matlab_class/gcmfaces_diags/diags_set_B.m


doOmit3Dfields=0;
if mygrid.memoryLimit~=0; doOmit3Dfields=1; end;

if userStep==1;%diags to be computed
    %here _s stands for cumulative sum and _2s for cumulative sum of squares
    %the _s should be stated first
    listDiags=['SIatmQnt_s SIatmQnt_2s SIatmFW_s SIatmFW_2s oceQnet_s oceQnet_2s ' ...
               'oceFWflx_s oceFWflx_2s fldTZ_s fldTZ_2s fldTM_s fldTM_2s ' ...
               'curlTau_s curlTau_2s fldETAN_s fldETAN_2s ' ...
               'fldSSH_s fldSSH_2s fldMLD_s fldMLD_2s'];
    if ~doOmit3Dfields;
      listDiags=[listDiags ' THETA_s THETA_2s SALT_s SALT_2s WVELMASS_s WVELMASS_2s'];
    end;

elseif userStep==2;%input files and variables
    listFlds={  'SIatmQnt','SIatmFW ','oceQnet ','oceFWflx','oceTAUX','oceTAUY','ETAN','sIceLoad','MXLDEPTH'};
    if ~doOmit3Dfields;
      listFlds={listFlds{:} ,'THETA','SALT','WVELMASS'};
    end;
    listFldsNames=deblank(listFlds);
    listFiles={'state_3d_set1','trsp_3d_set1','state_2d_set1','other_2d_set1'};
    listSubdirs={[dirModel 'diags/OTHER/' ],[dirModel 'diags/STATE/' ],[dirModel 'diags/TRSP/' ]};

elseif userStep==3;%computation
    %mask fields:
    SIatmQnt=SIatmQnt.*mygrid.mskC(:,:,1);
    SIatmFW=SIatmFW.*mygrid.mskC(:,:,1);
    oceQnet=oceQnet.*mygrid.mskC(:,:,1);
    oceFWflx=oceFWflx.*mygrid.mskC(:,:,1);
    fldTX=oceTAUX.*mygrid.mskW(:,:,1);
    fldTY=oceTAUY.*mygrid.mskS(:,:,1);
    %compute Eastward/Northward wind stresses:
    [fldTZ,fldTM]=calc_UEVNfromUXVY(fldTX,fldTY);
    %compute wind stress curl:
    %curlTau=calc_UV_curl(fldTX, fldTY,1 );%the doMask argument should not matter as msk was already applied
    curlTau=NaN*fldTZ;
    %mask and re-arrange fields:
    fldETAN=ETAN.*mygrid.mskC(:,:,1);
    fldSSH=(ETAN+sIceLoad/myparms.rhoconst).*mygrid.mskC(:,:,1);
    fldMLD=MXLDEPTH.*mygrid.mskC(:,:,1);
    %
    if ~doOmit3Dfields;
      THETA=THETA.*mygrid.mskC;
      SALT=SALT.*mygrid.mskC;
      WVELMASS=WVELMASS.*mygrid.mskC;
    end;
    %
    if ii>1;
      fileMatPrev=['diags_set_' tmp1 '_' num2str(listTimes(ii-1)) '.mat'];
      listTimesBak=listTimes;
      load([dirMat fileMatPrev]);
      listTimes=listTimesBak;
    end;
    for jj=1:length(listDiags)/2;
        myDiag=listDiags{1+2*(jj-1)}(1:end-2);
        if ii==1;
            eval([myDiag '_s=0*' myDiag ';']);
            eval([myDiag '_2s=0*' myDiag '.^2;']);
        end;
        eval([myDiag '_s=' myDiag '_s+' myDiag ';']);
        eval([myDiag '_2s=' myDiag '_2s+' myDiag '.^2;']);
    end;

%===================== COMPUTATIONAL SEQUENCE ENDS =========================%
%===================== PLOTTING SEQUENCE BEGINS    =========================%

