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dimitri |
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# Verification experiment, initially based on |
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# MITgcm/verification/tutorial_global_oce_biogeo |
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# ======== |
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# 1. Get code |
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cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code |
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dimitri |
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cvs co MITgcm_contrib/ecco_darwin/v4_3deg/data |
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cvs co MITgcm_contrib/ecco_darwin/v4_llc270_JAMES_paper |
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dimitri |
1.1 |
cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin |
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cd MITgcm/pkg |
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ln -sf ../../MITgcm_contrib/darwin/pkg/darwin . |
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cd .. |
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mkdir build run |
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# ================ |
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# 2. Build executable |
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# Prerequisite: 1. Get code |
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cd build |
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../tools/genmake2 -ieee -mo \ |
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'../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code' |
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make depend |
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make -j 8 |
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# ====================== |
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# 3. Run verification setup |
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# Prerequisite: 2. Build executable |
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cd ../run |
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ln -sf ../build/mitgcmuv . |
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cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* . |
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cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* . |
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cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/input/*data* . |
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ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* . |
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./mitgcmuv > output.txt |
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# Compare to verification output |
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diff output.txt ../../MITgcm_contrib/ecco_darwin/v4_3deg/results/output.txt |
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# ============================ |
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# 4. Build and run MPI executable |
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# Prerequisite: 1. Get code |
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cd build |
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rm * |
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cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/code/SIZE.h_mpi SIZE.h |
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../tools/genmake2 -mpi -mo \ |
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'../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code' |
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make depend |
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make -j 8 |
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cd ../run |
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mkdir diags |
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ln -sf ../build/mitgcmuv . |
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cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* . |
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cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* . |
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cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/input/*data* . |
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mv data_mpi data |
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ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* . |
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mpirun -np 8 ./mitgcmuv & |
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# Monitor run |
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tail -f STDOUT.0000 | grep advcfl_W |
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# ============================ |
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# 5. MATLAB code for computing volume, salt, salinity, and DIC budgets |
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# Prerequisite: 4. Build and run MPI executable |
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# Can be executed as soon as 3 or more months of output are available |
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cd ../../MITgcm_contrib/ecco_darwin/v4_3deg/matlab |
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# start matlab |
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# if using gcmfaces: budget_v4_3deg_with_gcmfaces |
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# if not using gcmfaces: budget_v4_3deg_without_gcmfaces |
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