| 1 |
|
| 2 |
---- common to all matlab sessions ---- |
| 3 |
|
| 4 |
0) login as guest |
| 5 |
|
| 6 |
1) open web browser, and download setup_gcmfaces_and_mitprof.csh |
| 7 |
from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/ |
| 8 |
|
| 9 |
note : |
| 10 |
for step 1, please be sure to use the download button |
| 11 |
of the browser rather than e.g. wget that can conflict |
| 12 |
with the behavior of the CVS web interface |
| 13 |
|
| 14 |
2) open terminal window, and proceed to download codes: |
| 15 |
csh |
| 16 |
mkdir iap-idma |
| 17 |
mv Downloads/setup_gcmfaces_and_mitprof.csh iap-idma/ |
| 18 |
cd iap-idma |
| 19 |
source ./setup_gcmfaces_and_mitprof.csh |
| 20 |
|
| 21 |
notes : |
| 22 |
disk space requirement ~ 800M (plus class specific items) |
| 23 |
matlab requirement > 2011 (for native netcdf implementation) |
| 24 |
|
| 25 |
---- for class #1 ---- |
| 26 |
|
| 27 |
1,2) see 'common to all classes' above |
| 28 |
|
| 29 |
3) download idma_float_plot.m from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/comm/course-idma2015/computing/ |
| 30 |
|
| 31 |
4) in terminal window |
| 32 |
mv ~/Downloads/idma_float_plot.m ~/iap-idma/. |
| 33 |
|
| 34 |
5) download Argo etc |
| 35 |
cd ~/iap-idma |
| 36 |
mkdir release1 |
| 37 |
wget --recursive ftp://mit.ecco-group.org/gforget/MITprof |
| 38 |
mv mit.ecco-group.org/gforget/MITprof release1/. |
| 39 |
|
| 40 |
6) start matlab and run idma_float_plot.m |
| 41 |
matlab |
| 42 |
[p]=idma_float_plot('2900828'); |
| 43 |
|
| 44 |
notes : |
| 45 |
disk space requirement ~ 6.4G (plus 0.8G from steps 1,2) |
| 46 |
start matlab at command line : matlab -nodesktop |
| 47 |
|
| 48 |
---- for class #2 ---- |
| 49 |
|
| 50 |
1,2) see 'common to all classes' above |
| 51 |
|
| 52 |
3) start matlab and run gcmfaces_demo |
| 53 |
cd ~/iap-idma |
| 54 |
matlab |
| 55 |
addpath gcmfaces |
| 56 |
gcmfaces_demo |
| 57 |
exit |
| 58 |
|
| 59 |
4) download ECCO climatology |
| 60 |
cd ~/iap-idma |
| 61 |
mkdir release1 |
| 62 |
|
| 63 |
wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/THETA |
| 64 |
wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/SALT |
| 65 |
wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/UVELMASS |
| 66 |
wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/VVELMASS |
| 67 |
wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'ADVx_*' |
| 68 |
wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'ADVy_*' |
| 69 |
wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'DFxE_*' |
| 70 |
wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'DFyE_*' |
| 71 |
mv mit.ecco-group.org/gforget/nctiles_climatology release1/. |
| 72 |
|
| 73 |
5) start matlab and run example_transports (or re-run gcmfaces_demo). |
| 74 |
cd ~/iap-idma |
| 75 |
matlab |
| 76 |
addpath gcmfaces |
| 77 |
gcmfaces_global |
| 78 |
diags=example_transports('v4'); |
| 79 |
example_transports_disp(diags); |
| 80 |
|
| 81 |
---- for class #4 ---- |
| 82 |
|
| 83 |
1) open web browser, and download setup_these_exps.csh |
| 84 |
from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/verification/ |
| 85 |
|
| 86 |
note : |
| 87 |
for step 1, please be sure to use the download button |
| 88 |
of the browser rather than e.g. wget that can conflict |
| 89 |
with the behavior of the CVS web interface |
| 90 |
|
| 91 |
2) open terminal window, install MITgcm: |
| 92 |
|
| 93 |
mkdir iap-idma |
| 94 |
cd iap-idma |
| 95 |
csh |
| 96 |
setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
| 97 |
cvs login |
| 98 |
( enter the CVS password: "cvsanon" ) |
| 99 |
cvs co -P MITgcm_verif_basic |
| 100 |
|
| 101 |
3) install the ECCO v4 setups |
| 102 |
|
| 103 |
cd ~/iap-idma/MITgcm/verification |
| 104 |
mv ~/Downloads/setup_these_exps.csh . |
| 105 |
source ./setup_these_exps.csh |
| 106 |
mv global_oce_tmp_download/global_oce_* . |
| 107 |
rm -rf global_oce_tmp_download |
| 108 |
|
| 109 |
4) run the ECCO v4 mini benchmark |
| 110 |
|
| 111 |
./testreport -t global_oce_cs32 |
| 112 |
|
| 113 |
5) quick output plot |
| 114 |
|
| 115 |
cd ~/iap-idma |
| 116 |
matlab -nodesktop |
| 117 |
addpath gcmfaces |
| 118 |
gcmfaces_global |
| 119 |
|
| 120 |
cd ~/iap-idma/MITgcm/verification/global_oce_cs32/run |
| 121 |
grid_load('./',6,'compact'); |
| 122 |
THETA=rdmds2gcmfaces('T.0000000008'); |
| 123 |
figureL; qwckplot(THETA(:,:,1)); colorbar; |
| 124 |
|
| 125 |
note : |
| 126 |
the matlab software needed for item #5 is assumed to have been |
| 127 |
installed according to 'common to all matlab sessions' |
| 128 |
|
| 129 |
---- for class #5 ---- |
| 130 |
|
| 131 |
1,2) same as class #4 |
| 132 |
|
| 133 |
3) run MITgcm benchmarks |
| 134 |
|
| 135 |
./testreport -t 'adjustment.128x64x1 advect_cs advect_xy' |
| 136 |
./testreport -t 'adjustment.cs-32x32x1 tutorial_held_suarez_cs tutorial_plume_on_slope' |
| 137 |
|
| 138 |
4) quick output plot for adjustment.128x64x1 |
| 139 |
|
| 140 |
cd ~/iap-idma |
| 141 |
matlab -nodesktop |
| 142 |
addpath gcmfaces |
| 143 |
gcmfaces_global |
| 144 |
|
| 145 |
cd ~/iap-idma/MITgcm/verification/adjustment.128x64x1/run |
| 146 |
mitgcm_plot_adju_128; |
| 147 |
|
| 148 |
5) repeat step #4 for different experiments: |
| 149 |
|
| 150 |
adjustment.128x64x1 mitgcm_plot_adju_128.m |
| 151 |
advect_cs mitgcm_plot_adv_cs.m |
| 152 |
advect_xy mitgcm_plot_adv_xy.m |
| 153 |
adjustment.cs-32x32x1 mitgcm_plot_adju_cs32.m |
| 154 |
tutorial_held_suarez_cs mitgcm_plot_held_suarez.m |
| 155 |
tutorial_plume_on_slope mitgcm_plot_plume.m |
| 156 |
|
| 157 |
note : |
| 158 |
in the cases of adjustment.cs-32x32x1, tutorial_held_suarez_cs, |
| 159 |
and tutorial_plume_on_slope the matlab programs expect that |
| 160 |
the experiment duration was increased (see iap-idma-exercises) |
Parent Directory
| 
Revision Log
| 
Revision Graph