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enderton |
1.1 |
#! /usr/bin/env bash |
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#PBS -N Eq5p2km_LW |
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#PBS -l ncpus=8 |
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#PBS -l walltime=08:00:00 |
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#PBS -q science@columbia2 |
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#PBS -V |
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# Columbia specific calls: |
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. /usr/share/modules/init/bash |
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#-----------------------------------------------------------------------------# |
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# - Load PC parameters # |
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# - Determine stop iteration for this period # |
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#-----------------------------------------------------------------------------# |
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runDir=/nobackup/enderton/Eq5p2km_LW |
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varlist="npcpl npocn exp matscript outDir figOutDir scrDir cplmonitor \ |
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ocnmonitor period iitO iitA fitO fitA nitC nitO nitA nitOonly \ |
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pChkptFreq taveFreq cpl_taveFreq dumpFreq monitorFreq plotFreq \ |
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exC exO exA exOOnly cplDir ocnDir atmDir dtA dtO dtC \ |
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LocalScratch MakePlots PeriodicCoupling ocnForcingRoot gWeight" |
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cd $runDir |
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source pc.vars |
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sitO=$(($iitO+$nitO)) |
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sitA=$(($iitA+$nitA)) |
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iitO0=`$scrDir/add0upto10c $iitO` |
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iitA0=`$scrDir/add0upto10c $iitA` |
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sitO0=`$scrDir/add0upto10c $sitO` |
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sitA0=`$scrDir/add0upto10c $sitA` |
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rm -f $cplmonitor |
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echo "Coupled period!" > $cplmonitor |
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echo "Actual start time, of script: "`date` >> $cplmonitor |
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echo "Simulation directory: "$runDir >> $cplmonitor |
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echo "Period: "$period >> $cplmonitor |
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echo "Period START iteration:" >> $cplmonitor |
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echo " Ocean "$iitO >> $cplmonitor |
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echo " Atmosphere "$iitA >> $cplmonitor |
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echo "Period STOP iteration:" >> $cplmonitor |
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echo " Ocean "$sitO >> $cplmonitor |
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echo " Atmosphere "$sitA >> $cplmonitor |
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echo "Overall FINAL iteration:" >> $cplmonitor |
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echo " Ocean "$fitO >> $cplmonitor |
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echo " Atmosphere "$fitA >> $cplmonitor |
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#-----------------------------------------------------------------------------# |
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# - Set coupled data file, and cpl_taveFreq in the ocean data.cpl file # |
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# - Set ocean and atmosphere data files # |
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#-----------------------------------------------------------------------------# |
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. $scrDir/setdatacpl $runDir/$cplDir $runDir/$ocnDir $nitC $cpl_taveFreq |
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. $scrDir/setdata $runDir/$ocnDir $iitO $nitO $pChkptFreq \ |
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$taveFreq $dumpFreq $monitorFreq |
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. $scrDir/setdata $runDir/$atmDir $iitA $nitA $pChkptFreq \ |
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$taveFreq $dumpFreq $monitorFreq |
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#-----------------------------------------------------------------------------# |
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# Move pickup files to ocean rank, copy atmospheric pickup files forward # |
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#-----------------------------------------------------------------------------# |
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oldper=$((period-1)) |
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rm $runDir/rank_*/pickup* |
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if [ $PeriodicCoupling -eq 0 ]; then |
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cp $outDir/Cpl$oldper/Ocn/pickup.$iitO0.* $ocnDir/. |
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for tile in `seq 6`; do |
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tile30=`$scrDir/add0upto3c $tile` |
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cp $outDir/Cpl$oldper/Atm/pickup*$iitA0.$tile30* \ |
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$runDir/rank_$((tile+1))/. |
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done |
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fi |
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if [ $PeriodicCoupling -eq 1 ]; then |
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cp $outDir/Ocn$oldper/pickup.$iitO0.* $ocnDir/. |
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oldA=`$scrDir/add0upto10c $(($iitA-(8*$nitOonly)))` |
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oldO=`$scrDir/add0upto10c $(($iitO-$nitOonly))` |
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for tile in `seq 6`; do |
