/[MITgcm]/MITgcm_contrib/ecco_darwin/v4_3deg/readme.txt
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revision 1.10 by dimitri, Mon Jan 27 06:57:34 2020 UTC revision 1.19 by dimitri, Sat Mar 7 02:26:24 2020 UTC
# Line 2  Line 2 
2  # MITgcm/verification/tutorial_global_oce_biogeo  # MITgcm/verification/tutorial_global_oce_biogeo
3    
4  # ========  # ========
5  # Get code  # 1. Get code
6   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm_code
7   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_3deg   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_3deg
8   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v4_llc270
9   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin   cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "03/22/18" MITgcm_contrib/darwin/pkg/darwin
  cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "11/28/17" MITgcm/verification/tutorial_global_oce_biogeo  
10   cd MITgcm/pkg   cd MITgcm/pkg
11   ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .   ln -sf ../../MITgcm_contrib/darwin/pkg/darwin .
12   cd ..   cd ..
13     mkdir build run
14    
15  # ================  # ================
16  # Build executable  # 2. Build executable
17   mkdir build  #    Prerequisite: 1. Get code
18   cd build   cd build
19   ../tools/genmake2 -ieee -mo \   ../tools/genmake2 -ieee -mo \
20    '../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code'    '../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code'
21   make depend   make depend
22   make -j 8   make -j 8
  cd ..  
23    
24  # ======================  # ======================
25  # Run verification setup  # 3. Run verification setup
26   mkdir run  #    Prerequisite: 2. Build executable
27   cd run   cd ../run
28   ln -sf ../build/mitgcmuv .   ln -sf ../build/mitgcmuv .
29   cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* .   cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* .
30   cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* .   cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* .
31   cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/input/*data* .   cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/input/*data* .
  ln -sf ../verification/tutorial_global_oce_biogeo/input/bathy.bin .  
32   ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* .   ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* .
33     mkdir diags
34   ./mitgcmuv > output.txt   ./mitgcmuv > output.txt
   
 # ==============================  
35  # Compare to verification output  # Compare to verification output
36   diff output.txt ../../MITgcm_contrib/ecco_darwin/v4_3deg/results/output.txt   diff <(grep %MON output.txt) <(grep %MON ../../MITgcm_contrib/ecco_darwin/v4_3deg/results/output.txt)
37    
38    # ============================
39    # 4. Build and run MPI executable
40    #    Prerequisite: 1. Get code
41     cd build
42     rm *
43     cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/code/SIZE.h_mpi SIZE.h
44     ../tools/genmake2 -mpi -mo \
45      '../../MITgcm_contrib/ecco_darwin/v4_3deg/code ../../MITgcm_contrib/ecco_darwin/v4_llc270/code_darwin ../../MITgcm_contrib/ecco_darwin/v4_llc270/code'
46     make depend
47     make -j 8
48     cd ../run
49     mkdir diags
50     ln -sf ../build/mitgcmuv .
51     cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input/data* .
52     cp ../../MITgcm_contrib/ecco_darwin/v4_llc270/input_darwin/data* .
53     cp ../../MITgcm_contrib/ecco_darwin/v4_3deg/input/*data* .
54     mv data_mpi data
55     ln -sf ../../MITgcm_contrib/ecco_darwin/v4_3deg/data/* .
56     mpirun -np 8 ./mitgcmuv &
57    # Monitor run
58     tail -f STDOUT.0000 | grep advcfl_W
59    
60    # ============================
61    # 5. MATLAB code for computing volume, salt, salinity, and DIC budgets
62    #    Prerequisite: 4. Build and run MPI executable
63    #    Can be executed as soon as 3 or more months of output are available
64     cd ../../MITgcm_contrib/ecco_darwin/v4_3deg/matlab
65    # start matlab
66    # if using gcmfaces: budget_v4_3deg_with_gcmfaces
67    # if not using gcmfaces: budget_v4_3deg_without_gcmfaces
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