1 |
gforget |
1.8 |
function [myswitch]=diags_pre_process(dirModel,dirMat,doInteractive); |
2 |
gforget |
1.10 |
%object : pre-processing for grid, model parameters, budgets, |
3 |
gforget |
1.8 |
% profiles, cost and control, etc if required |
4 |
|
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%input : dirModel is the directory containing 'diags/' or 'nctiles/' |
5 |
|
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% dirMat is the directory where diagnostics results will be saved |
6 |
|
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% if isempty(dirMat) then [dirModel 'mat/'] is used by default |
7 |
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%(optional) doInteractive=1 allows users to specify parameters interactively |
8 |
|
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% doInteractive = 0 (default) uses ECCO v4 parameters |
9 |
|
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% and omits budgets and model-data misfits analyses |
10 |
|
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%output : myswitch is the set of switches (doBudget, doProfiles, doCost, doCtrl) |
11 |
|
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% that are set here depending on the model output available |
12 |
gforget |
1.1 |
|
13 |
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gcmfaces_global; global myparms; |
14 |
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|
15 |
gforget |
1.12 |
dirModel=fullfile(dirModel,filesep); |
16 |
|
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if isempty(dirMat); dirMat=fullfile(dirModel,'mat',filesep); else; dirMat=fullfile(dirMat,filesep); end; |
17 |
gforget |
1.8 |
if isempty(who('doInteractive')); doInteractive=0; end; |
18 |
gforget |
1.1 |
|
19 |
gforget |
1.6 |
%detect which types of files are avaiable |
20 |
gforget |
1.19 |
test0=isdir([dirModel 'diags'])|~isempty(dir([dirModel 'state_2d_set1*'])); |
21 |
gforget |
1.17 |
test1=~isempty(dir([dirModel 'nctiles']))|~isempty(dir([dirModel 'nctiles_climatology'])); |
22 |
gforget |
1.10 |
if test0&test1&doInteractive; |
23 |
|
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myenv.nctiles=input('select to use binaries (0) or nctiles (1) files\n'); |
24 |
gforget |
1.8 |
elseif test1; |
25 |
gforget |
1.10 |
myenv.nctiles=1; |
26 |
gforget |
1.6 |
elseif test0; |
27 |
gforget |
1.10 |
myenv.nctiles=0; |
28 |
gforget |
1.6 |
else; |
29 |
gforget |
1.10 |
error('no files (diags/ or nctiles/) were found\n'); |
30 |
gforget |
1.6 |
end |
31 |
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|
32 |
gforget |
1.15 |
if ~myenv.nctiles;%only works with binaries |
33 |
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dirSnap=fullfile(dirModel,'diags',filesep); |
34 |
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doBudget=~isempty(dir([dirSnap 'budg2d_snap_set1*'])); |
35 |
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if ~doBudget; |
36 |
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dirSnap=fullfile(dirModel,'diags',filesep,'BUDG',filesep); |
37 |
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doBudget=~isempty(dir([dirSnap 'budg2d_snap_set1*'])); |
38 |
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end; |
39 |
gforget |
1.19 |
if ~doBudget; |
40 |
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dirSnap=dirModel; |
41 |
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doBudget=~isempty(dir([dirSnap 'budg2d_snap_set1*'])); |
42 |
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end; |
43 |
gforget |
1.15 |
|
44 |
|
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doCost=~isempty(dir([dirModel 'barfiles' filesep 'm_eta_day.*.data'])); |
45 |
|
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doCost=doCost|~isempty(dir([dirModel 'm_eta_day.*.data'])); |
46 |
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|
47 |
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doCtrl=~isempty(dir([dirModel 'ADXXfiles' filesep 'xx*.effective.*'])); |
48 |
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doCtrl=doCtrl|~isempty(dir([dirModel 'xx*.effective.*'])); |
49 |
gforget |
1.8 |
else; |
50 |
gforget |
1.15 |
dirSnap=fullfile(dirModel,'diags',filesep); |
51 |
gforget |
1.10 |
doBudget=0; |
52 |
|
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doCost=0; |
53 |
|
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doCtrl=0; |
54 |
gforget |
1.8 |
end; |
55 |
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|
56 |
gforget |
1.12 |
doProfiles=~isempty(dir([dirModel 'MITprof' filesep])); |
57 |
gforget |
1.8 |
preprocessProfiles=0; |
58 |
gforget |
1.14 |
myenv.profiles=fullfile(dirModel,'MITprof',filesep); |
59 |
gforget |
1.8 |
if ~doProfiles; |
60 |
gforget |
1.12 |
doProfiles=~isempty(dir([dirModel 'profiles' filesep])); |
61 |
gforget |
1.10 |
preprocessProfiles=1; |
62 |
gforget |
1.14 |
myenv.profiles=fullfile(dirMat,'profiles',filesep,'output',filesep); |
63 |
gforget |
1.8 |
end; |
64 |
gforget |
1.1 |
|
65 |
