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LAT-LON-Polar-Cap setup | 
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ed@eh3.com, cnh@mit.edu, heimbach@mit.edu | 
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 | 
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Setup code/, input/ | 
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Note that the *.mitgrid files must be named using the following pattern | 
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or they will not be read correctly by MITgcm: | 
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 | 
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  cd run | 
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  for i in 1 2 3 4 5 6; do  | 
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    ln -s ../input/llc_p90_${i}.mitgrid tile00${i}.mitgrid | 
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  done | 
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 | 
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Change topology: | 
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  | 
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cd MITgcm/utils/exch2/matlab-topology-generator/ | 
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  | 
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modify matlab script driver_llc.m | 
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line | 
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nr = 360; ng = 90; nb = 90; tnx=90;tny=90; | 
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to (e.g.) | 
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nr = 360; ng = 90; nb = 90; tnx=30;tny=30; | 
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run script | 
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  | 
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This generates routine and header | 
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w2_e2setup.F | 
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W2_EXCH2_TOPOLOGY.h | 
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which need to go in code/ | 
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 | 
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Accordingly, bathy.0??.0??.data need changing. | 
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 | 
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N.B. Domain decomposition nPy not active with exch2, i.e. | 
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possible decomps are (for orig. with 17 tiles): | 
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sNx = 90 30 90  30 | 
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sNy = 90 30 90  30 | 
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nSx = 17 17  1   1 | 
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nSy =  1  1  1   1 | 
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nPx =  1  9 17 153 | 
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nPy =  1  1  1   1 | 
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 | 
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I've generated artificial tile #18 with all zeros | 
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blanklist.txt needs to be generated by hand. | 
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Not clear how many procs to invoke in presence of blank list. | 
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 | 
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Setup code_15lev/, input_15lev/ | 
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------------------------------- | 
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 | 
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* Real bathymetry, 15 vertical levels, | 
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* monthly climatological forcing via exf package, uses | 
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  4x4 deg. fields with on-the-fly interpolation | 
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* Bathymetry is generated via script ... in ... | 
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* Initial conditions for T, S are generated via script ... in ... | 
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 | 
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All input fields can be downloaded using script input_15lev/prepare_run | 
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(which also contains link pattern to standard tile00${i}.mitgrid fields), | 
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then link to run directory. | 
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 | 
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Setup code_50lev/, input_50lev/ | 
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------------------------------- | 
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 | 
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* Based on ETOPO2 bathy,  | 
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* 50 vertical level exactly matching high_res_cube (ECCO2), incl. partial cell params. | 
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* forced by 6-hourly NCEP atmos. state, uses original reduced Gaussian grid | 
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  and exf interpolation on-the-fly | 
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* initial conditions generated via scripts in  | 
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  MITgcm_contrib/eh3/llc/ecco-godae/climatology/ | 
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  resulting fields are | 
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  llc90x90x360_50lev_ptemp.bin, llc90x90x360_50lev_salt.bin | 
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  these fields are run are run with a diffusion/conv.adj. setup of MITgcm | 
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  for 10 days to remove some instabilities | 
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* input fields can be obtained at | 
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  http://channel.mit.edu/datasets/MITgcm_input_files/MITgcm_contrib/eh3/llc/ecco-godae/data_50lev/ |