/[MITgcm]/MITgcm_contrib/gael/profilesMatlabProcessing/ecco_v4/insitu_misfit.m
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revision 1.5 by gforget, Wed Apr 18 20:24:45 2012 UTC revision 1.6 by gforget, Sun Dec 30 00:35:53 2012 UTC
# Line 1  Line 1 
1  function []=insitu_misfit(dirData,doComp,varargin);  function []=insitu_misfit(doComp,varargin);
 %[]=insitu_misfit(dirData,listData,listVar,varargin);  
2  %object:        computes or displays cost function statistics  %object:        computes or displays cost function statistics
3  %input:         dirData is the data main directory name  %input:         doComp states whether to compute & save (1) or load & display (0)
 %               doComp states whether to compute & save (1) or load & display (0)  
4  %optional must take the following form {'name',param1,param2,...} Active ones are  %optional must take the following form {'name',param1,param2,...} Active ones are
5  %               {'subdirData',subdirData} is the data subdirectory name ('profiles/output/' by default)  %               {'dirData',dirData} is the data directory name ('mat/profiles/output/' by default)
6  %               {'listData',data1,data2,...} where data1 e.g. is 'argo_indian.nc'  %               {'listData',data1,data2,...} where data1 e.g. is 'argo_indian.nc'
7  %               {'listVar',var1,var2} where var1 and var2 are 'T' and 'S'  %               {'listVar',var1,var2} where var1 and var2 are 'T' and 'S'
8  %               {'years',year0,year1} to limit computation to [year0 year1] interval  %               {'years',year0,year1} to limit computation to [year0 year1] interval
9  %               {'subdirMat',subdirMat} where subdirMat is the output subdirectory ('mat/' by default)  %               {'dirMat',dirMat} where dirMat is the output directory ('mat/' by default)
10  %               {'suffMat',suffMat} is the mat file suffix ('all' by default)  %               {'suffMat',suffMat} is the mat file suffix ('all' by default)
11  %               {'subdirTex',subdirTex} where subdirTex is the tex directory ('tex/' by default)  %               {'dirTex',dirTex} where dirTex is the tex directory ('tex/' by default)
12    %               {'nameTex',nameTex} is the tex file name ('myPlots' by default)
13  %               {'addToTex',addToTex} states whether (1) or not (0 default) to  %               {'addToTex',addToTex} states whether (1) or not (0 default) to
14  %                       augment an ongoing tex file (see write2tex.m, subdirTex)  %                       augment an ongoing tex file (see write2tex.m, dirTex)
15  %  %
16  %example:        insitu_misfit('./',1,{'listData','argo_in*'});  %example:        insitu_misfit('./',1,{'listData','argo_in*'});
17    
# Line 26  global mygrid; if isempty(mygrid); grid_ Line 25  global mygrid; if isempty(mygrid); grid_
25    
26  %set more optional paramaters to default values  %set more optional paramaters to default values
27  global myparms; year0=myparms.yearInAve(1); year1=myparms.yearInAve(2);  global myparms; year0=myparms.yearInAve(1); year1=myparms.yearInAve(2);
28  %year0=1992; year1=2008;  listData={'argo_june2012_1992_to_2007*','argo_june2012_2008_to_2010*',...
29  listData={'WOD09_XBT*','WOD09_CTD*','argo_in*','argo_at*','argo_pa*','seals*'};            'argo_june2012_2011_to_2012*','climode_june2012*',...
