ecco_darwin/v4_llc270_JAMES_paper/readme_darwin.txt

==============
# Build executable for ECCO-Darwin version 4
cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code
cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/
cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin
cd MITgcm/pkg
ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .
cd ..
mkdir build
cd build
module purge
module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
../tools/genmake2 -of \
  ../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/code/linux_amd64_ifort+mpi_ice_nas -mo \
  '../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/code'
make depend
make -j 16

==============
# Instructions for running ECCO-Darwin Version 4 for 1992-2018 period
cd ..
mkdir run
cd run
ln -sf ../build/mitgcmuv .
ln -sf /nobackupp2/dmenemen/public/llc_270/iter42/input/* .
ln -sf /nobackupp2/dmenemen/public/llc_270/ecco_darwin_v4/input/* .
ln -sf /nobackup/hzhang1/forcing/era_xx .
cp ../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/input/* .
cp ../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/input_darwin/* .
# modify job_llc270_fdH as needed
qsub job_llc270_fdH

==============
# Creating input directory for ECCO-Darwin version 4
mkdir /nobackupp2/dmenemen/public/llc_270/ecco_darwin_v4/input
cd /nobackupp2/dmenemen/public/llc_270/ecco_darwin_v4/input
cp /nobackup/dcarrol2/temp/pickup_ptracers_optimized.0000000001.data pickup_ptracers.0000000001.data
cp /nobackup/dcarrol2/temp/pickup_ptracers.0000210384.meta pickup_ptracers.0000000001.meta 
cp /nobackup/dcarrol2/forcing/apCO2/* .
cp /nobackup/dcarrol2/temp/llc270_Mahowald_2009_soluble_iron_dust.bin .
1	dcarroll	1.1	==============
2			# Build executable for ECCO-Darwin version 4
3			cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code
4	dcarroll	1.2	cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/
5	dcarroll	1.1	cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin
6			cd MITgcm/pkg
7			ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .
8			cd ..
9			mkdir build
10			cd build
11			module purge
12			module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt
13			../tools/genmake2 -of \
14	dcarroll	1.2	../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/code/linux_amd64_ifort+mpi_ice_nas -mo \
15			'../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/code'
16	dcarroll	1.1	make depend
17			make -j 16
18
19			==============
20			# Instructions for running ECCO-Darwin Version 4 for 1992-2018 period
21			cd ..
22			mkdir run
23			cd run
24			ln -sf ../build/mitgcmuv .
25			ln -sf /nobackupp2/dmenemen/public/llc_270/iter42/input/* .
26			ln -sf /nobackupp2/dmenemen/public/llc_270/ecco_darwin_v4/input/* .
27			ln -sf /nobackup/hzhang1/forcing/era_xx .
28	dcarroll	1.2	cp ../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/input/* .
29			cp ../../MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper/input_darwin/* .
30	dcarroll	1.1	# modify job_llc270_fdH as needed
31			qsub job_llc270_fdH
32
33			==============
34			# Creating input directory for ECCO-Darwin version 4
35			mkdir /nobackupp2/dmenemen/public/llc_270/ecco_darwin_v4/input
36			cd /nobackupp2/dmenemen/public/llc_270/ecco_darwin_v4/input
37			cp /nobackup/dcarrol2/temp/pickup_ptracers_optimized.0000000001.data pickup_ptracers.0000000001.data
38			cp /nobackup/dcarrol2/temp/pickup_ptracers.0000210384.meta pickup_ptracers.0000000001.meta
39			cp /nobackup/dcarrol2/forcing/apCO2/* .
40			cp /nobackup/dcarrol2/temp/llc270_Mahowald_2009_soluble_iron_dust.bin .