elseif userStep==0;%loading / post-processing of mat files

  %load last cumsum
  alldiag=diags_read_from_mat(dirMat,[fileMat '_*.mat'],'',myparms.recInAve(2));
  %load first cumsum
  if myparms.recInAve(1)>1;
    tmpdiag=diags_read_from_mat(dirMat,[fileMat '_*.mat'],'',myparms.recInAve(1)-1);
    for ii=1:length(alldiag.listDiags);
         tmp0=alldiag.listDiags{ii};
         if ~strcmp(tmp0,'listTimes')&~strcmp(tmp0,'listSteps');
           tmp1=getfield(alldiag,alldiag.listDiags{ii});
           tmp2=getfield(tmpdiag,alldiag.listDiags{ii});
           alldiag=setfield(alldiag,tmp0,tmp1-tmp2);
         end;
    end;
  end;
  %ensure backward compatibility
  if ~isfield(alldiag,'WVELMASS_s'); alldiag.WVELMASS_s=NaN*alldiag.THETA_s; end;
  if ~isfield(alldiag,'WVELMASS_2s'); alldiag.WVELMASS_2s=NaN*alldiag.THETA_2s; end;
  if ~isfield(alldiag,'fldSSH_s'); alldiag.fldSSH_s=alldiag.fldETANLEADS_s; end;
  if ~isfield(alldiag,'fldSSH_2s'); alldiag.fldSSH_2s=alldiag.fldETANLEADS_2s; end;
  jj=find(strcmp(alldiag.listDiags,'fldETANLEADS_s'));
  if ~isempty(jj); alldiag.listDiags{jj}='fldSSH_s'; end;
  jj=find(strcmp(alldiag.listDiags,'fldETANLEADS_2s'));
  if ~isempty(jj); alldiag.listDiags{jj}='fldSSH_2s'; end;
  %
  n=diff(myparms.recInAve)+1;
  for jj=1:length(alldiag.listDiags)/2;
     tmp0=alldiag.listDiags{1+2*(jj-1)};
     if ~strcmp(tmp0,'listTimes')&~strcmp(tmp0,'listSteps');
       tmp1=1/n*getfield(alldiag,tmp0);
       tmp2=1/n*getfield(alldiag,[tmp0(1:end-1) '2s']);
       tmp2=(tmp2-tmp1.^2);
       tmp2=n/(n-1)*tmp2;
       %tmp2(tmp2<0)=0;
       tmp2=sqrt(tmp2);
       alldiag=setfield(alldiag,[tmp0(1:end-2) '_mean'],tmp1);
       alldiag=setfield(alldiag,[tmp0(1:end-2) '_std'],tmp2);
     end;
  end;

  diagsWereLoaded=1

elseif userStep==-1;%plotting

    if isempty(setDiagsParams); 
      choicePlot={'all'};
    else;
      choicePlot=setDiagsParams;
    end;


%===== start with state variables

  if sum(strcmp(choicePlot,'all'))|sum(strcmp(choicePlot,'surface'));

    if addToTex; write2tex(fileTex,1,'sea surface height',2); end;

    %ETAN:
    fld=alldiag.fldETAN_mean;
    cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/100; title0='sea surface height (EXCLUDING ice)';
    if doAnomalies; cc=scaleAnom*[-1:0.1:1]*0.05; end;
    figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    myCaption={myYmeanTxt,'mean -- sea surface height (EXCLUDING ice, in m)'};
    if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

    %ETANLEADS:
    fld=alldiag.fldSSH_mean;
    cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/100; title0='sea surface height (INCLUDING ice)';
    if doAnomalies; cc=scaleAnom*[-1:0.1:1]*0.05; end;
    figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    myCaption={myYmeanTxt,'mean -- sea surface height (INCLUDING ice, in m)'};
    if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

    if multiTimes;
        %ETAN:
        fld=alldiag.fldETAN_std;
        cc=[0:25:500]/2500; title0='std(ETAN)';
        if doAnomalies; cc=scaleAnom*[0:0.1:1]*0.02; end;
        figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        myCaption={myYmeanTxt,' standard deviation -- sea surface height (EXCLUDING ice, in m)'};
        if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

        %ETANLEADS:
        fld=alldiag.fldSSH_std;
        cc=[0:25:500]/2500; title0='std(ETANLEADS)';
        if doAnomalies; cc=scaleAnom*[0:0.1:1]*0.02; end;
        figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        myCaption={myYmeanTxt,' standard deviation -- sea surface height (INCLUDING ice, in m)'};
        if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
    end;

    end;

  if ( sum(strcmp(choicePlot,'all'))|sum(strcmp(choicePlot,'subsrfc')) )&(~doOmit3Dfields);

    if addToTex; write2tex(fileTex,1,'3D state variables',2); end;

    cc_mean=1/100*[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]];
    cc_std=1/250*[0:25:500];
    kkList=[1 11 20 28 37 44];
    vvList={'THETA','SALT','WVELMASS'};

    for vv=1:length(vvList);
      vvtxt=vvList{vv};
      eval(['fld_mean=alldiag.' vvtxt '_mean;']);
      eval(['fld_std=alldiag.' vvtxt '_std;']);
      if strcmp(vvtxt,'WVELMASS');%convert into mm/day
           fld_mean=fld_mean*86400*365/1e3;
           fld_std=fld_std*86400*365/1e3;
      end;
      for kk=kkList;
        if strcmp(vvtxt,'WVELMASS')&kk==1; kk=2; end;
        if mygrid.RC(kk)>=-50; facD=0.5;
        elseif mygrid.RC(kk)>=-150; facD=1;
        elseif mygrid.RC(kk)>=-500; facD=2.5;
        elseif mygrid.RC(kk)>=-2000; facD=10;
        else; facD=20;
        end;
        %
        if strcmp(vvtxt,'THETA'); nm='temperature (in degC)'; facV=1;
        elseif strcmp(vvtxt,'SALT'); nm='salinity (in psu)'; facV=10;
        elseif strcmp(vvtxt,'WVELMASS'); nm='vertical velocity (in mm/year)'; facV=10;
        else; error('not yet implemented');
        end;
        %

    title0=sprintf('%s at %4dm',nm,round(-mygrid.RC(kk)));

