| 1 |
function [fldsIn]=diags_select(dirModel,dirMat,setDiags,lChunk,listChunk); |
| 2 |
%object: compute a set of basic diagnostics |
| 3 |
%input: dirModel is the model run directory |
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% dirMat is the directory where diagnozed .mat files will be saved |
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% -> set it to '' to use the default [dirModel 'mat/'] |
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% setDiags is the choice of diagnostics |
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% 'A') trasnports (see diags_set_A.m) |
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% 'B') air-sea fluxes |
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% 'C') state variables |
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% 'D') global and regional budgets |
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% 'LAYERS') T/S/RHO coordinate overturns |
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% 'user') is a placeholder for user diags additions |
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% lChunk states how many records are computed at once |
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% listChunk states which parts of the records should be |
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% computed (i0+1:i0+lChunk where i0~lTot/lChunk) |
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|
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%to do: add second optional output argument for fldsOut |
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|
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gcmfaces_global; |
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|
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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%create dirModel/mat if needed: |
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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|
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if lChunk==0; return; end; |
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|
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dirModel=[dirModel '/']; |
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|
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if isempty(dirMat); dirMat=[dirModel 'mat/']; end; |
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if isempty(dir(dirMat)); mkdir(dirMat); end; |
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|
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%list of subdirectories where to scan for output |
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listSubdirs={[dirMat 'BUDG/' ],[dirModel 'diags/BUDG/' ],[dirModel 'diags/OTHER/' ],... |
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[dirModel 'diags/STATE/' ],[dirModel 'diags/TRSP/'],[dirModel 'diags/' ]}; |
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|
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if isfield(myenv,'nctiles'); |
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use_nctiles=myenv.nctiles; |
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else; |
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use_nctiles=0; |
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end; |
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|
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setDiagsParams=[]; |
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if iscell(setDiags); |
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setDiagsParams={setDiags{2:end}}; |
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setDiags=setDiags{1}; |
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end; |
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|
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%%%%%%%%%%%%%%%%%%%%%% |
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%load grid and params: |
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%%%%%%%%%%%%%%%%%%%%%% |
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|
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gcmfaces_global; global myparms; |
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test0=~isempty(dir([dirMat 'diags_grid_parms.mat'])); |
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test1=~isempty(dir([dirMat 'basic_diags_ecco_mygrid.mat'])); |
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if test0;%load mygrid and myparms from file |
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eval(['load ' dirMat 'diags_grid_parms.mat;']); |
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elseif test1;%for backward compatibility |
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eval(['load ' dirMat 'basic_diags_ecco_mygrid.mat;']); |
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else; |
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error('could not find diags_grid_parms.mat'); |
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end; |
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|
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test0=~isempty(dir([dirMat 'diags_select_budget_list.mat'])); |
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if test0; |
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eval(['load ' dirMat 'diags_select_budget_list.mat;']); |
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else; |
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budget_list=1; |
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end; |
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myparms.budgetList=budget_list; |
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|
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%in case mygrid.memoryLimit=1, load the stuff that was not saved to diags_grid_parms.mat |
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if mygrid.memoryLimit==1; |
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list0={'hFacS','hFacW'}; |
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for iFld=1:length(list0); |
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eval(['mygrid.' list0{iFld} '=rdmds2gcmfaces([mygrid.dirGrid ''' list0{iFld} '*'']);']); |
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end; |
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% |
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mygrid.hFacCsurf=mygrid.hFacC; |
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for ff=1:mygrid.hFacC.nFaces; mygrid.hFacCsurf{ff}=mygrid.hFacC{ff}(:,:,1); end; |
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% |
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mskC=mygrid.hFacC; mskC(mskC==0)=NaN; mskC(mskC>0)=1; mygrid.mskC=mskC; |
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mskW=mygrid.hFacW; mskW(mskW==0)=NaN; mskW(mskW>0)=1; mygrid.mskW=mskW; |
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mskS=mygrid.hFacS; mskS(mskS==0)=NaN; mskS(mskS>0)=1; mygrid.mskS=mskS; |
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% |
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gcmfaces_lines_zonal; |
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mygrid.LATS=[mygrid.LATS_MASKS.lat]'; |
