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gforget |
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function []=basic_diags_ecco(dirModel,dirMat,setDiags,lChunk,iChunk,varargin); |
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%object: compute a set of basic diagnostics |
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%input: dirModel is the model run directory |
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% dirMat is the directory where diagnozed .mat files will be saved |
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% -> set it to '' to use the default [dirModel 'mat/'] |
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% setDiags is the choice of diagnostics |
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% 'A') trasnports (see diags_set_A.m) |
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% 'B') air-sea fluxes |
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% 'C') state variables |
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% 'D') global and regional budgets |
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% 'LAYERS') T/S/RHO coordinate overturns |
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% 'user') is a placeholder for user diags additions |
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% lChunk states how many records are computed at once |
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% iChunk states which part of the records should be |
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% computed (i0+1:i0+lChunk where i0~lTot/lChunk) |
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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%create dirModel/mat if needed: |
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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dirModel=[dirModel '/']; |
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if isempty(dirMat); dirMat=[dirModel 'mat/']; end; |
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if isempty(dir(dirMat)); eval(['!mkdir ' dirMat ';']); end; |
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%list of subdirectories where to scan for output |
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listSubdirs={[dirMat 'BUDG/' ],[dirModel 'diags/BUDG/' ],[dirModel 'diags/OTHER/' ],... |
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[dirModel 'diags/STATE/' ],[dirModel 'diags/TRSP/'],[dirModel 'diags/' ]}; |
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setDiagsParams=[]; |
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if iscell(setDiags); |
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setDiagsParams={setDiags{2:end}}; |
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setDiags=setDiags{1}; |
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end; |
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%%%%%%%%%%%%%%%%%%%%%% |
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%load grid and params: |
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%%%%%%%%%%%%%%%%%%%%%% |
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gcmfaces_global; global myparms; |
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test0=~isempty(dir([dirMat 'diags_grid_parms.mat'])); |
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test1=~isempty(dir([dirMat 'basic_diags_ecco_mygrid.mat'])); |
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if test0;%load mygrid and myparms from file |
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eval(['load ' dirMat 'diags_grid_parms.mat;']); |
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elseif test1;%for backward compatibility |
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eval(['load ' dirMat 'basic_diags_ecco_mygrid.mat;']); |
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else; |
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error('could not find diags_grid_parms.mat'); |
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end; |
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%%%%%%%%%%%%%% |
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%define diags: |
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%%%%%%%%%%%%%% |
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userStep=1; |
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if ~isempty(which(['diags_set_' setDiags])); |
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eval(['diags_set_' setDiags]); |
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else; |
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diags_set_user; |
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end; |
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%reformat listDiags to cell array: |
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jj=strfind(listDiags,' '); jj=[0 jj length(listDiags)+1]; |
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for ii=1:length(jj)-1; |
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tmp1=listDiags(jj(ii)+1:jj(ii+1)-1); |
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if ii==1; listDiags2={tmp1}; else; listDiags2{ii}=tmp1; end; |
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end; |
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listDiags=listDiags2; clear listDiags2; |
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%%%%%%%%%%%%%% |
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%detect files: |
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%%%%%%%%%%%%%% |
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userStep=2; |
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if ~isempty(which(['diags_set_' setDiags])); |
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eval(['diags_set_' setDiags]); |
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else; |
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diags_set_user; |
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end; |
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%remove blanks in pkg/diagnostics flds name |
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listFlds=deblank(listFlds); |
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listFldsNames=deblank(listFldsNames); |
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%set the list of diags times |
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[listTimes]=diags_list_times(listSubdirs,listFiles); |
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%then scan directories (listSubdirs) for files (listFiles) |
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for ii=1:length(listFiles); |
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tmp0=''; |
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for jj=1:length(listSubdirs); |
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tmp1=listFiles{ii}; tmp2=listSubdirs{jj}; |
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if ~isempty(dir([tmp2 '/' tmp1 '*meta'])); |
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tmp0=[tmp2 '/' tmp1]; listFiles{ii}=tmp0; |
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end; |
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end; |
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if isempty(tmp0); fprintf([' not found: ' tmp1 '\n']); listFiles{ii}=''; end; |
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end; |
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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%load records for computation: |
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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lTot=length(listTimes); |
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i0=min(lChunk*(iChunk-1),lTot); |
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i1=min(i0+lChunk,lTot); |
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tic; |
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tt=listTimes([i0+1:i1])'; |
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for iFile=1:length(listFiles); |
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fileFld=listFiles{iFile}; |
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if ~isempty(fileFld); |
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rdmds2workspace_list(fileFld,tt,listFlds); |
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for ii=1:length(meta.fldList); |
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tmp1=deblank(meta.fldList{ii}); |
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jj=find(strcmp(tmp1,listFlds)); |
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if ~isempty(jj); eval(['all_' listFldsNames{jj} '=' tmp1 ';']); end; |
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eval(['clear ' tmp1]); |
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end; |
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end; |
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end; |
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fprintf([num2str(i1-i0) ' records loaded in ' num2str(toc) '\n']); |
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%check that all fields were found, and otherwise reduce listFlds |
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listFldsIsPresent=zeros(1,length(listFldsNames)); |
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for iFld=1:length(listFldsNames); |
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fldName=['all_' listFldsNames{iFld}]; |
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if isempty(who(fldName)); |
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fprintf([fldName ' is missing \n']); |
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else; |
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listFldsIsPresent(iFld)=1; |
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% fprintf([fldName ' was found \n']); |
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end; |
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end; |
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listFldsNames={listFldsNames{find(listFldsIsPresent)}}; |
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listFlds={listFlds{find(listFldsIsPresent)}}; |
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%%%%%%%%%%%%%%%%%%%% |
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%do the computation: |
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%%%%%%%%%%%%%%%%%%%% |
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for ii=i0+1:i1; |
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tic; |
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tt=listTimes(ii); |
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%get data from buffer |
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for jj=1:length(listFldsNames); |
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if lChunk==1|length(listTimes)==1; |
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eval([listFldsNames{jj} '=all_' listFldsNames{jj} ';']); |
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else; |
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eval(['tmp1=size(all_' listFldsNames{jj} '{1});']); |
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if length(tmp1)==4; eval([listFldsNames{jj} '=all_' listFldsNames{jj} '(:,:,:,ii-i0);']); |
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else; eval([listFldsNames{jj} '=all_' listFldsNames{jj} '(:,:,ii-i0);']); |
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end; |
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end; |
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end; |
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fprintf([num2str(ii-i0) '/' num2str(i1-i0) ' started \n']); |
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%generic output file name (that will potentially be overriden) |
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tmp1=setDiags; |
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fileMat=['diags_set_' tmp1 '_' num2str(tt) '.mat']; |
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%the actual computations |
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userStep=3; |
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if ~isempty(which(['diags_set_' setDiags])); |
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eval(['diags_set_' setDiags]); |
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else; |
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diags_set_user; |
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end; |
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%package results |
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onediag=[]; |
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onediag.listTimes=myparms.yearFirst(1)+tt*myparms.timeStep/86400/365.25; |
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onediag.listSteps=tt; |
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for jj=1:length(listDiags); |
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eval(['onediag.' listDiags{jj} '=' listDiags{jj} ';']); |
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end; |
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%write to disk |
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diags_store_to_mat(dirMat,fileMat,onediag); |
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fprintf([num2str(ii) '/' num2str(length(listTimes)) ' done in ' num2str(toc) '\n']); |
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end; |
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