    %time mean map:
    fld=fld_mean(:,:,kk).*mygrid.mskC(:,:,kk);
    if doAnomalies;
      cc=scaleAnom/facV/facD*cc_mean; 
    elseif strcmp(vvtxt,'WVELMASS');
      cc=1/facV*cc_mean; 
    else;
      cc=prctile(facV*fld,[2.5 97.5]);
      cc=[floor(cc(1)):ceil(cc(end))]/facV;
      %ensure at least 10 color levels
      fac0=1;
      while length(cc)<15;
        fac0=fac0*2;
        cc=prctile(fac0*facV*fld,[2.5 97.5]);
        cc=[floor(cc(1)):ceil(cc(end))]/facV/fac0;
      end;
      %ensure at most 10 color levels
      fac0=1;
      while length(cc)>30;
        fac0=fac0/2;
        cc=prctile(fac0*facV*fld,[2.5 97.5]);
        cc=[floor(cc(1)):ceil(cc(end))]/facV/fac0;
      end;
    end;
    %
    figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    myCaption={myYmeanTxt,'mean -- ',title0};
    if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

    if multiTimes;
        fld=fld_std(:,:,kk).*mygrid.mskC(:,:,kk);
        cc=1/facV/facD*cc_std; 
        if strcmp(vvtxt,'WVELMASS'); cc=1/facV*cc_std; end;
        if doAnomalies; cc=scaleAnom*cc; end;
        figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        myCaption={myYmeanTxt,' standard deviation -- ',title0};
        if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
    end;

    end;%for kk=...
    end;%for vv=...
    end;%if ( sum(strcmp(...


%now do surface fluxes and forcing fields

    if sum(strcmp(choicePlot,'all'))|sum(strcmp(choicePlot,'qnet'));

    if addToTex; write2tex(fileTex,1,'air-sea heat flux',2); end;

    %qnet from ocean+ice:
    fld=-alldiag.SIatmQnt_mean;
    cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]; title0='QNET to ocean+ice';
    if doAnomalies; cc=scaleAnom*[-1:0.1:1]*10; end;
    figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    myCaption={myYmeanTxt,'mean -- QNET to ocean+ice (W/m$^2$)'};
    if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

    %qnet to ocean:
    fld=alldiag.oceQnet_mean;
    cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]; title0='QNET to ocean';
    if doAnomalies; cc=scaleAnom*[-1:0.1:1]*10; end;
    figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    myCaption={myYmeanTxt,'mean -- QNET to ocean (W/m$^2$)'};
    if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
   
    if multiTimes;
        %qnet from ocean+ice:
        fld=alldiag.SIatmQnt_std;
        cc=[[0:5:25] 35 [50:25:200] [250 300]]; title0='std(QNET to ocean+ice)';
        if doAnomalies; cc=scaleAnom*[0:0.1:1]*5; end;
        figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        myCaption={myYmeanTxt,'  standard deviation -- QNET to ocean+ice (W/m$^2$)'};
        if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

        %qnet from ocean:
        fld=alldiag.oceQnet_std;
        cc=[[0:5:25] 35 [50:25:200] [250 300]]; title0='std(QNET to ocean)';
        if doAnomalies; cc=scaleAnom*[0:0.1:1]*5; end;
        figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        myCaption={myYmeanTxt,'  standard deviation -- QNET to ocean (W/m$^2$)'};
        if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
    end;

    end;


    if sum(strcmp(choicePlot,'all'))|sum(strcmp(choicePlot,'fwf'));

    if addToTex; write2tex(fileTex,1,'air-sea freshwater flux',2); end;

    %FW flux from ocean+ice:
    fld=-alldiag.SIatmFW_mean/1000;%conversion to m/s
    fld=fld*86400*1000;%conversion to mm/day
    cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]*0.06; title0='E-P-R to ocean+ice';
    if doAnomalies; cc=scaleAnom*[-1:0.1:1]*0.5; end;
    figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    myCaption={myYmeanTxt,'mean -- E-P-R from ocean+ice (mm/day)'};
    if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