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[lonPairs,latPairs,names]=gcmfaces_lines_pairs; |
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gcmfaces_lines_transp(lonPairs,latPairs,names); |
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end; |
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|
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%%%%%%%%%%%%%% |
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%define diags: |
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%%%%%%%%%%%%%% |
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|
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userStep=1; |
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if ~isempty(which(['diags_set_' setDiags])); |
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eval(['diags_set_' setDiags]); |
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else; |
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diags_set_user; |
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end; |
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|
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%reformat listDiags to cell array: |
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jj=strfind(listDiags,' '); jj=[0 jj length(listDiags)+1]; |
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for ii=1:length(jj)-1; |
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tmp1=listDiags(jj(ii)+1:jj(ii+1)-1); |
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if ii==1; listDiags2={tmp1}; else; listDiags2{ii}=tmp1; end; |
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end; |
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listDiags=listDiags2; clear listDiags2; |
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|
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%%%%%%%%%%%%%% |
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%detect files: |
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%%%%%%%%%%%%%% |
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|
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userStep=2; |
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if ~isempty(which(['diags_set_' setDiags])); |
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eval(['diags_set_' setDiags]); |
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else; |
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diags_set_user; |
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end; |
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|
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listSubdirs={myenv.diagsdir,[dirModel 'diags/'],listSubdirs{:}}; |
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|
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%remove blanks in pkg/diagnostics flds name |
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listFlds=deblank(listFlds); |
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listFldsNames=deblank(listFldsNames); |
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|
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%set the list of diags times |
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[listTimes]=diags_list_times(listSubdirs,listFiles); |
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|
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%then scan directories (listSubdirs) for files (listFiles) |
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if ~use_nctiles; |
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for ii=1:length(listFiles); |
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tmp0=''; |
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for jj=1:length(listSubdirs); |
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tmp1=listFiles{ii}; tmp2=listSubdirs{jj}; |
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if ~isempty(dir([tmp2 '/' tmp1 '*meta'])); |
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tmp0=[tmp2 '/' tmp1]; listFiles{ii}=tmp0; |
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end; |
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end; |
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if isempty(tmp0); fprintf([' not found: ' tmp1 '\n']); listFiles{ii}=''; end; |
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end; |
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end; |
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|
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if use_nctiles; |
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for ii=1:length(listFlds); |
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tmp0=sum(strcmp(myenv.nctileslist,listFlds{ii})); |
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if tmp0==0; error([' not found: ' tmp1 '\n']); end; |
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if tmp0<1; error([' found several : ' tmp1 '\n']); end; |
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end; |
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end; |
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|
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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%loop over chunks |
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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|
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if isempty(strfind(dirMat,['diags_set_' setDiags])); |
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dirMat=[dirMat 'diags_set_' setDiags filesep]; |
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if isempty(dir(dirMat)); mkdir(dirMat); end; |
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end; |
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|
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for iChunk=listChunk; |
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|
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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%load records for computation: |
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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|
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lTot=length(listTimes); |
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i0=min(lChunk*(iChunk-1),lTot); |
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i1=min(i0+lChunk,lTot); |
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fldsIn=[]; |
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|
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tic; |
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|
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if ~use_nctiles; |
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tt=listTimes([i0+1:i1])'; |
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for iFile=1:length(listFiles); |
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fileFld=listFiles{iFile}; |
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if ~isempty(fileFld); |
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rdmds2workspace_list(fileFld,tt,listFlds); |
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for ii=1:length(meta.fldList); |