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for suffix in meta data; do |
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tile30=`$scrDir/add0upto3c $tile` |
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cp $outDir/Cpl$oldper/Atm/pickup.$oldA.$tile30.001.$suffix \ |
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$runDir/rank_$((tile+1))/pickup.$iitA0.$tile30.001.$suffix |
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cp $outDir/Cpl$oldper/Atm/pickup_cpl.$oldA.$tile30.001.$suffix \ |
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$runDir/rank_$((tile+1))/pickup_cpl.$iitA0.$tile30.001.$suffix |
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cp $outDir/Cpl$oldper/Atm/pickup_ic.$oldA.$tile30.001.$suffix \ |
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$runDir/rank_$((tile+1))/pickup_ic.$iitA0.$tile30.001.$suffix |
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cp $outDir/Cpl$oldper/Atm/pickup_land.$oldA.$tile30.001.$suffix \ |
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$runDir/rank_$((tile+1))/pickup_land.$iitA0.$tile30.001.$suffix |
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cp $outDir/Cpl$oldper/Ocn/pickup_cpl.$oldO.$tile30.001.$suffix \ |
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$runDir/rank_1/pickup_cpl.$iitO0.$tile30.001.$suffix |
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done |
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done |
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fi |
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# Prepare run directories. |
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for rank in `seq 7`; do |
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if [ $rank -ge 3 ]; then |
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rm rank_$rank/data* rank_$rank/eedata rank_$rank/*.bin |
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cp rank_2/data* rank_$rank/. |
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cp rank_2/eedata rank_$rank/. |
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cp rank_2/*.bin rank_$rank/. |
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fi |
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done |
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echo "Beginning model execution..." >> $cplmonitor |
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mpirun -np 1 ./executables/mitgcmuv.c32.C1 \ |
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: 1 ./executables/mitgcmuv.c32.O1 \ |
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: 6 ./executables/mitgcmuv.c32.A6 |
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status=$? |
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echo "Ended with status: "$status >> $cplmonitor |
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#-----------------------------------------------------------------------------# |
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# Move old data (just copy pickups) # |
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#-----------------------------------------------------------------------------# |
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. $scrDir/moveDataCpl $runDir $outDir $period $iitO0 \ |
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$sitO0 $iitA0 $sitA0 $cplmonitor |
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rm rank_*/pickup* |
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#-----------------------------------------------------------------------------# |
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# Check for pickups # |
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#-----------------------------------------------------------------------------# |
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pickO=$outDir/Cpl$period/Ocn/pickup.$sitO0.001.001.data |
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pickA=$outDir/Cpl$period/Atm/pickup.$sitA0.001.001.data |
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if [ -f $pickO ]; then echo "Ocn pickup present: "$pickO >> $cplmonitor |
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else echo "No Ocn pickup: "$pickO >> $cplmonitor; exit; fi |
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if [ -f $pickA ]; then echo "Atm pickup present: "$pickA >> $cplmonitor |
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else echo "No Atm pickup: "$pickA >> $cplmonitor; exit; fi |
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#-----------------------------------------------------------------------------# |
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# Reset periodic coupling parameters # |
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#-----------------------------------------------------------------------------# |
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source pc.vars |
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iitO=$sitO |
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iitA=$sitA |
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if [ $PeriodicCoupling -eq 0 ]; then period=$(($period+1)); fi |
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rm -f pc.vars |
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for i in $varlist; do echo $i'='`eval echo '$'$i` >> pc.vars.temp; done |
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mv pc.vars.temp pc.vars |
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#-----------------------------------------------------------------------------# |
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# Resubmit coupled model # |
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#-----------------------------------------------------------------------------# |
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if [ $iitO -ge $fitO ]; then |
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echo "New iitO exceeds fitO; All done!" >> $cplmonitor; exit; fi |
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if [ $iitA -ge $fitA ]; then |
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echo "New iitA exceeds fitA; All done!" >> $cplmonitor; exit; fi |
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if [ $PeriodicCoupling -eq 0 ]; then qsub runCpl; fi |
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if [ $PeriodicCoupling -eq 1 ]; then qsub runOcn; fi |
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