    %FW flux from ocean:
    fld=-alldiag.oceFWflx_mean/1000;%conversion to m/s
    fld=fld*86400*1000;%conversion to mm/day
    cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]*0.06; title0='E-P-R to ocean';
    if doAnomalies; cc=scaleAnom*[-1:0.1:1]*0.5; end;
    figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    myCaption={myYmeanTxt,'mean -- E-P-R from ocean (mm/day)'};
    if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

    if multiTimes;
        %empmr from ocean+ice:
        fld=alldiag.SIatmFW_std*86400;%conversion to mm/day
        cc=[[0:5:25] 35 [50:25:200] [250 300]]*0.04; title0='std(E-P-R to ocean+ice)';
        if doAnomalies; cc=scaleAnom*[0:0.1:1]*0.5; end;
        figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        myCaption={myYmeanTxt,' standard deviation -- E-P-R to ocean+ice (W/m$^2$)'};
        if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

        %empmr from ocean:
        fld=alldiag.oceFWflx_std*86400;%conversion to mm/day
        cc=[[0:5:25] 35 [50:25:200] [250 300]]*0.04; title0='std(E-P-R to ocean)';
        if doAnomalies; cc=scaleAnom*[0:0.1:1]*0.5; end;
        figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        myCaption={myYmeanTxt,' standard deviation -- E-P-R to ocean (W/m$^2$)'};
        if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
    end;

    end;

    if sum(strcmp(choicePlot,'all'))|sum(strcmp(choicePlot,'tau'));

    if addToTex; write2tex(fileTex,1,'surface wind stress',2); end;

    %zonal wind stress:
    fld=alldiag.fldTZ_mean;
    cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/500; title0='zonal wind stress';
    if doAnomalies; cc=scaleAnom*[-1:0.1:1]*0.01; end;
    figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    myCaption={myYmeanTxt,'mean -- zonal wind stress (N/m$^2$)'};
    if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

    %meridional wind stress:
    fld=alldiag.fldTM_mean;
    cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/500; title0='meridional wind stress';
    if doAnomalies; cc=scaleAnom*[-1:0.1:1]*0.01; end;
    figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    myCaption={myYmeanTxt,'mean -- meridional wind stress (N/m$^2$)'};
    if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

    %fld=alldiag.curlTau_mean;
    %cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/5e8; title0='wind stress curl';
    %if doAnomalies; cc=scaleAnom*[-1:0.1:1]*0.01; end;
    %figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
    %myCaption={myYmeanTxt,'mean -- wind stress curl (N/m$^3$)'};
    %if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

    if multiTimes;
        %zonal wind stress:
        fld=alldiag.fldTZ_std;
        cc=[[0:5:25] 35 [50:25:200] [250 300]]/2000; title0='std(tauZ)';
        if doAnomalies; cc=scaleAnom*[0:0.1:1]*0.005; end;
        figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        myCaption={myYmeanTxt,'  standard deviation -- tauZ (W/m$^2$)'};
        if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

        %meridional wind stress:
        fld=alldiag.fldTM_std;
        cc=[[0:5:25] 35 [50:25:200] [250 300]]/2000; title0='std(tauM)';
        if doAnomalies; cc=scaleAnom*[0:0.1:1]*0.005; end;
        figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        myCaption={myYmeanTxt,' standard deviation -- tauM (W/m$^2$)'};
        if addToTex; write2tex(fileTex,2,myCaption,gcf); end;

        %fld=alldiag.curlTau_std;
        %cc=[[0:5:25] 35 [50:25:200] [250 300]]/1e9; title0='wind stress curl';
        %if doAnomalies; cc=scaleAnom*[-1:0.1:1]*0.01; end;
        %figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
        %myCaption={myYmeanTxt,'standard deviation -- tauCurl (N/m$^3$)'};
        %if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
    end;

    end;

end;