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tmp1=deblank(meta.fldList{ii}); |
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jj=find(strcmp(tmp1,listFlds)); |
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if ~isempty(jj); eval(['fldsIn.' listFldsNames{jj} '=' tmp1 ';']); end; |
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eval(['clear ' tmp1]); |
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end; |
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end; |
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end; |
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end; |
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|
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if use_nctiles; |
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tt=[i0+1:i1]'; |
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di=myenv.nctilesdir; |
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for iFld=1:length(listFlds); |
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nm=listFlds{iFld}; |
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fileIn=sprintf('%s/%s/%s',di,nm,nm); |
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fld=read_nctiles(fileIn,nm,tt); |
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eval(['fldsIn.' nm '=fld;']); |
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end; |
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end; |
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|
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fprintf([num2str(i1-i0) ' records loaded in ' num2str(toc) '\n']); |
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|
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%check that all fields were found, and otherwise reduce listFlds |
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listFldsIsPresent=zeros(1,length(listFldsNames)); |
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for iFld=1:length(listFldsNames); |
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if ~isfield(fldsIn,listFlds{iFld}); |
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fprintf([listFlds{iFld} ' is missing \n']); |
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else; |
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listFldsIsPresent(iFld)=1; |
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% fprintf([fldName ' was found \n']); |
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end; |
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end; |
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listFldsMissing={listFldsNames{find(~listFldsIsPresent)}}; |
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listFldsNames={listFldsNames{find(listFldsIsPresent)}}; |
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listFlds={listFlds{find(listFldsIsPresent)}}; |
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|
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%cut here for direct output\n'); |
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if nargout==1; |
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return; |
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end; |
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|
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%%%%%%%%%%%%%%%%%%%% |
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%do the computation: |
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%%%%%%%%%%%%%%%%%%%% |
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for ii=i0+1:i1; |
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|
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tic; |
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tt=listTimes(ii); |
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|
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%get data from buffer |
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for jj=1:length(listFldsNames); |
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if lChunk==1|length(listTimes)==1; |
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eval([listFldsNames{jj} '=fldsIn.' listFldsNames{jj} ';']); |
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else; |
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eval(['tmp1=size(fldsIn.' listFldsNames{jj} '{1});']); |
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if length(tmp1)==4; eval([listFldsNames{jj} '=fldsIn.' listFldsNames{jj} '(:,:,:,ii-i0);']); |
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else; eval([listFldsNames{jj} '=fldsIn.' listFldsNames{jj} '(:,:,ii-i0);']); |
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end; |
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end; |
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end; |
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for jj=1:length(listFldsMissing); |
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eval([listFldsMissing{jj} '=0;']); |
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end; |
| 244 |
|
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fprintf([num2str(ii-i0) '/' num2str(i1-i0) ' started \n']); |
| 246 |
|
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%generic output file name (that will potentially be overriden) |
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tmp1=setDiags; |
| 249 |
fileMat=['diags_set_' tmp1 '_' num2str(tt) '.mat']; |
| 250 |
|
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%the actual computations |
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userStep=3; |
| 253 |
if ~isempty(which(['diags_set_' setDiags])); |
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eval(['diags_set_' setDiags]); |
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else; |
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diags_set_user; |
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end; |
| 258 |
|
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fprintf([num2str(ii) '/' num2str(length(listTimes)) ' done in ' num2str(toc) '\n']); |
| 260 |
|
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%package results |
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onediag=[]; |
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onediag.listTimes=myparms.yearFirst(1)+tt*myparms.timeStep/86400/365.25; |
| 264 |
onediag.listSteps=tt; |
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for jj=1:length(listDiags); |
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eval(['onediag.' listDiags{jj} '=' listDiags{jj} ';']); |
| 267 |
end; |
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|
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%write to disk |
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diags_store_to_mat(dirMat,fileMat,onediag); |
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|
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end;%for ii=i0+1:i1; |
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|
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end;%for iChunk=listChunk; |
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|
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