|
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%output switches |
66 |
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myswitch.doBudget=doBudget; |
67 |
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myswitch.doProfiles=doProfiles; |
68 |
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myswitch.doCost=doCost; |
69 |
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myswitch.doCtrl=doCtrl; |
70 |
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|
71 |
gforget |
1.15 |
disp(myswitch); |
72 |
|
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if doInteractive; |
73 |
|
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test0=input('edit switches (1) or proceed (0)?\n'); |
74 |
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while test0; |
75 |
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test0=input('type modification (e.g. as ''myswitch.doBudget=1;'') or hit return to stop editing.\n'); |
76 |
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if ~isempty(test0); eval(test0); disp(myswitch); end; |
77 |
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end; |
78 |
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end; |
79 |
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|
80 |
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|
81 |
gforget |
1.6 |
%set the list of diags directories and files |
82 |
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if myenv.nctiles; |
83 |
gforget |
1.14 |
if isdir(fullfile(dirModel,'nctiles',filesep)); |
84 |
|
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listSubdirs={fullfile(dirModel,'nctiles',filesep)}; |
85 |
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elseif isdir(fullfile(dirModel,'nctiles_climatology',filesep)); |
86 |
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listSubdirs={fullfile(dirModel,'nctiles_climatology',filesep)}; |
87 |
gforget |
1.11 |
end; |
88 |
|
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|
89 |
gforget |
1.6 |
listFiles=dir(listSubdirs{1}); listFiles={listFiles(:).name}; |
90 |
|
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%remove irrelevant files/dirs |
91 |
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test1=ones(size(listFiles)); |
92 |
|
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for kk=1:length(listFiles); |
93 |
gforget |
1.12 |
tmp1=fullfile(listSubdirs{1},listFiles{kk},[listFiles{kk} '*.nc']); |
94 |
gforget |
1.10 |
test1(kk)=~isempty(dir(tmp1)); |
95 |
gforget |
1.6 |
end; |
96 |
|
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listFiles={listFiles{find(test1)}}; |
97 |
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%store in myparms for later use |
98 |
|
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myenv.nctilesdir=listSubdirs{1}; |
99 |
|
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myenv.nctileslist=listFiles; |
100 |
gforget |
1.12 |
% |
101 |
|
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myenv.diagsdir=''; |
102 |
|
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else; |
103 |
gforget |
1.14 |
myenv.diagsdir=fullfile(dirModel,['diags' filesep]); |
104 |
gforget |
1.19 |
if isempty(dir([myenv.diagsdir '*.data']))&... |
105 |
|
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isempty(dir([myenv.diagsdir 'STATE' filesep '*.data'])); |
106 |
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myenv.diagsdir=fullfile(dirModel); |
107 |
|
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end; |
108 |
gforget |
1.12 |
% |
109 |
|
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myenv.nctilesdir=''; |
110 |
|
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myenv.nctileslist={}; |
111 |
gforget |
1.6 |
end; |
112 |
gforget |
1.14 |
myenv.matdir=fullfile(dirMat); |
113 |
gforget |
1.6 |
|
114 |
gforget |
1.1 |
%0) create dirMat if needed: |
115 |
gforget |
1.7 |
if isempty(dir(dirMat)); mkdir(dirMat); end; |
116 |
gforget |
1.1 |
|
117 |
|
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%1) pre-processing diags_grid_parms.mat |
118 |
|
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test0=isempty(dir([dirMat 'diags_grid_parms.mat'])); |
119 |
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test1=isempty(dir([dirMat 'lock_mygrid'])); |
120 |
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|
121 |
|
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if test0&test1;%this process will do the pre-processing |
122 |
gforget |
1.8 |
fprintf(['pre-processing : started for mygrid, myparms \n']); |
123 |
gforget |
1.1 |
write2file([dirMat 'lock_mygrid'],1); |
124 |
|
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%set the list of diags times |
125 |
gforget |
1.10 |
[listTimes]=diags_list_times; |
126 |
gforget |
1.1 |
%set grid and model parameters: |
127 |
gforget |
1.8 |
diags_grid_parms(listTimes,doInteractive); |
128 |
gforget |
1.1 |
%save to disk: |
129 |
gforget |
1.10 |
%if doInteractive; |
130 |
|
