matlab_class/gcmfaces_diags/diags_pre_process.m

function [myswitch]=diags_pre_process(dirModel,dirMat);
%object : pre-processing for grid, model parameters, budgets, 
%         profiles, cost and control, etc.
%         To be called at the the start of diags_driver
%inputs : dirModel is the model run directory name
%         dirMat is the directory where diagnozed .mat files will be saved
%              -> set it to '' to use the default [dirModel 'mat/']
%output : myswitch is the set of switches (doBudget, doProfiles, doCost, doCtrl)
%              that are set here depending on the model output available

gcmfaces_global; global myparms;

dirModel=[dirModel '/'];
if isempty(dirMat); dirMat=[dirModel 'mat/']; else; dirMat=[dirMat '/']; end;

doBudget=~isempty(dir([dirModel 'diags/BUDG/']))
doProfiles=~isempty(dir([dirModel 'profiles/']))
doCost=~isempty(dir([dirModel 'barfiles/']))
doCtrl=~isempty(dir([dirModel 'ADXXfiles/']))

%output switches
myswitch.doBudget=doBudget;
myswitch.doProfiles=doProfiles;
myswitch.doCost=doCost;
myswitch.doCtrl=doCtrl;

%0) create dirMat if needed:
if isempty(dir(dirMat)); eval(['!mkdir ' dirMat ';']); end;

%1) pre-processing diags_grid_parms.mat
test0=isempty(dir([dirMat 'diags_grid_parms.mat']));
test1=isempty(dir([dirMat 'lock_mygrid']));

if test0&test1;%this process will do the pre-processing
    fprintf(['pre-processing : started for mygrid \n']);
    write2file([dirMat 'lock_mygrid'],1);
    %set the list of diags times
    listSubdirs={[dirMat 'BUDG/' ],[dirModel 'diags/BUDG/' ],[dirModel 'diags/OTHER/' ],...
        [dirModel 'diags/STATE/' ],[dirModel 'diags/TRSP/'],[dirModel 'diags/' ]};
    listFiles={'state_2d_set1','diags_2d_set1','monthly_2d_set1'};
    [listTimes]=diags_list_times(listSubdirs,listFiles);
    %set grid and model parameters:
    diags_grid_parms(listTimes);
    %save to disk:
    eval(['save ' dirMat 'diags_grid_parms.mat mygrid myparms;']);
    eval(['!\rm ' dirMat 'lock_mygrid']);
    test1=1;
    fprintf(['pre-processing : completed for mygrid \n\n']);
end;

while ~test1;%this process will wait for pre-processing to complete
    fprintf(['waiting 30s for removal of ' dirMat 'lock_mygrid \n']);
    fprintf(['- That should happen automatically after pre-processing is complete \n']);
    fprintf(['- But if a previous session was interupted, you may need to stop this one, \n ']);
    fprintf(['  remove ' dirMat 'lock_grid manually, and start over. \n\n']);
    test1=isempty(dir([dirMat 'lock_mygrid']));
    pause(30);
end;

%here we always reload the grid from dirMat to make sure the same one is used throughout
eval(['load ' dirMat 'diags_grid_parms.mat;']);

%2) pre-processing profiles
test0=isempty(dir([dirMat 'profiles/']));
test1=isempty(dir([dirMat 'lock_profiles']));

if test0&test1&doProfiles;%this process will do the pre-processing
    fprintf(['pre-processing : started for profiles \n']);
    write2file([dirMat 'lock_profiles'],1);
    eval(['!mkdir ' dirMat 'profiles/;']);
    eval(['!ln -s /net/nares/raid11/ecco-shared/ecco-version-4/input/input_insitu ' dirMat 'profiles/input']);
    eval(['!mkdir ' dirMat 'profiles/output']);
    if dirModel(1)~='/'; dirModelFull=[pwd '/' dirModel]; else; dirModelFull=dirModel; end;
    eval(['!ln -s ' dirModelFull 'profiles/*equi.data ' dirMat 'profiles/.']);
    listModel={'argo_feb2013_1992_to_2007*','argo_feb2013_2008_to_2010*',...
        'argo_feb2013_2011_to_2012*','ctd_feb2013*','itp_feb2013*',...
        'seals_feb2013*','xbt_feb2013*','climode_feb2013*'};
    MITprof_gcm2nc([dirMat 'profiles/'],listModel);
    eval(['!\rm ' dirMat 'lock_profiles']);
    test1=1;
    fprintf(['pre-processing : completed for profiles \n\n']);
end;

while ~test1&doProfiles;%this process will wait for pre-processing to complete
    fprintf(['waiting 30s for removal of ' dirMat 'lock_profiles \n']);
    fprintf(['- That should happen automatically after pre-processing is complete \n']);
    fprintf(['- But if a previous session was interupted, you may need to stop this one, \n ']);
    fprintf(['  remove ' dirMat 'lock_profiles manually, and start over. \n\n']);
    test1=isempty(dir([dirMat 'lock_profiles']));
    pause(30);
end;

