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# Build executable for ECCO-Darwin version 2 (ag4) |
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# corresponding to optimized solution in Brix et al. (2015) |
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# This reproduces executable with circa-2011 MITgcm code from |
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# /nobackup/hbrix/MITgcm_110502/build_darwin_ag4/mitgcmuv |
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|
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cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "2011-05-12 10:30:47" MITgcm_code |
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cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co -D "2011-05-12 10:30:47" MITgcm_contrib/darwin/pkg/darwin |
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cvs -d :pserver:cvsanon:cvsanon@mitgcm.org:/u/gcmpack co MITgcm_contrib/ecco_darwin/v2_cs510_Brix |
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cd MITgcm/pkg |
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ln -sf ../../MITgcm_contrib/darwin/pkg/darwin . |
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cd .. |
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mkdir build |
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cd build |
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module purge |
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module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt |
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../tools/genmake2 -of \ |
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../../MITgcm_contrib/ecco_darwin/v2_cs510_Brix/code/linux_amd64_ifort+mpi_ice_nas \ |
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-mo ../../MITgcm_contrib/ecco_darwin/v2_cs510_Brix/code |
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make depend |
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make -j 16 |
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|
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============== |
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# Instructions for running Version 2 (ag4) to 2009-2010. |
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# lou:~hbrix/ECCO2/darwin_ag4 |
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# |
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# darwin_ag4: |
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# Starting beginning of 2009 from a weighted combination of the ptracers |
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# and dic pickup files from darwin runs 'a4v' 'a5v' 'a6v' 'a7v' 'a9v' |
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# with fact1 = 0.16033; fact2 = 0.56404; fact3 = -0.077899; fact4 = 0.10418; |
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# fact5 = 0.24935; Base run is a5v. Factors are from Green's |
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# function analysis of these four runs for 2009/10 using LDEO surface |
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# pCO2, Takahashi pCO2 climatology (variability, not absolute values and |
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# the global mean CO2 flux for 2010. pickup and pickup_seaice file are |
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# from 2009 adjoint integration. |
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# |
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# runs={'a4v' 'a5v' 'a6v' 'a7v' 'a9v'}; gfrun='ag4'; |
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# fact1 = 0.16033; |
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# fact2 = 0.56404; |
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# fact3 = -0.077899; |
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# fact4 = 0.10418; |
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# fact5 = 0.24935; |
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# piston velocity factor in dic_surfforcing.F from 0.337 to 0.34822 |
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# R_PICPOC in darwin_generate_phyto.F from 0.04 to 0.133. |
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# optimization based on: |
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# 'a4v' 'a6v' 'a7v' 'a9v' 'a10v' 'a13v' |
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# Globflux_err = 0.01 |
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# a5v -0.57061 |
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# a4v 0.16033 +/- 0.010098 |
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# a6v -0.077899 +/- 0.035022 |
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# a7v 0.10418 +/- 0.0089553 |
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# a9v 0.24935 +/- 0.0076539 |
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# a10v -0.41537 +/- 0.047835 |
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# -> piston factor = 0.34822 |
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# a13v 1.55 +/- 0.064771 |
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# -> R_PICPOC = 0.133 |
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# global-mean flux: -2.5471 |
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|
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cd .. |
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mkdir run |
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cd run |
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ln -sf ../build/mitgcmuv . |
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cp ../../MITgcm_contrib/ecco_darwin/v2_cs510_Brix/input/* . |
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ln -sf ~dmenemen/CMS/run_template_cg1/darwin* . |
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ln -sf ~dmenemen/CMS/run_template_cg1/DIFFKR_2_20_1_lat6070_cube81 . |
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ln -sf /nobackup/hzhang1/cs510/run_template/GEBCO_510x6x510_ver06_dig.bin . |
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ln -sf /nobackup/hzhang1/forcing/jra25/jra25_dlw* . |
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ln -sf /nobackup/hzhang1/cs510/ICBC_2009_iter26/jra25_xx_* . |
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ln -sf /nobackup/hbrix/ICBC/pco2a_blended_* . |
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ln -sf pco2a_blended_2012 pco2a_blended_2013 |
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ln -sf pco2a_blended_2012 pco2a_blended_2014 |
