| 1 |
function [ub,vb]=calcBolusVelCube(d,g,GMform); |
function [ub,vb,wb]=calcBolusVelCube(d,g,GMform); |
| 2 |
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| 3 |
% [ub,vb] = calcBolusVelCube(d,g,GMform); |
% [ub,vb] = calcBolusVelCube(d,g,GMform); |
| 4 |
% |
% |
| 44 |
ra = reshape(g.rA(1:6*nc,1:nc) ,[6*nc*nc,1]); |
ra = reshape(g.rA(1:6*nc,1:nc) ,[6*nc*nc,1]); |
| 45 |
rAs = reshape(g.rAs(1:6*nc,1:nc) ,[6*nc*nc,1]); |
rAs = reshape(g.rAs(1:6*nc,1:nc) ,[6*nc*nc,1]); |
| 46 |
rAw = reshape(g.rAw(1:6*nc,1:nc) ,[6*nc*nc,1]); |
rAw = reshape(g.rAw(1:6*nc,1:nc) ,[6*nc*nc,1]); |
| 47 |
%dxc = reshape(g.dxC(1:6*nc,1:nc),[6*nc*nc,1]); |
dxc = reshape(g.dxC(1:6*nc,1:nc),[6*nc*nc,1]); |
| 48 |
%dyc = reshape(g.dyC(1:6*nc,1:nc),[6*nc*nc,1]); |
dyc = reshape(g.dyC(1:6*nc,1:nc),[6*nc*nc,1]); |
| 49 |
%dxg = reshape(g.dxG(1:6*nc,1:nc),[6*nc*nc,1]); |
dxg = reshape(g.dxG(1:6*nc,1:nc),[6*nc*nc,1]); |
| 50 |
%dyg = reshape(g.dyG(1:6*nc,1:nc),[6*nc*nc,1]); |
dyg = reshape(g.dyG(1:6*nc,1:nc),[6*nc*nc,1]); |
| 51 |
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| 52 |
%rAw=dxc.*dyg; |
%rAw=dxc.*dyg; |
| 53 |
%rAs=dyc.*dxg; |
%rAs=dyc.*dxg; |
| 56 |
mw=ceil(hw); mw=min(1,mw); |
mw=ceil(hw); mw=min(1,mw); |
| 57 |
ms=ceil(hs); ms=min(1,ms); |
ms=ceil(hs); ms=min(1,ms); |
| 58 |
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| 59 |
%hw(find(hw==0))=Inf; |
hw(find(hw==0))=Inf; |
| 60 |
%hs(find(hs==0))=Inf; |
hs(find(hs==0))=Inf; |
| 61 |
%hw_recip=1./hw; %hw_recip(find(hw==0))=0; |
hw_recip=1./hw; %hw_recip(find(hw==0))=0; |
| 62 |
%hs_recip=1./hs; %hs_recip(find(hs==0))=0; |
hs_recip=1./hs; %hs_recip(find(hs==0))=0; |
| 63 |
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| 64 |
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ub_all = zeros(6*nc,nc,nr,nt); |
| 65 |
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vb_all = zeros(6*nc,nc,nr,nt); |
| 66 |
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wb_all = zeros(6*nc,nc,nr,nt); |
| 67 |
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| 68 |
switch GMform |
switch GMform |
| 69 |
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| 121 |
ub = reshape(ub./(rAw*dr),[6*nc,nc,nr]); |
ub = reshape(ub./(rAw*dr),[6*nc,nc,nr]); |
| 122 |
% vb = reshape(hs_recip.*vb./(rAs*dr),[6*nc,nc,nr]); |
% vb = reshape(hs_recip.*vb./(rAs*dr),[6*nc,nc,nr]); |
| 123 |
vb = reshape(vb./(rAs*dr),[6*nc,nc,nr]); |
vb = reshape(vb./(rAs*dr),[6*nc,nc,nr]); |
| 124 |
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| 125 |
ub_all(:,:,:,it) = ub; |
ub_all(:,:,:,it) = ub; |
| 126 |
vb_all(:,:,:,it) = vb; |
vb_all(:,:,:,it) = vb; |
| 127 |
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| 128 |
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%%%%%%%%%%%%% |
| 129 |
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[u6t,v6t] =split_UV_cub(ub,vb,0,1); |
| 130 |
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[hw6t,hs6t]=split_UV_cub(reshape(hw,6*nc,nc,nr),reshape(hs,6*nc,nc,nr),0,1); |
| 131 |
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[dy6t,dx6t]=split_UV_cub(reshape(dyg,6*nc,nc),reshape(dxg,6*nc,nc),0,1); |
| 132 |
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| 133 |
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%F6tX = u6t.*hw6t.*permute(repmat(dy6t,[1 1 1 nr]),[1 2 4 3]); |
| 134 |
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%F6tY = v6t.*hs6t.*permute(repmat(dx6t,[1 1 1 nr]),[1 2 4 3]); |
| 135 |
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F6tX = u6t.*permute(repmat(dy6t,[1 1 1 nr]),[1 2 4 3]); |
| 136 |
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F6tY = v6t.*permute(repmat(dx6t,[1 1 1 nr]),[1 2 4 3]); |
| 137 |
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| 138 |
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Hdiv = zeros(nc,nc,nr,6); |
| 139 |
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Hdiv = F6tX([2:nc+1],:,:,:) - F6tX([1:nc],:,:,:) ... |
| 140 |
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+ F6tY(:,[2:nc+1],:,:) - F6tY(:,[1:nc],:,:); |
| 141 |
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for k=1:nr |
| 142 |
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Hdiv(:,:,k,:) = -Hdiv(:,:,k,:)*dr(k); |
| 143 |
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end |
| 144 |
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| 145 |
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%psiX = zeros(6*nc,nc,nr); |
| 146 |
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%for n = 1:6 |
| 147 |
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% is = 1+nc*(n-1);ie=nc*n; |
| 148 |
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% psiX([is:ie],[1:nc],[1:nr]) = Hdiv([1:nc],[1:nc],[1:nr],n); |
| 149 |
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%end |
| 150 |
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psiX = reshape(permute(Hdiv,[1 4 2 3]),6*nc,nc,nr); |
| 151 |
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%wb = psiX ./ repmat(reshape(ra,6*nc,nc),[1 1 nr]); |
| 152 |
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| 153 |
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wb = zeros(6*nc,nc,nr+1); |
| 154 |
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for k=nr:-1:1 |
| 155 |
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wb(:,:,k)= psiX(:,:,k) ./ reshape(ra,6*nc,nc) + wb(:,:,k+1); |
| 156 |
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end |
| 157 |
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| 158 |
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wb_all(:,:,:,it) = wb(:,:,1:30); |
| 159 |
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%%%%%%%%%%%% |
| 160 |
end |
end |
| 161 |
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| 162 |
%%%%%%% Advective form case |
%%%%%%% Advective form case |
| 197 |
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| 198 |
ub = ub_all; |
ub = ub_all; |
| 199 |
vb = vb_all; |
vb = vb_all; |
| 200 |
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wb = wb_all; |