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eval(['save ' dirMat 'diags_grid_parms.mat mygrid myparms;']); |
131 |
|
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%end; |
132 |
gforget |
1.7 |
delete([dirMat 'lock_mygrid']); |
133 |
gforget |
1.1 |
test1=1; |
134 |
gforget |
1.8 |
fprintf(['pre-processing : completed for mygrid, myparms \n\n']); |
135 |
gforget |
1.1 |
end; |
136 |
|
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|
137 |
gforget |
1.6 |
%here I should test that files are indeed found (may have been moved) |
138 |
|
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|
139 |
gforget |
1.1 |
while ~test1;%this process will wait for pre-processing to complete |
140 |
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fprintf(['waiting 30s for removal of ' dirMat 'lock_mygrid \n']); |
141 |
gforget |
1.2 |
fprintf(['- That should happen automatically after pre-processing is complete \n']); |
142 |
|
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fprintf(['- But if a previous session was interupted, you may need to stop this one, \n ']); |
143 |
gforget |
1.14 |
fprintf([' remove ' dirMat 'lock_mygrid manually, and start over. \n\n']); |
144 |
gforget |
1.1 |
test1=isempty(dir([dirMat 'lock_mygrid'])); |
145 |
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pause(30); |
146 |
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end; |
147 |
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|
148 |
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%here we always reload the grid from dirMat to make sure the same one is used throughout |
149 |
gforget |
1.10 |
eval(['load ' dirMat 'diags_grid_parms.mat;']); |
150 |
gforget |
1.1 |
|
151 |
|
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%2) pre-processing profiles |
152 |
|
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test0=isempty(dir([dirMat 'profiles/'])); |
153 |
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test1=isempty(dir([dirMat 'lock_profiles'])); |
154 |
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|
155 |
gforget |
1.8 |
if test0&test1&doProfiles&preprocessProfiles;%this process will do the pre-processing |
156 |
gforget |
1.1 |
fprintf(['pre-processing : started for profiles \n']); |
157 |
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write2file([dirMat 'lock_profiles'],1); |
158 |
gforget |
1.7 |
mkdir([dirMat 'profiles/']); |
159 |
gforget |
1.14 |
mkdir([dirMat 'profiles/input/']); |
160 |
|
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mkdir([dirMat 'profiles/output/']); |
161 |
gforget |
1.15 |
|
162 |
gforget |
1.19 |
listModel=dir([dirModel '*.nc']); |
163 |
|
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listModel={listModel(:).name}; |
164 |
|
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for ff=1:length(listModel); |
165 |
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copyfile([dirModel listModel{ff}],[dirMat 'profiles/input/' listModel{ff}]); |
166 |
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end; |
167 |
gforget |
1.15 |
|
168 |
gforget |
1.1 |
if dirModel(1)~='/'; dirModelFull=[pwd '/' dirModel]; else; dirModelFull=dirModel; end; |
169 |
gforget |
1.10 |
% NOTE: if on DOS system change ln to mklink |
170 |
gforget |
1.7 |
system(['ln -s ' dirModelFull 'profiles/*equi.data ' dirMat 'profiles/.']); |
171 |
gforget |
1.18 |
listModel=dir([dirMat 'profiles/input/*.nc']) |
172 |
|
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listModel={listModel(:).name}; |
173 |
|
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for ff=1:length(listModel); listModel{ff}=[listModel{ff}(1:end-3) '*']; end; |
174 |
|
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if ~isempty(listModel); |
175 |
|
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MITprof_gcm2nc([dirMat 'profiles/'],listModel); |
176 |
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else; |
177 |
|
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warning('no MITprof files wer found'); |
178 |
|
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end; |
179 |
gforget |
1.7 |
delete([dirMat 'lock_profiles']); |
180 |
gforget |
1.1 |
test1=1; |
181 |
|
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fprintf(['pre-processing : completed for profiles \n\n']); |
182 |
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end; |
183 |
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|
184 |
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while ~test1&doProfiles;%this process will wait for pre-processing to complete |
185 |
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fprintf(['waiting 30s for removal of ' dirMat 'lock_profiles \n']); |
186 |
gforget |
1.2 |
fprintf(['- That should happen automatically after pre-processing is complete \n']); |
187 |
|
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fprintf(['- But if a previous session was interupted, you may need to stop this one, \n ']); |
188 |
|
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fprintf([' remove ' dirMat 'lock_profiles manually, and start over. \n\n']); |