1	gforget	1.1
2	gforget	1.5	doOmit3Dfields=0;
3	gforget	1.6	if mygrid.memoryLimit~=0; doOmit3Dfields=1; end;
4	gforget	1.5
5	gforget	1.1	if userStep==1;%diags to be computed
6	gforget	1.2	%here _s stands for cumulative sum and _2s for cumulative sum of squares
7			%the _s should be stated first
8	gforget	1.7	listDiags=['SIatmQnt_s SIatmQnt_2s SIatmFW_s SIatmFW_2s oceQnet_s oceQnet_2s ' ...
9			'oceFWflx_s oceFWflx_2s fldTZ_s fldTZ_2s fldTM_s fldTM_2s ' ...
10			'curlTau_s curlTau_2s fldETAN_s fldETAN_2s ' ...
11			'fldSSH_s fldSSH_2s fldMLD_s fldMLD_2s'];
12	gforget	1.5	if ~doOmit3Dfields;
13	gforget	1.7	listDiags=[listDiags ' THETA_s THETA_2s SALT_s SALT_2s WVELMASS_s WVELMASS_2s'];
14	gforget	1.5	end;
15	gforget	1.4
16	gforget	1.1	elseif userStep==2;%input files and variables
17	gforget	1.5	listFlds={ 'SIatmQnt','SIatmFW ','oceQnet ','oceFWflx','oceTAUX','oceTAUY','ETAN','sIceLoad','MXLDEPTH'};
18			if ~doOmit3Dfields;
19			listFlds={listFlds{:} ,'THETA','SALT','WVELMASS'};
20			end;
21	gforget	1.1	listFldsNames=deblank(listFlds);
22	gforget	1.5	listFiles={'state_3d_set1','trsp_3d_set1','state_2d_set1','other_2d_set1'};
23			listSubdirs={[dirModel 'diags/OTHER/' ],[dirModel 'diags/STATE/' ],[dirModel 'diags/TRSP/' ]};
24	gforget	1.4
25			elseif userStep==3;%computation
26	gforget	1.1	%mask fields:
27			SIatmQnt=SIatmQnt.*mygrid.mskC(:,:,1);
28			SIatmFW=SIatmFW.*mygrid.mskC(:,:,1);
29			oceQnet=oceQnet.*mygrid.mskC(:,:,1);
30			oceFWflx=oceFWflx.*mygrid.mskC(:,:,1);
31			fldTX=oceTAUX.*mygrid.mskW(:,:,1);
32			fldTY=oceTAUY.*mygrid.mskS(:,:,1);
33			%compute Eastward/Northward wind stresses:
34			[fldTZ,fldTM]=calc_UEVNfromUXVY(fldTX,fldTY);
35			%compute wind stress curl:
36	gforget	1.6	%curlTau=calc_UV_curl(fldTX, fldTY,1 );%the doMask argument should not matter as msk was already applied
37			curlTau=NaN*fldTZ;
38	gforget	1.1	%mask and re-arrange fields:
39			fldETAN=ETAN.*mygrid.mskC(:,:,1);
40	gforget	1.7	fldSSH=(ETAN+sIceLoad/myparms.rhoconst).*mygrid.mskC(:,:,1);
41	gforget	1.1	fldMLD=MXLDEPTH.*mygrid.mskC(:,:,1);
42			%
43	gforget	1.5	if ~doOmit3Dfields;
44			THETA=THETA.*mygrid.mskC;
45			SALT=SALT.*mygrid.mskC;
46			WVELMASS=WVELMASS.*mygrid.mskC;
47			end;
48	gforget	1.2	%
49			if ii>1;
50			fileMatPrev=['diags_set_' tmp1 '_' num2str(listTimes(ii-1)) '.mat'];
51	gforget	1.4	listTimesBak=listTimes;
52	gforget	1.2	load([dirMat fileMatPrev]);
53	gforget	1.4	listTimes=listTimesBak;
54	gforget	1.2	end;
55			for jj=1:length(listDiags)/2;
56	gforget	1.7	myDiag=listDiags{1+2*(jj-1)}(1:end-2);
57	gforget	1.2	if ii==1;
58			eval([myDiag '_s=0*' myDiag ';']);
59			eval([myDiag '_2s=0*' myDiag '.^2;']);
60			end;
61			eval([myDiag '_s=' myDiag '_s+' myDiag ';']);
62			eval([myDiag '_2s=' myDiag '_2s+' myDiag '.^2;']);
63			end;
64
65	gforget	1.4	%===================== COMPUTATIONAL SEQUENCE ENDS =========================%
66			%===================== PLOTTING SEQUENCE BEGINS =========================%
67
68			elseif userStep==0;%loading / post-processing of mat files
69
70			%load last cumsum
71	gforget	1.11	alldiag=diags_read_from_mat(dirMat,[fileMat '_*.mat'],'',myparms.recInAve(2));
72	gforget	1.4	%load first cumsum
73			if myparms.recInAve(1)>1;
74	gforget	1.11	tmpdiag=diags_read_from_mat(dirMat,[fileMat '_*.mat'],'',myparms.recInAve(1)-1);
75	gforget	1.4	for ii=1:length(alldiag.listDiags);
76			tmp0=alldiag.listDiags{ii};
77			if ~strcmp(tmp0,'listTimes')&~strcmp(tmp0,'listSteps');
78			tmp1=getfield(alldiag,alldiag.listDiags{ii});
79			tmp2=getfield(tmpdiag,alldiag.listDiags{ii});
80			alldiag=setfield(alldiag,tmp0,tmp1-tmp2);
81			end;
82			end;
83			end;
84	gforget	1.7	%ensure backward compatibility
85			if ~isfield(alldiag,'WVELMASS_s'); alldiag.WVELMASS_s=NaN*alldiag.THETA_s; end;
86			if ~isfield(alldiag,'WVELMASS_2s'); alldiag.WVELMASS_2s=NaN*alldiag.THETA_2s; end;
87			if ~isfield(alldiag,'fldSSH_s'); alldiag.fldSSH_s=alldiag.fldETANLEADS_s; end;
88			if ~isfield(alldiag,'fldSSH_2s'); alldiag.fldSSH_2s=alldiag.fldETANLEADS_2s; end;
89			jj=find(strcmp(alldiag.listDiags,'fldETANLEADS_s'));