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ln -sf /nobackup/hzhang1/cs510/ICBC_2009_iter26/pickup.0000000001.data_xx pickup.0000000001.data |
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ln -sf /nobackup/hzhang1/cs510/ICBC_2009/pickup*.0000000001.??ta . |
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ln -sf /nobackup/dmenemen/forcing/runoff/runoff-360x180x12.bin . |
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ln -sf /nobackup/hzhang1/cs510/run_template/tile00* . |
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|
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# modify run_darwin_450 as needed |
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qsub run_darwin_450 |
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|
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############################################################## |
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# From ftp://ecco.jpl.nasa.gov/ECCO2/Darwin/CarbFlux_v2 |
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# Global Attributes: |
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# description = 'ECCO2-Darwin CS510 run ag4 monthly average' |
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# MITgcmUV_version = 'checkpoint62w' |
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# IntegrationPeriod = '2009-01-01 -- 2010-12-31' |
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# InitialConditionsPhysics= 'ECCO2-CS510 ver. 2 (adjoint), Jan09-Apr10, |
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# iter. 22.' |
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# InitialConditionsBGC = 'Linear combination of the initial conditions of |
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# five sensitivity experiments for all |
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# biogeochemical tracers (Greens functions run ag4)' |
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# SurfaceForcingPhysics = 'ECCO2-CS510 ver. 2 (adjoint), Jan09-Apr10, |
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# iter. 22. JRA-25 after Apr10.' |
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# SurfaceForcingBGC = 'Time and space variable atmospheric pCO2 blended |
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# from daily 2009 GEOS-Chem results provided by K. |
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# Bowman (JPL) on 3/3/2011 and global atmospheric |
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# monthly means from NOAA ESRL. Iron/dust |
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# climatological values from Mahowald (2006).' |
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# ModelParametersPhysics = 'ECCO2-CS510 ver. 2 (adjoint), Jan09-Apr10, |
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# iter. 22.' |
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# ModelParametersBGC = '5 phytoplankton species, set-up from Stephanie |
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# Dutkiewicz (MIT); PIC phytoplankton production |
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# relative to organic carbon (R_PICPOC) = 0.133.' |
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# author = 'Holger Brix -- UCLA/JPL' |
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# date = '10-Feb-2012' |
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# contact = 'hbrix@ucla.edu' |
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|
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# From pfe:/home5/hbrix/README_runs |
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# darwin_ag4: |
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# Starting beginning of 2009 from a weighted comination of the ptracers |
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# and dic pickup files from darwin runs 'a4v' 'a5v' 'a6v' 'a7v' 'a9v' |
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# with fact1 = 0.16033; fact2 = 0.56404; fact3 = -0.077899; fact4 = 0.10418; |
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# fact5 = 0.24935; Base run is a5v. Factors are from Green's |
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# function analysis of these four runs for 2009/10 using LDEO surface |
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# pCO2, Takahashi pCO2 climatology (variability, not absolute values and |
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# the global mean CO2 flux for 2010. pickup and pickup_seaice file are |
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# from 2009 adjoint integration. |
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|
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# From pfe:/home5/hbrix/README_gf |
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# runs={'a4v' 'a5v' 'a6v' 'a7v' 'a9v'}; gfrun='ag4'; |
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# fact1 = 0.16033; |
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# fact2 = 0.56404; |
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# fact3 = -0.077899; |
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# fact4 = 0.10418; |
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# fact5 = 0.24935; |
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# piston velocity factor in dic_surfforcing.F from 0.337 to 0.34822 |
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# R_PICPOC in darwin_generate_phyto.F from 0.04 to 0.133. |
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# optimization based on: |
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# 'a4v' 'a6v' 'a7v' 'a9v' 'a10v' 'a13v' |
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# Globflux_err = 0.01 |
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# a5v -0.57061 |
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# a4v 0.16033 +/- 0.010098 |
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# a6v -0.077899 +/- 0.035022 |
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# a7v 0.10418 +/- 0.0089553 |
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# a9v 0.24935 +/- 0.0076539 |
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# a10v -0.41537 +/- 0.047835 |
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# -> piston factor = 0.34822 |
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# a13v 1.55 +/- 0.064771 |
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# -> R_PICPOC = 0.133 |
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# global-mean flux: -2.5471 |
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