189 |
gforget |
1.1 |
test1=isempty(dir([dirMat 'lock_profiles'])); |
190 |
|
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pause(30); |
191 |
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end; |
192 |
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|
193 |
|
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%3) budget pre-processing |
194 |
gforget |
1.12 |
test0=isempty(dir([dirMat 'BUDG'])); |
195 |
gforget |
1.1 |
test1=isempty(dir([dirMat 'lock_budg']));%this aims at having only one process do the |
196 |
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|
197 |
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if (test0&test1&doBudget); |
198 |
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fprintf(['pre-processing : started for budget \n']); |
199 |
|
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write2file([dirMat 'lock_budg'],1); |
200 |
gforget |
1.12 |
mkdir([dirMat 'BUDG']); |
201 |
gforget |
1.15 |
%compute time derivatives between snapshots that will be |
202 |
gforget |
1.1 |
%compared in budgets with the time mean flux terms |
203 |
gforget |
1.15 |
tmp1=fullfile(dirSnap,'budg3d_snap_set1*meta'); |
204 |
|
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test3d=~isempty(dir(tmp1)); |
205 |
|
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tmp1=fullfile(dirSnap,'budg3d_snap_set1*meta'); |
206 |
|
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test3d=test3d|~isempty(dir(tmp1)); |
207 |
gforget |
1.16 |
tmp1=fullfile(dirSnap,'geothermalFlux.bin'); |
208 |
|
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testGeothermalFlux=~isempty(dir(tmp1)); |
209 |
gforget |
1.15 |
diags_diff_snapshots(dirSnap,dirMat,'budg2d_snap_set1'); |
210 |
gforget |
1.13 |
if ~test3d; |
211 |
gforget |
1.15 |
diags_diff_snapshots(dirSnap,dirMat,'budg2d_snap_set2'); |
212 |
gforget |
1.16 |
if testGeothermalFlux; diags_budg_geothermal(dirSnap,dirMat,'budg2d_snap_set2'); end; |
213 |
gforget |
1.13 |
else; |
214 |
gforget |
1.15 |
diags_diff_snapshots(dirSnap,dirMat,'budg3d_snap_set1'); |
215 |
gforget |
1.16 |
if testGeothermalFlux; diags_budg_geothermal(dirSnap,dirMat,'budg3d_snap_set1'); end; |
216 |
gforget |
1.13 |
end; |
217 |
gforget |
1.1 |
budget_list=1; |
218 |
|
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for kk=1:length(mygrid.RC); |
219 |
gforget |
1.15 |
tmp1=sprintf('%s/budg2d_snap_set3_%02i*',dirSnap,kk); |
220 |
gforget |
1.1 |
tmp2=~isempty(dir(tmp1)); |
221 |
|
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if tmp2; |
222 |
|
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budget_list=[budget_list kk]; |
223 |
|
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tmp1=sprintf('budg2d_snap_set3_%02i',kk); |
224 |
gforget |
1.15 |
diags_diff_snapshots(dirSnap,dirMat,tmp1); |
225 |
gforget |
1.16 |
if testGeothermalFlux; diags_budg_geothermal(dirSnap,dirMat,tmp1); end; |
226 |
gforget |
1.1 |
end; |
227 |
|
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end; |
228 |
|
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eval(['save ' dirMat 'diags_select_budget_list.mat budget_list;']); |
229 |
gforget |
1.7 |
delete([dirMat 'lock_budg']); |
230 |
gforget |
1.1 |
test1=1; |
231 |
|
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fprintf(['pre-processing : completed for budget \n\n']); |
232 |
|
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end; |
233 |
|
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|
234 |
|
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while ~test1&doBudget;%this process will wait for pre-processing to complete |
235 |
|
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fprintf(['waiting 30s more for removal of ' dirMat 'lock_budg \n']); |
236 |
gforget |
1.2 |
fprintf(['- That should happen automatically after pre-processing is complete \n']); |
237 |
|
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fprintf(['- But if a previous session was interupted, you may need to stop this one, \n ']); |
238 |
|
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fprintf([' remove ' dirMat 'lock_budg manually, and start over. \n\n']); |
239 |
gforget |
1.1 |
test1=isempty(dir([dirMat 'lock_budg'])); |
240 |
|
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pause(30); |
241 |
|
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end; |
242 |
|
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|
243 |
gforget |
1.10 |
%set budget list |
244 |
|
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myparms.budgetList=1; |
245 |
|
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if ~isempty(dir([dirMat 'diags_select_budget_list.mat'])); |
246 |
|
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eval(['load ' dirMat 'diags_select_budget_list.mat;']); |
247 |
|
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myparms.budgetList=budget_list; |
248 |
|
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end; |