90			if ~isempty(jj); alldiag.listDiags{jj}='fldSSH_s'; end;
91			jj=find(strcmp(alldiag.listDiags,'fldETANLEADS_2s'));
92			if ~isempty(jj); alldiag.listDiags{jj}='fldSSH_2s'; end;
93	gforget	1.4	%
94			n=diff(myparms.recInAve)+1;
95	gforget	1.8	for jj=1:length(alldiag.listDiags)/2;
96			tmp0=alldiag.listDiags{1+2*(jj-1)};
97	gforget	1.4	if ~strcmp(tmp0,'listTimes')&~strcmp(tmp0,'listSteps');
98			tmp1=1/n*getfield(alldiag,tmp0);
99			tmp2=1/n*getfield(alldiag,[tmp0(1:end-1) '2s']);
100			tmp2=(tmp2-tmp1.^2);
101			tmp2=n/(n-1)*tmp2;
102			%tmp2(tmp2<0)=0;
103			tmp2=sqrt(tmp2);
104			alldiag=setfield(alldiag,[tmp0(1:end-2) '_mean'],tmp1);
105			alldiag=setfield(alldiag,[tmp0(1:end-2) '_std'],tmp2);
106			end;
107			end;
108
109			diagsWereLoaded=1
110
111			elseif userStep==-1;%plotting
112
113			if isempty(setDiagsParams);
114			choicePlot={'all'};
115			else;
116			choicePlot=setDiagsParams;
117			end;
118
119	gforget	1.6
120			%===== start with state variables
121
122			if sum(strcmp(choicePlot,'all'))\|sum(strcmp(choicePlot,'surface'));
123
124			if addToTex; write2tex(fileTex,1,'sea surface height',2); end;
125
126			%ETAN:
127			fld=alldiag.fldETAN_mean;
128			cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/100; title0='sea surface height (EXCLUDING ice)';
129			if doAnomalies; cc=scaleAnom[-1:0.1:1]0.05; end;
130			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
131			myCaption={myYmeanTxt,'mean -- sea surface height (EXCLUDING ice, in m)'};
132			if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
133
134			%ETANLEADS:
135	gforget	1.7	fld=alldiag.fldSSH_mean;
136	gforget	1.6	cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/100; title0='sea surface height (INCLUDING ice)';
137			if doAnomalies; cc=scaleAnom[-1:0.1:1]0.05; end;
138			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
139			myCaption={myYmeanTxt,'mean -- sea surface height (INCLUDING ice, in m)'};
140			if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
141
142			if multiTimes;
143			%ETAN:
144			fld=alldiag.fldETAN_std;
145			cc=[0:25:500]/2500; title0='std(ETAN)';
146			if doAnomalies; cc=scaleAnom[0:0.1:1]0.02; end;
147			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
148			myCaption={myYmeanTxt,' standard deviation -- sea surface height (EXCLUDING ice, in m)'};
149			if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
150
151			%ETANLEADS:
152	gforget	1.7	fld=alldiag.fldSSH_std;
153	gforget	1.6	cc=[0:25:500]/2500; title0='std(ETANLEADS)';
154			if doAnomalies; cc=scaleAnom[0:0.1:1]0.02; end;
155			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
156			myCaption={myYmeanTxt,' standard deviation -- sea surface height (INCLUDING ice, in m)'};
157			if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
158			end;
159
160			end;
161
162			if ( sum(strcmp(choicePlot,'all'))\|sum(strcmp(choicePlot,'subsrfc')) )&(~doOmit3Dfields);
163
164			if addToTex; write2tex(fileTex,1,'3D state variables',2); end;
165
166			cc_mean=1/100*[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]];
167			cc_std=1/250*[0:25:500];
168			kkList=[1 11 20 28 37 44];
169			vvList={'THETA','SALT','WVELMASS'};
170
171			for vv=1:length(vvList);
172			vvtxt=vvList{vv};
173			eval(['fld_mean=alldiag.' vvtxt '_mean;']);
174			eval(['fld_std=alldiag.' vvtxt '_std;']);
175			if strcmp(vvtxt,'WVELMASS');%convert into mm/day
176			fld_mean=fld_mean86400365/1e3;
177			fld_std=fld_std86400365/1e3;
178			end;
179			for kk=kkList;
180			if strcmp(vvtxt,'WVELMASS')&kk==1; kk=2; end;
181			if mygrid.RC(kk)>=-50; facD=0.5;
182			elseif mygrid.RC(kk)>=-150; facD=1;
183			elseif mygrid.RC(kk)>=-500; facD=2.5;
184			elseif mygrid.RC(kk)>=-2000; facD=10;
185			else; facD=20;
186			end;
187			%
188	heimbach	1.9	if strcmp(vvtxt,'THETA'); nm='temperature (in degC)'; facV=1;
189	gforget	1.6	elseif strcmp(vvtxt,'SALT'); nm='salinity (in psu)'; facV=10;
190			elseif strcmp(vvtxt,'WVELMASS'); nm='vertical velocity (in mm/year)'; facV=10;
191			else; error('not yet implemented');
192			end;
193			%
194
195			title0=sprintf('%s at %4dm',nm,round(-mygrid.RC(kk)));
