/[MITgcm]/MITgcm_contrib/gael/comm/course-idma2015/computing/iap-idma-readme

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-revision 1.1 by gforget,
Wed Jan 14 17:35:23 2015 UTC
+revision 1.6 by gforget,
Thu Jan 29 14:34:28 2015 UTC
 Line 1
+ ---- common to all matlab sessions ----
 ) login as guest
-) open web browser, go to:
+) open web browser, and download setup_gcmfaces_and_mitprof.csh
-      http://mitgcm.org/
+    from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/
-    follow links:
-      Source code
+ note :
-      CVS code browser
+    for step 1, please be sure to use the download button
-      Parent Directory
+    of the browser rather than e.g. wget that can conflict
-      MITgcm_contrib/
+    with the behavior of the CVS web interface
-      gael/
-      setup_gcmfaces_and_mitprof.csh
-      download
-) open terminal window, and proceed to download material:
+) open terminal window, and proceed to download codes:
+    csh
     mkdir iap-idma
     mv Downloads/setup_gcmfaces_and_mitprof.csh iap-idma/
     cd iap-idma
-    alias matlab /usr/local/matlab_2012a/bin/matlab
     source ./setup_gcmfaces_and_mitprof.csh
  notes :
-    disk space requirement ~ 800M + 13G from item #4
+    disk space requirement ~ 800M (plus class specific items)
     matlab requirement > 2011 (for native netcdf implementation)
+ ---- for class #1 ----
+,2) see 'common to all classes' above
+) download idma_float_plot.m from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/comm/course-idma2015/computing/
+) in terminal window
+    mv ~/Downloads/idma_float_plot.m ~/iap-idma/.
+) download Argo etc
+    cd ~/iap-idma
+    mkdir release1
+    wget --recursive ftp://mit.ecco-group.org/gforget/MITprof
+    mv mit.ecco-group.org/gforget/MITprof release1/.
+) start matlab and run idma_float_plot.m
+    matlab
+    [p]=idma_float_plot('2900828');
+ notes :
+    disk space requirement ~ 6.4G (plus 0.8G from steps 1,2)
+    start matlab at command line : matlab -nodesktop
+ ---- for class #2 ----
+,2) see 'common to all classes' above
 ) start matlab and run gcmfaces_demo
-    /usr/local/matlab_2012a/bin/matlab
+    cd ~/iap-idma
+    matlab
     addpath gcmfaces
     gcmfaces_demo
+    exit
-) download Argo and ECCO climatology
+) download ECCO climatology
+    cd ~/iap-idma
     mkdir release1
-    wget --recursive ftp://mit.ecco-group.org/gforget/MITprof
-    mv mit.ecco-group.org/gforget/MITprof release1/.
     wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/THETA
     wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/SALT
-Line 43 
 notes :
+Line 71 
 notes :
     mv mit.ecco-group.org/gforget/nctiles_climatology release1/.
 ) start matlab and run example_transports (or re-run gcmfaces_demo).
-    /usr/local/matlab_2012a/bin/matlab
+    cd ~/iap-idma
+    matlab
     addpath gcmfaces
     gcmfaces_global
     diags=example_transports('v4');
     example_transports_disp(diags);
+ ---- for class #4 ----
+) open web browser, and download setup_these_exps.csh
+    from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/verification/
+ note :
+    for step 1, please be sure to use the download button
+    of the browser rather than e.g. wget that can conflict
+    with the behavior of the CVS web interface
+) open terminal window, install MITgcm:
+    mkdir iap-idma
+    cd iap-idma
+    csh
+    setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack'
+    cvs login
+         ( enter the CVS password: "cvsanon" )
+    cvs co -P MITgcm_verif_basic
+) install the ECCO v4 setups
+    cd ~/iap-idma/MITgcm/verification
+    mv ~/Downloads/setup_these_exps.csh .
+    source ./setup_these_exps.csh
+    mv global_oce_tmp_download/global_oce_* .
+    rm -rf global_oce_tmp_download
+) run the ECCO v4 mini benchmark
+    ./testreport -t global_oce_cs32
+) quick output plot
+    cd ~/iap-idma
+    matlab -nodesktop
+    addpath gcmfaces
+    gcmfaces_global
+    cd ~/iap-idma/MITgcm/verification/global_oce_cs32/run
+    grid_load('./',6,'compact');
+    THETA=rdmds2gcmfaces('T.0000000008');
+    figureL; qwckplot(THETA(:,:,1)); colorbar;
+ note :
+    the matlab software needed for item #5 is assumed to have been
+    installed according to 'common to all matlab sessions'
+ ---- for class #5 ----
+,2) same as class #4
+) run MITgcm benchmarks
+    ./testreport -t 'adjustment.128x64x1 advect_cs advect_xy'
+    ./testreport -t 'adjustment.cs-32x32x1 tutorial_held_suarez_cs tutorial_plume_on_slope'
+) quick output plot for adjustment.128x64x1
+    cd ~/iap-idma
+    matlab -nodesktop
+    addpath gcmfaces
+    gcmfaces_global
+    cd ~/iap-idma/MITgcm/verification/adjustment.128x64x1/run
+    mitgcm_plot_adju_128;
+) repeat step #4 for different experiments:
+    adjustment.128x64x1          mitgcm_plot_adju_128.m
+    advect_cs                    mitgcm_plot_adv_cs.m
+    advect_xy                    mitgcm_plot_adv_xy.m
+    adjustment.cs-32x32x1        mitgcm_plot_adju_cs32.m
+    tutorial_held_suarez_cs      mitgcm_plot_held_suarez.m
+    tutorial_plume_on_slope      mitgcm_plot_plume.m
+ note :
+    in the cases of adjustment.cs-32x32x1, tutorial_held_suarez_cs,
+    and tutorial_plume_on_slope the matlab programs expect that
+    the experiment duration was increased (see iap-idma-exercises)

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