/[MITgcm]/MITgcm_contrib/gael/comm/course-idma2015/computing/iap-idma-readme
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revision 1.2 by gforget, Wed Jan 14 19:32:18 2015 UTC revision 1.9 by gforget, Thu Jan 29 21:15:45 2015 UTC
# Line 1  Line 1 
1    
2  ---- common to all classes ----  ---- common to all matlab sessions ----
3    
4  0) login as guest  0) login as guest
5    
6  1) open web browser, and download setup_gcmfaces_and_mitprof.csh  1) open web browser, and download setup_gcmfaces_and_mitprof.csh
7     from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/     from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/
8    
9    note :
10       for step 1, please be sure to use the download button
11       of the browser rather than e.g. wget that can conflict
12       with the behavior of the CVS web interface
13    
14  2) open terminal window, and proceed to download codes:  2) open terminal window, and proceed to download codes:
15     csh     csh
16     mkdir iap-idma     mkdir iap-idma
# Line 26  notes : Line 31  notes :
31  4) in terminal window  4) in terminal window
32     mv ~/Downloads/idma_float_plot.m ~/iap-idma/.     mv ~/Downloads/idma_float_plot.m ~/iap-idma/.
33    
34  4) download Argo etc  5) download Argo etc
35       cd ~/iap-idma
36     mkdir release1     mkdir release1
37     wget --recursive ftp://mit.ecco-group.org/gforget/MITprof     wget --recursive ftp://mit.ecco-group.org/gforget/MITprof
38     mv mit.ecco-group.org/gforget/MITprof release1/.     mv mit.ecco-group.org/gforget/MITprof release1/.
39    
40  5) start matlab and run idma_float_plot.m  6) start matlab and run idma_float_plot.m
41     matlab     matlab
42     [p]=idma_float_plot('2900828');     [p]=idma_float_plot('2900828');
43    
# Line 41  notes : Line 47  notes :
47    
48  ---- for class #2 ----  ---- for class #2 ----
49    
50    1,2) see 'common to all classes' above
51    
52  3) start matlab and run gcmfaces_demo  3) start matlab and run gcmfaces_demo
53       cd ~/iap-idma
54     matlab     matlab
55     addpath gcmfaces     addpath gcmfaces
56     gcmfaces_demo     gcmfaces_demo
57       exit
58        
59  4) download ECCO climatology  4) download ECCO climatology
60       cd ~/iap-idma
61     mkdir release1     mkdir release1
    wget --recursive ftp://mit.ecco-group.org/gforget/MITprof  
    mv mit.ecco-group.org/gforget/MITprof release1/.  
62    
63     wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/THETA     wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/THETA
64     wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/SALT     wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/SALT
# Line 62  notes : Line 71  notes :
71     mv mit.ecco-group.org/gforget/nctiles_climatology release1/.     mv mit.ecco-group.org/gforget/nctiles_climatology release1/.
72    
73  5) start matlab and run example_transports (or re-run gcmfaces_demo).  5) start matlab and run example_transports (or re-run gcmfaces_demo).
74       cd ~/iap-idma
75       matlab
76     addpath gcmfaces     addpath gcmfaces
77     gcmfaces_global     gcmfaces_global
78     diags=example_transports('v4');     diags=example_transports('v4');
79     example_transports_disp(diags);     example_transports_disp(diags);
80    
81    ---- for class #4 ----
82    
83    1) open web browser, and download setup_these_exps.csh
84       from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/verification/
85    
86    note :
87       for step 1, please be sure to use the download button
88       of the browser rather than e.g. wget that can conflict
89       with the behavior of the CVS web interface
90    
91    2) open terminal window, install MITgcm:
92    
93       mkdir iap-idma
94       cd iap-idma
95       csh
96       setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
97       cvs login
98            ( enter the CVS password: "cvsanon" )
99       cvs co -P MITgcm_verif_basic
100    
101    3) install the ECCO v4 setups
102    
103       cd ~/iap-idma/MITgcm/verification
104       mv ~/Downloads/setup_these_exps.csh .
105       source ./setup_these_exps.csh
106       mv global_oce_tmp_download/global_oce_* .
107       rm -rf global_oce_tmp_download
108    
109    4) run the ECCO v4 mini benchmark
110    
111       ./testreport -t global_oce_cs32
112    
113    note :
114       building the MITgcm (whether using genmake2 or via testreport) requires that your machine
115       has : make or (preferably) GNU make, FORTRAN compiler, C compiler, [ba]sh and [t]csh shells
116    
117    5) quick output plot
118    
119       cd ~/iap-idma
120       matlab -nodesktop
121       addpath gcmfaces
122       gcmfaces_global
123    
124       cd ~/iap-idma/MITgcm/verification/global_oce_cs32/run
125       grid_load('./',6,'compact');
126       THETA=rdmds2gcmfaces('T.0000000008');
127       figureL; qwckplot(THETA(:,:,1)); colorbar;
128    
129    note :
130       the matlab software needed for item #5 is assumed to have been
131       installed according to 'common to all matlab sessions'
132    
133    ---- for class #5 ----
134    
135    1,2) same as class #4 except with
136       cvs co -P MITgcm
137         instead of
138       cvs co -P MITgcm_verif_basic
139    
140    3) run MITgcm benchmarks
141    
142       ./testreport -t 'adjustment.128x64x1 advect_cs advect_xy'
143       ./testreport -t 'adjustment.cs-32x32x1 tutorial_held_suarez_cs tutorial_plume_on_slope'
144    
145    note :
146       building the MITgcm (whether using genmake2 or via testreport) requires that your machine
147       has : make or (preferably) GNU make, FORTRAN compiler, C compiler, [ba]sh and [t]csh shells
148    
149    4) quick output plot for adjustment.128x64x1
150    
151       cd ~/iap-idma
152       matlab -nodesktop
153       addpath gcmfaces
154       gcmfaces_global
155    
156       cd ~/iap-idma/MITgcm/verification/adjustment.128x64x1/run
157       mitgcm_plot_adju_128;
158    
159       note : to download mitgcm_plot_adju_128.m etc. go to
160       http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/comm/course-idma2015/computing/
161    
162    5) repeat step #4 for different experiments:
163    
164       adjustment.128x64x1          mitgcm_plot_adju_128.m
165       advect_cs                    mitgcm_plot_adv_cs.m
166       advect_xy                    mitgcm_plot_adv_xy.m
167    *  adjustment.cs-32x32x1        mitgcm_plot_adju_cs32.m
168    *  tutorial_held_suarez_cs      mitgcm_plot_held_suarez.m
169    *  tutorial_plume_on_slope      mitgcm_plot_plume.m
170    
171    note :
172       * in the cases of adjustment.cs-32x32x1, tutorial_held_suarez_cs,
173       and tutorial_plume_on_slope the matlab programs expect that
174       the experiment duration was increased (see iap-idma-exercises)
175    
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