196
197			%time mean map:
198			fld=fld_mean(:,:,kk).*mygrid.mskC(:,:,kk);
199			if doAnomalies;
200			cc=scaleAnom/facV/facD*cc_mean;
201			elseif strcmp(vvtxt,'WVELMASS');
202			cc=1/facV*cc_mean;
203			else;
204			cc=prctile(facV*fld,[2.5 97.5]);
205			cc=[floor(cc(1)):ceil(cc(end))]/facV;
206			%ensure at least 10 color levels
207			fac0=1;
208			while length(cc)<15;
209			fac0=fac0*2;
210			cc=prctile(fac0facVfld,[2.5 97.5]);
211			cc=[floor(cc(1)):ceil(cc(end))]/facV/fac0;
212			end;
213			%ensure at most 10 color levels
214			fac0=1;
215			while length(cc)>30;
216			fac0=fac0/2;
217			cc=prctile(fac0facVfld,[2.5 97.5]);
218			cc=[floor(cc(1)):ceil(cc(end))]/facV/fac0;
219			end;
220			end;
221			%
222			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
223			myCaption={myYmeanTxt,'mean -- ',title0};
224			if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
225
226	gforget	1.7	if multiTimes;
227	gforget	1.6	fld=fld_std(:,:,kk).*mygrid.mskC(:,:,kk);
228			cc=1/facV/facD*cc_std;
229			if strcmp(vvtxt,'WVELMASS'); cc=1/facV*cc_std; end;
230			if doAnomalies; cc=scaleAnom*cc; end;
231			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
232			myCaption={myYmeanTxt,' standard deviation -- ',title0};
233			if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
234			end;
235
236			end;%for kk=...
237			end;%for vv=...
238			end;%if ( sum(strcmp(...
239
240
241			%now do surface fluxes and forcing fields
242
243	gforget	1.4	if sum(strcmp(choicePlot,'all'))\|sum(strcmp(choicePlot,'qnet'));
244
245	gforget	1.6	if addToTex; write2tex(fileTex,1,'air-sea heat flux',2); end;
246
247	gforget	1.4	%qnet from ocean+ice:
248			fld=-alldiag.SIatmQnt_mean;
249			cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]; title0='QNET to ocean+ice';
250			if doAnomalies; cc=scaleAnom[-1:0.1:1]10; end;
251			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
252	heimbach	1.10	myCaption={myYmeanTxt,'mean -- QNET to ocean+ice (W/m$^2$)'};
253	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
254
255			%qnet to ocean:
256			fld=alldiag.oceQnet_mean;
257			cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]; title0='QNET to ocean';
258			if doAnomalies; cc=scaleAnom[-1:0.1:1]10; end;
259			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
260	heimbach	1.10	myCaption={myYmeanTxt,'mean -- QNET to ocean (W/m$^2$)'};
261	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
262
263			if multiTimes;
264			%qnet from ocean+ice:
265			fld=alldiag.SIatmQnt_std;
266			cc=[[0:5:25] 35 [50:25:200] [250 300]]; title0='std(QNET to ocean+ice)';
267			if doAnomalies; cc=scaleAnom[0:0.1:1]5; end;
268			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
269	heimbach	1.10	myCaption={myYmeanTxt,' standard deviation -- QNET to ocean+ice (W/m$^2$)'};
270	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
271
272			%qnet from ocean:
273			fld=alldiag.oceQnet_std;
274			cc=[[0:5:25] 35 [50:25:200] [250 300]]; title0='std(QNET to ocean)';
275			if doAnomalies; cc=scaleAnom[0:0.1:1]5; end;
276			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
277	heimbach	1.10	myCaption={myYmeanTxt,' standard deviation -- QNET to ocean (W/m$^2$)'};
278	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
279			end;
280
281			end;
282
283
284			if sum(strcmp(choicePlot,'all'))\|sum(strcmp(choicePlot,'fwf'));
285
286	heimbach	1.9	if addToTex; write2tex(fileTex,1,'air-sea freshwater flux',2); end;
287	gforget	1.6
288	gforget	1.4	%FW flux from ocean+ice:
289			fld=-alldiag.SIatmFW_mean/1000;%conversion to m/s
290			fld=fld864001000;%conversion to mm/day
291	heimbach	1.9	cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]*0.06; title0='E-P-R to ocean+ice';
292	gforget	1.4	if doAnomalies; cc=scaleAnom[-1:0.1:1]0.5; end;
293			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
294	heimbach	1.9	myCaption={myYmeanTxt,'mean -- E-P-R from ocean+ice (mm/day)'};
295	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
296
297			%FW flux from ocean:
298			fld=-alldiag.oceFWflx_mean/1000;%conversion to m/s
299			fld=fld864001000;%conversion to mm/day
