| 78 |
diags=example_transports('v4'); |
diags=example_transports('v4'); |
| 79 |
example_transports_disp(diags); |
example_transports_disp(diags); |
| 80 |
|
|
| 81 |
|
---- for class #4 ---- |
| 82 |
|
|
| 83 |
|
1) open web browser, and download setup_these_exps.csh |
| 84 |
|
from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/verification/ |
| 85 |
|
|
| 86 |
|
note : |
| 87 |
|
for step 1, please be sure to use the download button |
| 88 |
|
of the browser rather than e.g. wget that can conflict |
| 89 |
|
with the behavior of the CVS web interface |
| 90 |
|
|
| 91 |
|
2) open terminal window, install MITgcm: |
| 92 |
|
|
| 93 |
|
mkdir iap-idma |
| 94 |
|
cd iap-idma |
| 95 |
|
csh |
| 96 |
|
setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
| 97 |
|
cvs login |
| 98 |
|
( enter the CVS password: "cvsanon" ) |
| 99 |
|
cvs co -P MITgcm_verif_basic |
| 100 |
|
|
| 101 |
|
3) install the ECCO v4 setups |
| 102 |
|
|
| 103 |
|
cd ~/iap-idma/MITgcm/verification |
| 104 |
|
mv ~/Downloads/setup_these_exps.csh . |
| 105 |
|
source ./setup_these_exps.csh |
| 106 |
|
mv global_oce_tmp_download/global_oce_* . |
| 107 |
|
rm -rf global_oce_tmp_download |
| 108 |
|
|
| 109 |
|
4) run the ECCO v4 mini benchmark |
| 110 |
|
|
| 111 |
|
./testreport -t global_oce_cs32 |
| 112 |
|
|
| 113 |
|
note : |
| 114 |
|
building the MITgcm (whether using genmake2 or via testreport) requires that your machine |
| 115 |
|
has : make or (preferably) GNU make, FORTRAN compiler, C compiler, [ba]sh and [t]csh shells |
| 116 |
|
|
| 117 |
|
5) quick output plot |
| 118 |
|
|
| 119 |
|
cd ~/iap-idma |
| 120 |
|
matlab -nodesktop |
| 121 |
|
addpath gcmfaces |
| 122 |
|
gcmfaces_global |
| 123 |
|
|
| 124 |
|
cd ~/iap-idma/MITgcm/verification/global_oce_cs32/run |
| 125 |
|
grid_load('./',6,'compact'); |
| 126 |
|
THETA=rdmds2gcmfaces('T.0000000008'); |
| 127 |
|
figureL; qwckplot(THETA(:,:,1)); colorbar; |
| 128 |
|
|
| 129 |
|
note : |
| 130 |
|
the matlab software needed for item #5 is assumed to have been |
| 131 |
|
installed according to 'common to all matlab sessions' |
| 132 |
|
|
| 133 |
|
---- for class #5 ---- |
| 134 |
|
|
| 135 |
|
1,2) same as class #4 except with |
| 136 |
|
cvs co -P MITgcm |
| 137 |
|
instead of |
| 138 |
|
cvs co -P MITgcm_verif_basic |
| 139 |
|
|
| 140 |
|
3) run MITgcm benchmarks |
| 141 |
|
|
| 142 |
|
./testreport -t 'adjustment.128x64x1 advect_cs advect_xy' |
| 143 |
|
./testreport -t 'adjustment.cs-32x32x1 tutorial_held_suarez_cs tutorial_plume_on_slope' |
| 144 |
|
|
| 145 |
|
note : |
| 146 |
|
building the MITgcm (whether using genmake2 or via testreport) requires that your machine |
| 147 |
|
has : make or (preferably) GNU make, FORTRAN compiler, C compiler, [ba]sh and [t]csh shells |
| 148 |
|
|
| 149 |
|
4) quick output plot for adjustment.128x64x1 |
| 150 |
|
|
| 151 |
|
cd ~/iap-idma |
| 152 |
|
matlab -nodesktop |
| 153 |
|
addpath gcmfaces |
| 154 |
|
gcmfaces_global |
| 155 |
|
|
| 156 |
|
cd ~/iap-idma/MITgcm/verification/adjustment.128x64x1/run |
| 157 |
|
mitgcm_plot_adju_128; |
| 158 |
|
|
| 159 |
|
note : to download mitgcm_plot_adju_128.m etc. go to |
| 160 |
|
http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/comm/course-idma2015/computing/ |
| 161 |
|
|
| 162 |
|
5) repeat step #4 for different experiments: |
| 163 |
|
|
| 164 |
|
adjustment.128x64x1 mitgcm_plot_adju_128.m |
| 165 |
|
advect_cs mitgcm_plot_adv_cs.m |
| 166 |
|
advect_xy mitgcm_plot_adv_xy.m |
| 167 |
|
* adjustment.cs-32x32x1 mitgcm_plot_adju_cs32.m |
| 168 |
|
* tutorial_held_suarez_cs mitgcm_plot_held_suarez.m |
| 169 |
|
* tutorial_plume_on_slope mitgcm_plot_plume.m |
| 170 |
|
|
| 171 |
|
note : |
| 172 |
|
* in the cases of adjustment.cs-32x32x1, tutorial_held_suarez_cs, |
| 173 |
|
and tutorial_plume_on_slope the matlab programs expect that |
| 174 |
|
the experiment duration was increased (see iap-idma-exercises) |
| 175 |
|
|
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