%3) budget pre-processing
test0=isempty(dir([dirMat 'BUDG/']));
test1=isempty(dir([dirMat 'lock_budg']));%this aims at having only one process do the

if (test0&test1&doBudget);
    fprintf(['pre-processing : started for budget \n']);
    write2file([dirMat 'lock_budg'],1);
    eval(['!mkdir ' dirMat 'BUDG/;']);
    %compute time derivatives between snwpshots that will be
    %compared in budgets with the time mean flux terms
    v4_diff_snapshots(dirModel,dirMat,'budg2d_snap_set1');
    v4_diff_snapshots(dirModel,dirMat,'budg2d_snap_set2');
    v4_diff_snapshots(dirModel,dirMat,'budg2d_snap_set3');
    %v4_diff_snapshots(dirModel,dirMat,'budg3d_snap_set1');
    budget_list=1;
    for kk=1:length(mygrid.RC);
        tmp1=sprintf('%s/diags/BUDG/budg2d_snap_set3_%02i*',dirModel,kk);
        tmp2=~isempty(dir(tmp1));
        if tmp2;
            budget_list=[budget_list kk];
            tmp1=sprintf('budg2d_snap_set3_%02i',kk);
            v4_diff_snapshots(dirModel,dirMat,tmp1);
        end;
    end;
    eval(['save ' dirMat 'diags_select_budget_list.mat budget_list;']);
    eval(['!\rm ' dirMat 'lock_budg']);
    test1=1;
    fprintf(['pre-processing : completed for budget \n\n']);
end;

while ~test1&doBudget;%this process will wait for pre-processing to complete
    fprintf(['waiting 30s more for removal of ' dirMat 'lock_budg \n']);
    fprintf(['- That should happen automatically after pre-processing is complete \n']);
    fprintf(['- But if a previous session was interupted, you may need to stop this one, \n ']);
    fprintf(['  remove ' dirMat 'lock_budg manually, and start over. \n\n']);
    test1=isempty(dir([dirMat 'lock_budg']));
    pause(30);
end;

