enderton/Diagnostics/DiagLoadMonitor.m

function [data,time] = ...
    DiagLoadMonitor(fln,mnchandle,dad,itr,tst,SecPerYear,DiagDebug);

% Read in files names.
%files = dir([dad,'/',mnchandle]);
filesin=ls([dad,'/',mnchandle]);
index=1;
while ~isempty(filesin)
    [token,filesin] = strtok(filesin);
    if ~isempty(filesin)
        files(index).name=token; index=index+1;
    end
end


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%                             Read in data                                %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Initialize result arrays.
if isempty(itr),
    time=[];
    data=[];
else
    time=NaN.*zeros(size(itr));
    data=NaN.*zeros(size(itr));
end

for ifile = 1:length(files)
    
    % Open monitor file.
    if DiagDebug, disp(['Entering file:  ',files(ifile).name]); end
    nc=netcdf(files(ifile).name,'read');
    
    % Read time and data information.
    nciter=nc{'T'}; if isempty(nciter), nciter=nc{'iter'}.*tst; end
    ncdata=nc{fln};
    if isempty(nciter), error('Monitor time axis not found!'); end
    if isempty(ncdata), error(['Monitor field not found:  ',fln]); end
    
    % Load desired indecies.
    if isempty(itr)
        if isempty(time),
            time=nciter(:);
            data=ncdata(:);
        else
            index=find(~ismember(nciter(:),time));
                if ~isempty(index)
                    nciter=nciter(index); time=[time;NaN;nciter];
                    ncdata=ncdata(index); data=[data;NaN;ncdata];
            end
        end
    else
        [test,loc]=ismember(itr,nciter(:));
        index=find(test);
        if ~isempty(index)
            time(index)=nciter(loc(index));
            data(index)=ncdata(loc(index));
        end
    end
    
    close(nc);
end

% Check for missing indecies.
% if ~isempty(find(isnan(time))) || ~isempty(find(isnan(data)))
%     error('Missing monitor data for specified indecies!');
% end

time=time./SecPerYear;
1	enderton	1.1	function [data,time] = ...
2			DiagLoadMonitor(fln,mnchandle,dad,itr,tst,SecPerYear,DiagDebug);
3
4			% Read in files names.
5			%files = dir([dad,'/',mnchandle]);
6			filesin=ls([dad,'/',mnchandle]);
7			index=1;
8			while ~isempty(filesin)
9			[token,filesin] = strtok(filesin);
10			if ~isempty(filesin)
11			files(index).name=token; index=index+1;
12			end
13			end
14
15
16			%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
17			% Read in data %
18			%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
19
20			% Initialize result arrays.
21			if isempty(itr),
22			time=[];
23			data=[];
24			else
25			time=NaN.*zeros(size(itr));
26			data=NaN.*zeros(size(itr));
27			end
28
29			for ifile = 1:length(files)
30
31			% Open monitor file.
32			if DiagDebug, disp(['Entering file: ',files(ifile).name]); end
33			nc=netcdf(files(ifile).name,'read');
34
35			% Read time and data information.
36	enderton	1.3	nciter=nc{'T'}; if isempty(nciter), nciter=nc{'iter'}.*tst; end
37	enderton	1.1	ncdata=nc{fln};
38			if isempty(nciter), error('Monitor time axis not found!'); end
39			if isempty(ncdata), error(['Monitor field not found: ',fln]); end
40
41			% Load desired indecies.
42			if isempty(itr)
43			if isempty(time),
44			time=nciter(:);
45			data=ncdata(:);
46			else
47			index=find(~ismember(nciter(:),time));
48	enderton	1.3	if ~isempty(index)
49			nciter=nciter(index); time=[time;NaN;nciter];
50			ncdata=ncdata(index); data=[data;NaN;ncdata];
51	enderton	1.2	end
52	enderton	1.1	end
53			else
54			[test,loc]=ismember(itr,nciter(:));
55			index=find(test);
56			if ~isempty(index)
57			time(index)=nciter(loc(index));
58			data(index)=ncdata(loc(index));
59			end
60			end
61
62			close(nc);
63			end
64
65			% Check for missing indecies.
66	enderton	1.3	% if ~isempty(find(isnan(time))) \|\| ~isempty(find(isnan(data)))
67			% error('Missing monitor data for specified indecies!');
68			% end
69	enderton	1.1
70	enderton	1.3	time=time./SecPerYear;