| 1 |
gforget |
1.2 |
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| 2 |
gforget |
1.3 |
---- common to all matlab sessions ---- |
| 3 |
gforget |
1.2 |
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| 4 |
gforget |
1.1 |
0) login as guest |
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| 6 |
gforget |
1.2 |
1) open web browser, and download setup_gcmfaces_and_mitprof.csh |
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from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/ |
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gforget |
1.1 |
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gforget |
1.4 |
note : |
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for step 1, please be sure to use the download button |
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of the browser rather than e.g. wget that can conflict |
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with the behavior of the CVS web interface |
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| 14 |
gforget |
1.2 |
2) open terminal window, and proceed to download codes: |
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csh |
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gforget |
1.1 |
mkdir iap-idma |
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mv Downloads/setup_gcmfaces_and_mitprof.csh iap-idma/ |
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cd iap-idma |
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source ./setup_gcmfaces_and_mitprof.csh |
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notes : |
| 22 |
gforget |
1.2 |
disk space requirement ~ 800M (plus class specific items) |
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gforget |
1.1 |
matlab requirement > 2011 (for native netcdf implementation) |
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| 25 |
gforget |
1.2 |
---- for class #1 ---- |
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1,2) see 'common to all classes' above |
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3) download idma_float_plot.m from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/comm/course-idma2015/computing/ |
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4) in terminal window |
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mv ~/Downloads/idma_float_plot.m ~/iap-idma/. |
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| 34 |
gforget |
1.3 |
5) download Argo etc |
| 35 |
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cd ~/iap-idma |
| 36 |
gforget |
1.2 |
mkdir release1 |
| 37 |
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wget --recursive ftp://mit.ecco-group.org/gforget/MITprof |
| 38 |
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mv mit.ecco-group.org/gforget/MITprof release1/. |
| 39 |
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| 40 |
gforget |
1.3 |
6) start matlab and run idma_float_plot.m |
| 41 |
gforget |
1.2 |
matlab |
| 42 |
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[p]=idma_float_plot('2900828'); |
| 43 |
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| 44 |
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notes : |
| 45 |
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disk space requirement ~ 6.4G (plus 0.8G from steps 1,2) |
| 46 |
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start matlab at command line : matlab -nodesktop |
| 47 |
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| 48 |
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---- for class #2 ---- |
| 49 |
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| 50 |
gforget |
1.3 |
1,2) see 'common to all classes' above |
| 51 |
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| 52 |
gforget |
1.1 |
3) start matlab and run gcmfaces_demo |
| 53 |
gforget |
1.3 |
cd ~/iap-idma |
| 54 |
gforget |
1.2 |
matlab |
| 55 |
gforget |
1.1 |
addpath gcmfaces |
| 56 |
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gcmfaces_demo |
| 57 |
gforget |
1.3 |
exit |
| 58 |
gforget |
1.1 |
|
| 59 |
gforget |
1.2 |
4) download ECCO climatology |
| 60 |
gforget |
1.3 |
cd ~/iap-idma |
| 61 |
gforget |
1.1 |
mkdir release1 |
| 62 |
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| 63 |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/THETA |
| 64 |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/SALT |
| 65 |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/UVELMASS |
| 66 |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/VVELMASS |
| 67 |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'ADVx_*' |
| 68 |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'ADVy_*' |
| 69 |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'DFxE_*' |
| 70 |
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wget --recursive ftp://mit.ecco-group.org/gforget/nctiles_climatology/'DFyE_*' |
| 71 |
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mv mit.ecco-group.org/gforget/nctiles_climatology release1/. |
| 72 |
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| 73 |
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5) start matlab and run example_transports (or re-run gcmfaces_demo). |
| 74 |
gforget |
1.3 |
cd ~/iap-idma |
| 75 |
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matlab |
| 76 |
gforget |
1.1 |
addpath gcmfaces |
| 77 |
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gcmfaces_global |
| 78 |
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diags=example_transports('v4'); |
| 79 |
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example_transports_disp(diags); |
| 80 |
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| 81 |
gforget |
1.5 |
---- for class #4,5 ---- |
| 82 |
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| 83 |
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1) open web browser, and download setup_these_exps.csh |
| 84 |
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from http://mitgcm.org/viewvc/MITgcm/MITgcm_contrib/gael/verification/ |
| 85 |
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| 86 |
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note : |
| 87 |
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for step 1, please be sure to use the download button |
| 88 |
|
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of the browser rather than e.g. wget that can conflict |
| 89 |
|
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with the behavior of the CVS web interface |
| 90 |
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| 91 |
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2) open terminal windown, install MITgcm: |
| 92 |
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| 93 |
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mkdir iap-idma |
| 94 |
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cd iap-idma |
| 95 |
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csh |
| 96 |
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setenv CVSROOT ':pserver:cvsanon@mitgcm.org:/u/gcmpack' |
| 97 |
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cvs login |
| 98 |
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( enter the CVS password: "cvsanon" ) |
| 99 |
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cvs co -P MITgcm_verif_basic |
| 100 |
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| 101 |
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3) install the ECCO v4 setups |
| 102 |
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| 103 |
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cd ~/iap-idma/MITgcm/verification |
| 104 |
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mv ~/Downloads/setup_these_exps.csh . |
| 105 |
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source ./setup_these_exps.csh |
| 106 |
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mv global_oce_tmp_download/global_oce_* . |
| 107 |
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rm -rf global_oce_tmp_download |
| 108 |
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| 109 |
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4) run the ECCO v4 mini benchmark |
| 110 |
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| 111 |
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./testreport -t global_oce_cs32 |
| 112 |
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| 113 |
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5) quick output plot |
| 114 |
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| 115 |
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cd ~/iap-idma |
| 116 |
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matlab -nodesktop |
| 117 |
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addpath gcmfaces |
| 118 |
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gcmfaces_global |
| 119 |
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| 120 |
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cd ~/iap-idma/MITgcm/verification/global_oce_cs32/run |
| 121 |
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grid_load('./',6,'compact'); |
| 122 |
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THETA=rdmds2gcmfaces('T.0000000008'); |
| 123 |
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figureL; qwckplot(THETA(:,:,1)); colorbar; |
| 124 |
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| 125 |
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note : |
| 126 |
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the matlab software needed for item #5 is assumed to have been |
| 127 |
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installed according to 'common to all matlab sessions' |
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