1	gforget	1.1	function [myswitch]=diags_pre_process(dirModel,dirMat);
2			%object : pre-processing for grid, model parameters, budgets,
3			% profiles, cost and control, etc.
4			% To be called at the the start of diags_driver
5			%inputs : dirModel is the model run directory name
6			% dirMat is the directory where diagnozed .mat files will be saved
7			% -> set it to '' to use the default [dirModel 'mat/']
8			%output : myswitch is the set of switches (doBudget, doProfiles, doCost, doCtrl)
9			% that are set here depending on the model output available
10
11			gcmfaces_global; global myparms;
12
13			dirModel=[dirModel '/'];
14			if isempty(dirMat); dirMat=[dirModel 'mat/']; else; dirMat=[dirMat '/']; end;
15
16			doBudget=~isempty(dir([dirModel 'diags/BUDG/']))
17			doProfiles=~isempty(dir([dirModel 'profiles/']))
18			doCost=~isempty(dir([dirModel 'barfiles/']))
19			doCtrl=~isempty(dir([dirModel 'ADXXfiles/']))
20
21			%output switches
22			myswitch.doBudget=doBudget;
23			myswitch.doProfiles=doProfiles;
24			myswitch.doCost=doCost;
25			myswitch.doCtrl=doCtrl;
26
27			%0) create dirMat if needed:
28			if isempty(dir(dirMat)); eval(['!mkdir ' dirMat ';']); end;
29
30			%1) pre-processing diags_grid_parms.mat
31			test0=isempty(dir([dirMat 'diags_grid_parms.mat']));
32			test1=isempty(dir([dirMat 'lock_mygrid']));
33
34			if test0&test1;%this process will do the pre-processing
35			fprintf(['pre-processing : started for mygrid \n']);
36			write2file([dirMat 'lock_mygrid'],1);
37			%set the list of diags times
38			listSubdirs={[dirMat 'BUDG/' ],[dirModel 'diags/BUDG/' ],[dirModel 'diags/OTHER/' ],...
39			[dirModel 'diags/STATE/' ],[dirModel 'diags/TRSP/'],[dirModel 'diags/' ]};
40			listFiles={'state_2d_set1','diags_2d_set1','monthly_2d_set1'};
41			[listTimes]=diags_list_times(listSubdirs,listFiles);
42			%set grid and model parameters:
43			diags_grid_parms(listTimes);
44			%save to disk:
45			eval(['save ' dirMat 'diags_grid_parms.mat mygrid myparms;']);
46			eval(['!\rm ' dirMat 'lock_mygrid']);
47			test1=1;
48			fprintf(['pre-processing : completed for mygrid \n\n']);
49			end;
50
51			while ~test1;%this process will wait for pre-processing to complete
52			fprintf(['waiting 30s for removal of ' dirMat 'lock_mygrid \n']);
53	gforget	1.2	fprintf(['- That should happen automatically after pre-processing is complete \n']);
54			fprintf(['- But if a previous session was interupted, you may need to stop this one, \n ']);
55			fprintf([' remove ' dirMat 'lock_grid manually, and start over. \n\n']);
56	gforget	1.1	test1=isempty(dir([dirMat 'lock_mygrid']));
57			pause(30);
58			end;
59
60			%here we always reload the grid from dirMat to make sure the same one is used throughout
61			eval(['load ' dirMat 'diags_grid_parms.mat;']);
62
63			%2) pre-processing profiles
64			test0=isempty(dir([dirMat 'profiles/']));
65			test1=isempty(dir([dirMat 'lock_profiles']));
66
67			if test0&test1&doProfiles;%this process will do the pre-processing
68			fprintf(['pre-processing : started for profiles \n']);
69			write2file([dirMat 'lock_profiles'],1);
70			eval(['!mkdir ' dirMat 'profiles/;']);
71			eval(['!ln -s /net/nares/raid11/ecco-shared/ecco-version-4/input/input_insitu ' dirMat 'profiles/input']);
72			eval(['!mkdir ' dirMat 'profiles/output']);
73			if dirModel(1)~='/'; dirModelFull=[pwd '/' dirModel]; else; dirModelFull=dirModel; end;
74			eval(['!ln -s ' dirModelFull 'profiles/*equi.data ' dirMat 'profiles/.']);
75	gforget	1.4	listModel={'argo_feb2013_1992_to_2007','argo_feb2013_2008_to_2010',...
76	gforget	1.3	'argo_feb2013_2011_to_2012','ctd_feb2013','itp_feb2013*',...
77			'seals_feb2013','xbt_feb2013','climode_feb2013*'};
78	gforget	1.1	MITprof_gcm2nc([dirMat 'profiles/'],listModel);
79			eval(['!\rm ' dirMat 'lock_profiles']);
80			test1=1;
81			fprintf(['pre-processing : completed for profiles \n\n']);
82			end;
83
84			while ~test1&doProfiles;%this process will wait for pre-processing to complete
85			fprintf(['waiting 30s for removal of ' dirMat 'lock_profiles \n']);
86	gforget	1.2	fprintf(['- That should happen automatically after pre-processing is complete \n']);
87			fprintf(['- But if a previous session was interupted, you may need to stop this one, \n ']);
88			fprintf([' remove ' dirMat 'lock_profiles manually, and start over. \n\n']);
89	gforget	1.1	test1=isempty(dir([dirMat 'lock_profiles']));
90			pause(30);
91			end;
92
93			%3) budget pre-processing
94			test0=isempty(dir([dirMat 'BUDG/']));
95			test1=isempty(dir([dirMat 'lock_budg']));%this aims at having only one process do the
96
97			if (test0&test1&doBudget);
98			fprintf(['pre-processing : started for budget \n']);
99			write2file([dirMat 'lock_budg'],1);
100			eval(['!mkdir ' dirMat 'BUDG/;']);
101			%compute time derivatives between snwpshots that will be
102			%compared in budgets with the time mean flux terms
103			v4_diff_snapshots(dirModel,dirMat,'budg2d_snap_set1');
104			v4_diff_snapshots(dirModel,dirMat,'budg2d_snap_set2');
105			v4_diff_snapshots(dirModel,dirMat,'budg2d_snap_set3');
106			%v4_diff_snapshots(dirModel,dirMat,'budg3d_snap_set1');
107			budget_list=1;
108			for kk=1:length(mygrid.RC);
109			tmp1=sprintf('%s/diags/BUDG/budg2d_snap_set3_%02i*',dirModel,kk);
110			tmp2=~isempty(dir(tmp1));
111			if tmp2;
112			budget_list=[budget_list kk];
113			tmp1=sprintf('budg2d_snap_set3_%02i',kk);
114			v4_diff_snapshots(dirModel,dirMat,tmp1);
115			end;
116			end;
117			eval(['save ' dirMat 'diags_select_budget_list.mat budget_list;']);
118			eval(['!\rm ' dirMat 'lock_budg']);
119			test1=1;
120			fprintf(['pre-processing : completed for budget \n\n']);
121			end;
122
123			while ~test1&doBudget;%this process will wait for pre-processing to complete
124			fprintf(['waiting 30s more for removal of ' dirMat 'lock_budg \n']);
125	gforget	1.2	fprintf(['- That should happen automatically after pre-processing is complete \n']);
126			fprintf(['- But if a previous session was interupted, you may need to stop this one, \n ']);
127			fprintf([' remove ' dirMat 'lock_budg manually, and start over. \n\n']);
128	gforget	1.1	test1=isempty(dir([dirMat 'lock_budg']));
129			pause(30);
130			end;
131