 84 |
|
|
% if ~isempty(PRES_ADJUSTED), %taking adjusted fields |
| 85 |
|
|
% p=PRES_ADJUSTED(m,:); |
| 86 |
|
|
% p_QC=PRES_ADJUSTED_QC(m,:); |
| 87 |
|
|
% t=TEMP_ADJUSTED(m,:); |
| 88 |
|
|
% t_QC=TEMP_ADJUSTED_QC(m,:); |
| 89 |
|
|
% s=PSAL_ADJUSTED(m,:); |
| 90 |
|
|
% s_QC=PSAL_ADJUSTED_QC(m,:); |
| 91 |
|
|
% t_ERR=TEMP_ADJUSTED_ERROR(m,:); |
| 92 |
|
|
% t_ERR(t_ERR==TEMP_fillval|isnan(t_ERR))=0; |
| 93 |
|
|
% s_ERR=PSAL_ADJUSTED_ERROR(m,:); |
| 94 |
|
|
% s_ERR(s_ERR==PSAL_fillval|isnan(s_ERR))=0; |
| 95 |
|
|
% |
| 96 |
|
|
% else |
| 97 |
|
|
p=PRES(m,:); |
| 98 |
|
|
p_QC=PRES_QC(m,:); |
| 99 |
|
|
t=TEMP(m,:); |
| 100 |
|
|
t_QC=TEMP_QC(m,:); |
| 101 |
|
|
s=PSAL(m,:); |
| 102 |
|
|
s_QC=PSAL_QC(m,:); |
| 103 |
|
|
t_ERR=p*0; s_ERR=p*0; |
| 104 |
|
|
|
| 105 |
|
|
% end |
| 106 |
|
|
|
| 107 |
|
|
|
| 108 |
|
|
p(isnan(p))=PRES_fillval; |
| 109 |
|
|
p_QC(isnan(p))='5'; |
| 110 |
|
|
for n=1:length(p)-1; |
| 111 |
|
|
tmp1=find(p(n+1:end)==p(n)&p(n+1:end)~=PRES_fillval); |
| 112 |
|
|
p(n+tmp1)=PRES_fillval;p_QC(n+tmp1)='5'; |
| 113 |
|
|
end |
| 114 |
|
|
|
| 115 |
|
|
bad_P=0; |
| 116 |
|
|
tmp1=find(p_QC=='4'); |
| 117 |
|
|
if(length(tmp1)<=5); |
| 118 |
|
|
%get rid of these few bad points and keep the profile |
| 119 |
|
|
p(tmp1)=PRES_fillval;p_QC(tmp1)='5'; |
| 120 |
|
|
else; |
| 121 |
|
|
%flag the profile (will be masked in the main file) |
| 122 |
|
|
%but keep the bad points (to interp and be able to CHECK) |
| 123 |
|
|
bad_P=1; |
| 124 |
|
|
end; |
| 125 |
|
|
|
| 126 |
|
|
p(p==PRES_fillval)=NaN; |
| 127 |
|
|
p(p==PRES_fillval)=NaN; |
| 128 |
|
|
if isempty(whos('t')); %this file does not contain salinity data... |
| 129 |
|
|
t=NaN*p; t_ERR=0*p; |
| 130 |
|
|
else; |
| 131 |
|
|
t(t_QC~='1'&t_QC~='2')=NaN; |
| 132 |
|
|
end; |
| 133 |
|
|
|
| 134 |
|
|
if isempty(whos('s')); %this file does not contain salinity data... |
| 135 |
|
|
s=NaN*t; s_ERR=0*t_ERR; |
| 136 |
|
|
else; |
| 137 |
|
|
s(s_QC~='1'&s_QC~='2')=NaN; |
| 138 |
|
|
end; |
| 139 |
|
|
|
| 140 |
|
|
|
| 141 |
|
|
profileCur.pnum_txt=pnum_txt; |
| 142 |
|
|
profileCur.ymd=ymd; profileCur.hms=hms; |
| 143 |
|
|
profileCur.lat=lat; profileCur.lon=lon; |
| 144 |
|
|
profileCur.direc=direc; |
| 145 |
|
|
profileCur.t=t; |
| 146 |
|
|
profileCur.s=s; |
| 147 |
|
|
profileCur.p=p; |
| 148 |
|
|
profileCur.t_ERR=t_ERR; |
| 149 |
|
|
profileCur.s_ERR=s_ERR; |
| 150 |
|
|
profileCur.PorZisBAD=bad_P; |
| 151 |
|
|
|
| 152 |
|
|
%bad_latlon=0; |
| 153 |
|
|
%if profileCur.lat<-90|profileCur.lat>90; bad_latlon=1; end; |
| 154 |
|
|
%if profileCur.lon<-180|profileCur.lon>360; bad_latlon=1; end; |
| 155 |
|
|
%profileCur.LONorLATisBAD=bad_latlon; |
| 156 |
|
|
|
| 157 |
|
|
varargout = {profileCur}; |
| 158 |
|
|
|
| 159 |
|
|
end; |
| 160 |
|
|
|
| 161 |
|
|
|
| 162 |
|
|
|
Parent Directory
| 
Revision Log
| 
Revision Graph