30              'ctd_june2012*','itp_june2012*','seals_june2012*','xbt_june2012*'};
31  listVar={'T','S'};  listVar={'T','S'};
32  %shorter test case: listData={'argo_in*'}; listVar={'T'};  %shorter test case: listData={'argo_in*'}; listVar={'T'};
33  subdirData='/profiles/output/';  dirData='mat/profiles/output/';
34  subdirMat='mat/'; suffMat='_all';  dirMat='mat/'; suffMat='_all';
35  subdirTex='tex/'; addToTex=0;  dirTex='tex/'; addToTex=0; nameTex='myPlots';
36  %set more optional paramaters to user defined values  %set more optional paramaters to user defined values
37  for ii=1:nargin-2;  for ii=1:nargin-1;
38     if strcmp(varargin{ii}{1},'listData'); listData={varargin{ii}{2:end}};     if strcmp(varargin{ii}{1},'listData'); listData={varargin{ii}{2:end}};
39     elseif strcmp(varargin{ii}{1},'listVar'); listVar={varargin{ii}{2:end}};     elseif strcmp(varargin{ii}{1},'listVar'); listVar={varargin{ii}{2:end}};
40     elseif strcmp(varargin{ii}{1},'years'); year0=varargin{ii}{2}; year1=varargin{ii}{3};     elseif strcmp(varargin{ii}{1},'years'); year0=varargin{ii}{2}; year1=varargin{ii}{3};
41     elseif strcmp(varargin{ii}{1},'subdirMat'); subdirMat=varargin{ii}{2};     elseif strcmp(varargin{ii}{1},'dirMat'); dirMat=varargin{ii}{2};
42     elseif strcmp(varargin{ii}{1},'suffMat'); suffMat=['_' varargin{ii}{2}];     elseif strcmp(varargin{ii}{1},'suffMat'); suffMat=['_' varargin{ii}{2}];
43     elseif strcmp(varargin{ii}{1},'subdirTex'); subdirTex=varargin{ii}{2};     elseif strcmp(varargin{ii}{1},'dirTex'); dirTex=varargin{ii}{2};
44     elseif strcmp(varargin{ii}{1},'addToTex'); addToTex=varargin{ii}{2};     elseif strcmp(varargin{ii}{1},'addToTex'); addToTex=varargin{ii}{2};
45     elseif strcmp(varargin{ii}{1},'subdirData'); subdirData=varargin{ii}{2};     elseif strcmp(varargin{ii}{1},'nameTex'); nameTex=varargin{ii}{2};
46       elseif strcmp(varargin{ii}{1},'dirData'); dirData=varargin{ii}{2};
47     else;     else;
48         warning('inputCheck:insitu_misfit',...         warning('inputCheck:insitu_misfit',...
49             ['unknown option ''' varargin{ii}{1} ''' was ignored']);             ['unknown option ''' varargin{ii}{1} ''' was ignored']);
# Line 61  nk=size(vecDepth,1); Line 62  nk=size(vecDepth,1);
62  for vv=1:length(listVar);  for vv=1:length(listVar);
63      varCur=listVar{vv};      varCur=listVar{vv};
64      %get the misfits (here not normalized):      %get the misfits (here not normalized):
65      [MITprof]=MITprof_stats_load([dirData '/' subdirData],listData,varCur,1);      [MITprof]=MITprof_stats_load(dirData,listData,varCur,1);
66      %mask out values that are not in year range:      %mask out values that are not in year range:
67      ii=find(MITprof.prof_date<date0|MITprof.prof_date>date1);      ii=find(MITprof.prof_date<date0|MITprof.prof_date>date1);
68      MITprof.prof(ii,:)=NaN;      MITprof.prof(ii,:)=NaN;
# Line 75  for vv=1:length(listVar); Line 76  for vv=1:length(listVar);
76      end;      end;
77  end;  end;
78    
79  eval(['save ' dirData '/' subdirMat 'insitu_misfit' suffMat '.mat misfit_map_* vecDepth  year* listData listVar;']);  eval(['save ' dirMat 'insitu_misfit' suffMat '.mat misfit_map_* vecDepth  year* listData listVar;']);
80    
81  else;  else;
82    
83  eval(['load ' dirData '/' subdirMat 'insitu_misfit' suffMat '.mat;']);  eval(['load ' dirMat 'insitu_misfit' suffMat '.mat;']);
84    
85  nk=size(vecDepth,1);  nk=size(vecDepth,1);
86  figureL;  figureL;
# Line 98  end; Line 99  end;
99    
100  myCaption={'Time mean misfit (model-data) for in situ profiles, ',...  myCaption={'Time mean misfit (model-data) for in situ profiles, ',...
101           'at various depths (rows), for T (left; in K) and S (right; in psu).'};           'at various depths (rows), for T (left; in K) and S (right; in psu).'};
102  if addToTex; write2tex([dirData '/' subdirTex '/myPlots.tex'],2,myCaption,gcf); end;  if addToTex; write2tex([dirTex '/' nameTex '.tex'],2,myCaption,gcf); end;
103    
104  end;  end;
105    
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