/[MITgcm]/MITgcm_contrib/ecco_darwin/v4_3deg/readme.txt
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revision 1.9 by dimitri, Mon Jan 27 06:31:49 2020 UTC revision 1.15 by dimitri, Fri Feb 28 14:30:51 2020 UTC
# Line 2  Line 2 
2  # MITgcm/verification/tutorial_global_oce_biogeo  # MITgcm/verification/tutorial_global_oce_biogeo
3    
4  # ========  # ========
5  # Get code  # 1. Get code
6   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code
  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_3deg  
  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270  
  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin  
7   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm/verification/tutorial_global_oce_biogeo   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm/verification/tutorial_global_oce_biogeo
8     cvs co MITgcm_contrib/ecco_darwin/v4_3deg
9     cvs co MITgcm_contrib/ecco_darwin/v4_llc270
10     cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin
11   cd MITgcm/pkg   cd MITgcm/pkg
12   ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .   ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .
13   cd ..   cd ..
14     mkdir build run
15    
16  # ================  # ================
17  # Build executable  # 2. Build executable
18   mkdir build  #    Prerequisite: 1. Get code
19   cd build   cd build
20   ../tools/genmake2 -mo '../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code'   ../tools/genmake2 -ieee -mo \
21      '../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code'
22   make depend   make depend
23   make -j 8   make -j 8
  cd ..  
24    
25  # ======================  # ======================
26  # Run verification setup  # 3. Run verification setup
27   mkdir run  #    Prerequisite: 2. Build executable
28   cd run   cd ../run
29   ln -sf ../build/mitgcmuv .   ln -sf ../build/mitgcmuv .
30   cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* .   cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* .
31   cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* .   cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* .
# Line 32  Line 33 
33   ln -sf ../verification/tutorial_global_oce_biogeo/input/bathy.bin .   ln -sf ../verification/tutorial_global_oce_biogeo/input/bathy.bin .
34   ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* .   ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* .
35   ./mitgcmuv > output.txt   ./mitgcmuv > output.txt
   
 # ==============================  
36  # Compare to verification output  # Compare to verification output
37   diff output.txt ../../MITgcm_contrib/ecco_darwin/v4_3deg/results/output.txt   diff output.txt ../../MITgcm_contrib/ecco_darwin/v4_3deg/results/output.txt
38    
39    # ============================
40    # 4. Build and run MPI executable
41    #    Prerequisite: 1. Get code
42     cd build
43     rm *
44     cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/code/SIZE.h_mpi SIZE.h
45     ../tools/genmake2 -mpi -mo \
46      '../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code'
47     make depend
48     make -j 8
49     cd ../run
50     mkdir diags
51     ln -sf ../build/mitgcmuv .
52     cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* .
53     cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* .
54     cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/input/*data* .
55     mv data_mpi data
56     ln -sf ../verification/tutorial_global_oce_biogeo/input/bathy.bin .
57     ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* .
58     mpirun -np 8 ./mitgcmuv &
59    # Monitor run
60     tail -f STDOUT.0000 | grep advcfl_W
61    
62    # ============================
63    # 5. MATLAB code for computing volume, salt, salinity, and DIC budgets
64    #    Prerequisite: 4. Build and run MPI executable
65    #    Can be executed as soon as 3 or more months of output are available
66     cd ../../MITgcm_contrib/ecco_darwin/v4_3deg/matlab
67    # start matlab
68    # if using gcmfaces: budget_v4_3deg_with_gcmfaces
69    # if not using gcmfaces: budget_v4_3deg_without_gcmfaces
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