300	heimbach	1.9	cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]*0.06; title0='E-P-R to ocean';
301	gforget	1.4	if doAnomalies; cc=scaleAnom[-1:0.1:1]0.5; end;
302			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
303	heimbach	1.9	myCaption={myYmeanTxt,'mean -- E-P-R from ocean (mm/day)'};
304	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
305
306			if multiTimes;
307			%empmr from ocean+ice:
308			fld=alldiag.SIatmFW_std*86400;%conversion to mm/day
309	heimbach	1.9	cc=[[0:5:25] 35 [50:25:200] [250 300]]*0.04; title0='std(E-P-R to ocean+ice)';
310	gforget	1.4	if doAnomalies; cc=scaleAnom[0:0.1:1]0.5; end;
311			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
312	heimbach	1.10	myCaption={myYmeanTxt,' standard deviation -- E-P-R to ocean+ice (W/m$^2$)'};
313	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
314
315			%empmr from ocean:
316			fld=alldiag.oceFWflx_std*86400;%conversion to mm/day
317	heimbach	1.9	cc=[[0:5:25] 35 [50:25:200] [250 300]]*0.04; title0='std(E-P-R to ocean)';
318	gforget	1.4	if doAnomalies; cc=scaleAnom[0:0.1:1]0.5; end;
319			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
320	heimbach	1.10	myCaption={myYmeanTxt,' standard deviation -- E-P-R to ocean (W/m$^2$)'};
321	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
322			end;
323
324			end;
325
326			if sum(strcmp(choicePlot,'all'))\|sum(strcmp(choicePlot,'tau'));
327
328	gforget	1.6	if addToTex; write2tex(fileTex,1,'surface wind stress',2); end;
329
330	gforget	1.4	%zonal wind stress:
331			fld=alldiag.fldTZ_mean;
332			cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/500; title0='zonal wind stress';
333			if doAnomalies; cc=scaleAnom[-1:0.1:1]0.01; end;
334			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
335	heimbach	1.10	myCaption={myYmeanTxt,'mean -- zonal wind stress (N/m$^2$)'};
336	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
337
338			%meridional wind stress:
339			fld=alldiag.fldTM_mean;
340			cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/500; title0='meridional wind stress';
341			if doAnomalies; cc=scaleAnom[-1:0.1:1]0.01; end;
342			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
343	heimbach	1.10	myCaption={myYmeanTxt,'mean -- meridional wind stress (N/m$^2$)'};
344	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
345
346	gforget	1.6	%fld=alldiag.curlTau_mean;
347			%cc=[[-250:50:-100] [-75 -50] [-35:10:35] [50 75] [100:50:250]]/5e8; title0='wind stress curl';
348			%if doAnomalies; cc=scaleAnom[-1:0.1:1]0.01; end;
349			%figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
350	heimbach	1.10	%myCaption={myYmeanTxt,'mean -- wind stress curl (N/m$^3$)'};
351	gforget	1.6	%if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
352	gforget	1.4
353			if multiTimes;
354			%zonal wind stress:
355			fld=alldiag.fldTZ_std;
356			cc=[[0:5:25] 35 [50:25:200] [250 300]]/2000; title0='std(tauZ)';
357			if doAnomalies; cc=scaleAnom[0:0.1:1]0.005; end;
358			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
359	heimbach	1.10	myCaption={myYmeanTxt,' standard deviation -- tauZ (W/m$^2$)'};
360	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
361
362			%meridional wind stress:
363			fld=alldiag.fldTM_std;
364			cc=[[0:5:25] 35 [50:25:200] [250 300]]/2000; title0='std(tauM)';
365			if doAnomalies; cc=scaleAnom[0:0.1:1]0.005; end;
366			figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
367	heimbach	1.10	myCaption={myYmeanTxt,' standard deviation -- tauM (W/m$^2$)'};
368	gforget	1.4	if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
369
370	gforget	1.6	%fld=alldiag.curlTau_std;
371			%cc=[[0:5:25] 35 [50:25:200] [250 300]]/1e9; title0='wind stress curl';
372			%if doAnomalies; cc=scaleAnom[-1:0.1:1]0.01; end;
373			%figureL; m_map_gcmfaces(fld,0,{'myCaxis',cc},{'do_m_coast',1},{'myTitle',title0});
374	heimbach	1.10	%myCaption={myYmeanTxt,'standard deviation -- tauCurl (N/m$^3$)'};
375	gforget	1.6	%if addToTex; write2tex(fileTex,2,myCaption,gcf); end;
376	gforget	1.4	end;
377
378			end;
379
380	gforget	1.1	end;
381	gforget	1.4
382