/[MITgcm]/MITgcm_contrib/ecco_darwin/v4_3deg/readme.txt

Diff of /MITgcm_contrib/ecco_darwin/v4_3deg/readme.txt

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-revision 1.8 by dimitri,
Mon Jan 27 02:52:02 2020 UTC
+revision 1.16 by dimitri,
Fri Feb 28 21:24:00 2020 UTC
 Line 2
  # MITgcm/verification/tutorial_global_oce_biogeo
  # ========
- # Get code
+ # 1. Get code
   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code
-  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_3deg
+  cvs co MITgcm_contrib/ecco_darwin/v4_3deg
+  cvs co MITgcm_contrib/ecco_darwin/v4_llc270
   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin
-  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm/verification/tutorial_global_oce_biogeo
   cd MITgcm/pkg
   ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .
   cd ..
+  mkdir build run
  # ================
- # Build executable
+ # 2. Build executable
-  mkdir build
+ #    Prerequisite: 1. Get code
   cd build
-  ../tools/genmake2 -mo ../../MITgcm_contrib/ecco_darwin/v4_3deg/code
+  ../tools/genmake2 -ieee -mo \
+   '../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code'
   make depend
   make -j 8
-  cd ..
  # ======================
- # Run verification setup
+ # 3. Run verification setup
-  mkdir run
+ #    Prerequisite: 2. Build executable
-  cd run
+  cd ../run
   ln -sf ../build/mitgcmuv .
+  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* .
+  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* .
   cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/input/*data* .
-  ln -sf ../verification/tutorial_global_oce_biogeo/input/*bin .
+  ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* .
-  rm lev_* shi_* tren_t*
-  ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/runof* .
-  ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/*_2000 .
-  ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/*.0005184000 .
-  ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/ptracers* .
-  ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/3deg* .
   ./mitgcmuv > output.txt
- # ==============================
  # Compare to verification output
   diff output.txt ../../MITgcm_contrib/ecco_darwin/v4_3deg/results/output.txt
+ # ============================
+ # 4. Build and run MPI executable
+ #    Prerequisite: 1. Get code
+  cd build
+  rm *
+  cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/code/SIZE.h_mpi SIZE.h
+  ../tools/genmake2 -mpi -mo \
+   '../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code'
+  make depend
+  make -j 8
+  cd ../run
+  mkdir diags
+  ln -sf ../build/mitgcmuv .
+  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* .
+  cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* .
+  cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/input/*data* .
+  mv data_mpi data
+  ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* .
+  mpirun -np 8 ./mitgcmuv &
+ # Monitor run
+  tail -f STDOUT.0000 | grep advcfl_W
+ # ============================
+ # 5. MATLAB code for computing volume, salt, salinity, and DIC budgets
+ #    Prerequisite: 4. Build and run MPI executable
+ #    Can be executed as soon as 3 or more months of output are available
+  cd ../../MITgcm_contrib/ecco_darwin/v4_3deg/matlab
+ # start matlab
+ # if using gcmfaces: budget_v4_3deg_with_gcmfaces
+ # if not using gcmfaces: budget_v4_3deg_without_gcmfaces

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