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|
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---- common to all matlab sessions ---- |
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|
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0) login as guest |
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|
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1) open web browser, and download setup_gcmfaces_and_mitprof.csh |
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from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/ |
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|
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note : |
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for step 1, please be sure to use the download button |
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of the browser rather than e.g. wget that can conflict |
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with the behavior of the CVS web interface |
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|
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2) open terminal window, and proceed to download codes: |
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csh |
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mkdir iap-idma |
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mv Downloads/setup_gcmfaces_and_mitprof.csh iap-idma/ |
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cd iap-idma |
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source ./setup_gcmfaces_and_mitprof.csh |
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|
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notes : |
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disk space requirement ~ 800M (plus class specific items) |
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matlab requirement > 2011 (for native netcdf implementation) |
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|
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---- for class #1 ---- |
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|
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1,2) see 'common to all classes' above |
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|
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3) download idma_float_plot.m from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/comm/course-idma2015/computing/ |
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|
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4) in terminal window |
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mv ~/Downloads/idma_float_plot.m ~/iap-idma/. |
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|
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5) download Argo etc |
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cd ~/iap-idma |
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mkdir release1 |
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wget --recursive ftp://mit.ecco-group.org/gforget/MITprof |
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mv mit.ecco-group.org/gforget/MITprof release1/. |
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|
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6) start matlab and run idma_float_plot.m |
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matlab |
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[p]=idma_float_plot('2900828'); |
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|
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notes : |
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disk space requirement ~ 6.4G (plus 0.8G from steps 1,2) |
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start matlab at command line : matlab -nodesktop |
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|
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---- for class #2 ---- |
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|
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1,2) see 'common to all classes' above |
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|
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3) start matlab and run gcmfaces_demo |
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cd ~/iap-idma |
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matlab |
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addpath gcmfaces |
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gcmfaces_demo |
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exit |
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|
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4) download ECCO climatology |
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cd ~/iap-idma |
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mkdir release1 |
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|
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/THETA |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/SALT |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/UVELMASS |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/VVELMASS |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'ADVx_*' |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'ADVy_*' |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'DFxE_*' |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'DFyE_*' |
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mv mit.ecco-group.org/gforget/nctiles_climatology release1/. |
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|
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5) start matlab and run example_transports (or re-run gcmfaces_demo). |
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cd ~/iap-idma |
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matlab |
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addpath gcmfaces |
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gcmfaces_global |
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diags=example_transports('v4'); |
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example_transports_disp(diags); |
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|
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---- for class #4 ---- |
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|
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1) open web browser, and download setup_these_exps.csh |
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from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/verification/ |
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|
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note : |
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for step 1, please be sure to use the download button |
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of the browser rather than e.g. wget that can conflict |
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with the behavior of the CVS web interface |
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|
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2) open terminal window, install MITgcm: |
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|
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mkdir iap-idma |
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cd iap-idma |
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csh |
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setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
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cvs login |
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( enter the CVS password: "cvsanon" ) |
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cvs co -P MITgcm_verif_basic |
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|
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3) install the ECCO v4 setups |
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|
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cd ~/iap-idma/MITgcm/verification |
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mv ~/Downloads/setup_these_exps.csh . |
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source ./setup_these_exps.csh |
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mv global_oce_tmp_download/global_oce_* . |
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rm -rf global_oce_tmp_download |
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|
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4) run the ECCO v4 mini benchmark |
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|
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./testreport -t global_oce_cs32 |
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|
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5) quick output plot |
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|
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cd ~/iap-idma |
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matlab -nodesktop |
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addpath gcmfaces |
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gcmfaces_global |
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|
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cd ~/iap-idma/MITgcm/verification/global_oce_cs32/run |
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grid_load('./',6,'compact'); |
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THETA=rdmds2gcmfaces('T.0000000008'); |
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figureL; qwckplot(THETA(:,:,1)); colorbar; |
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|
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note : |
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the matlab software needed for item #5 is assumed to have been |
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installed according to 'common to all matlab sessions' |
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|
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---- for class #5 ---- |
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|
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1,2) same as class #4 except with |
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cvs co -P MITgcm |
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|
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3) run MITgcm benchmarks |
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|
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./testreport -t 'adjustment.128x64x1 advect_cs advect_xy' |
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./testreport -t 'adjustment.cs-32x32x1 tutorial_held_suarez_cs tutorial_plume_on_slope' |
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|
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4) quick output plot for adjustment.128x64x1 |
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|
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cd ~/iap-idma |
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matlab -nodesktop |
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addpath gcmfaces |
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gcmfaces_global |
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|
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cd ~/iap-idma/MITgcm/verification/adjustment.128x64x1/run |
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mitgcm_plot_adju_128; |
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|
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note : to download mitgcm_plot_adju_128.m etc. go to |
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http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/comm/course-idma2015/computing/ |
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|
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5) repeat step #4 for different experiments: |
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|
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adjustment.128x64x1 mitgcm_plot_adju_128.m |
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advect_cs mitgcm_plot_adv_cs.m |
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advect_xy mitgcm_plot_adv_xy.m |
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* adjustment.cs-32x32x1 mitgcm_plot_adju_cs32.m |
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* tutorial_held_suarez_cs mitgcm_plot_held_suarez.m |
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* tutorial_plume_on_slope mitgcm_plot_plume.m |
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|
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note : |
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* in the cases of adjustment.cs-32x32x1, tutorial_held_suarez_cs, |
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and tutorial_plume_on_slope the matlab programs expect that |
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the experiment duration was increased (see iap-idma-exercises) |
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