| 6 |
1) open web browser, and download setup_gcmfaces_and_mitprof.csh |
1) open web browser, and download setup_gcmfaces_and_mitprof.csh |
| 7 |
from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/ |
from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/ |
| 8 |
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|
| 9 |
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note : |
| 10 |
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for step 1, please be sure to use the download button |
| 11 |
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of the browser rather than e.g. wget that can conflict |
| 12 |
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with the behavior of the CVS web interface |
| 13 |
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|
| 14 |
2) open terminal window, and proceed to download codes: |
2) open terminal window, and proceed to download codes: |
| 15 |
csh |
csh |
| 16 |
mkdir iap-idma |
mkdir iap-idma |
| 78 |
diags=example_transports('v4'); |
diags=example_transports('v4'); |
| 79 |
example_transports_disp(diags); |
example_transports_disp(diags); |
| 80 |
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|
| 81 |
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---- for class #4 ---- |
| 82 |
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|
| 83 |
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1) open web browser, and download setup_these_exps.csh |
| 84 |
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from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/verification/ |
| 85 |
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|
| 86 |
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note : |
| 87 |
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for step 1, please be sure to use the download button |
| 88 |
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of the browser rather than e.g. wget that can conflict |
| 89 |
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with the behavior of the CVS web interface |
| 90 |
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|
| 91 |
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2) open terminal window, install MITgcm: |
| 92 |
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| 93 |
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mkdir iap-idma |
| 94 |
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cd iap-idma |
| 95 |
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csh |
| 96 |
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setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
| 97 |
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cvs login |
| 98 |
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( enter the CVS password: "cvsanon" ) |
| 99 |
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cvs co -P MITgcm_verif_basic |
| 100 |
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| 101 |
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3) install the ECCO v4 setups |
| 102 |
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| 103 |
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cd ~/iap-idma/MITgcm/verification |
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mv ~/Downloads/setup_these_exps.csh . |
| 105 |
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source ./setup_these_exps.csh |
| 106 |
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mv global_oce_tmp_download/global_oce_* . |
| 107 |
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rm -rf global_oce_tmp_download |
| 108 |
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| 109 |
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4) run the ECCO v4 mini benchmark |
| 110 |
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| 111 |
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./testreport -t global_oce_cs32 |
| 112 |
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| 113 |
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5) quick output plot |
| 114 |
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| 115 |
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cd ~/iap-idma |
| 116 |
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matlab -nodesktop |
| 117 |
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addpath gcmfaces |
| 118 |
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gcmfaces_global |
| 119 |
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| 120 |
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cd ~/iap-idma/MITgcm/verification/global_oce_cs32/run |
| 121 |
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grid_load('./',6,'compact'); |
| 122 |
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THETA=rdmds2gcmfaces('T.0000000008'); |
| 123 |
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figureL; qwckplot(THETA(:,:,1)); colorbar; |
| 124 |
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|
| 125 |
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note : |
| 126 |
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the matlab software needed for item #5 is assumed to have been |
| 127 |
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installed according to 'common to all matlab sessions' |
| 128 |
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|
| 129 |
|
---- for class #5 ---- |
| 130 |
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|
| 131 |
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1,2) same as class #4 except with |
| 132 |
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cvs co -P MITgcm |
| 133 |
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|
| 134 |
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3) run MITgcm benchmarks |
| 135 |
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|
| 136 |
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./testreport -t 'adjustment.128x64x1 advect_cs advect_xy' |
| 137 |
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./testreport -t 'adjustment.cs-32x32x1 tutorial_held_suarez_cs tutorial_plume_on_slope' |
| 138 |
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| 139 |
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4) quick output plot for adjustment.128x64x1 |
| 140 |
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| 141 |
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cd ~/iap-idma |
| 142 |
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matlab -nodesktop |
| 143 |
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addpath gcmfaces |
| 144 |
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gcmfaces_global |
| 145 |
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| 146 |
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cd ~/iap-idma/MITgcm/verification/adjustment.128x64x1/run |
| 147 |
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mitgcm_plot_adju_128; |
| 148 |
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|
| 149 |
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note : to download mitgcm_plot_adju_128.m etc. go to |
| 150 |
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http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/comm/course-idma2015/computing/ |
| 151 |
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|
| 152 |
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5) repeat step #4 for different experiments: |
| 153 |
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|
| 154 |
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adjustment.128x64x1 mitgcm_plot_adju_128.m |
| 155 |
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advect_cs mitgcm_plot_adv_cs.m |
| 156 |
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advect_xy mitgcm_plot_adv_xy.m |
| 157 |
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* adjustment.cs-32x32x1 mitgcm_plot_adju_cs32.m |
| 158 |
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* tutorial_held_suarez_cs mitgcm_plot_held_suarez.m |
| 159 |
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* tutorial_plume_on_slope mitgcm_plot_plume.m |
| 160 |
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|
| 161 |
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note : |
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* in the cases of adjustment.cs-32x32x1, tutorial_held_suarez_cs, |
| 163 |
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and tutorial_plume_on_slope the matlab programs expect that |
| 164 |
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the experiment duration was increased (see iap-idma-exercises) |
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