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#! /usr/bin/env bash |
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|
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#PBS -N FastC24AB3 |
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#PBS -q four-twelve |
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#PBS -l nodes=8 |
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#PBS -V |
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|
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# ITRDA specific calls: |
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. /etc/profile.d/modules.sh |
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module add mpich/intel |
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module add python-ext |
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|
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#-----------------------------------------------------------------------------# |
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# - Load PC parameters # |
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# - Determine stop iteration for this period # |
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#-----------------------------------------------------------------------------# |
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runDir=/net/ds-06/scratch-0/dfer/MITgcm_cpl/verification/cpl_aim+ocn_fast/input_C24_AB3 |
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varlist="npcpl npocn exp matscript outDir figOutDir scrDir cplmonitor \ |
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ocnmonitor period iitO iitA fitO fitA nitC nitO nitA nitOonly \ |
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pChkptFreq taveFreq cpl_taveFreq dumpFreq monitorFreq plotFreq \ |
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exC exO exA exOOnly cplDir ocnDir atmDir dtA dtO dtC \ |
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LocalScratch MakePlots PeriodicCoupling ocnForcingRoot gWeight" |
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cd $runDir |
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source pc.vars |
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sitO=$(($iitO+$nitO)) |
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sitA=$(($iitA+$nitA)) |
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iitO0=`$scrDir/add0upto10c $iitO` |
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iitA0=`$scrDir/add0upto10c $iitA` |
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sitO0=`$scrDir/add0upto10c $sitO` |
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sitA0=`$scrDir/add0upto10c $sitA` |
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rm -f $cplmonitor |
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echo "Coupled period!" > $cplmonitor |
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echo "Actual start time, of script: "`date` >> $cplmonitor |
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echo "Simulation directory: "$runDir >> $cplmonitor |
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echo "Period: "$period >> $cplmonitor |
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echo "Period START iteration:" >> $cplmonitor |
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echo " Ocean "$iitO >> $cplmonitor |
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echo " Atmosphere "$iitA >> $cplmonitor |
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echo "Period STOP iteration:" >> $cplmonitor |
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echo " Ocean "$sitO >> $cplmonitor |
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echo " Atmosphere "$sitA >> $cplmonitor |
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echo "Overall FINAL iteration:" >> $cplmonitor |
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echo " Ocean "$fitO >> $cplmonitor |
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echo " Atmosphere "$fitA >> $cplmonitor |
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|
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#-----------------------------------------------------------------------------# |
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# - Set coupled data file, and cpl_taveFreq in the ocean data.cpl file # |
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# - Set ocean and atmosphere data files # |
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#-----------------------------------------------------------------------------# |
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. $scrDir/setdatacpl $runDir/$cplDir $runDir/$ocnDir $nitC $cpl_taveFreq |
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. $scrDir/setdata $runDir/$ocnDir $iitO $nitO $pChkptFreq \ |
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$taveFreq $dumpFreq $monitorFreq |
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. $scrDir/setdata $runDir/$atmDir $iitA $nitA $pChkptFreq \ |
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$taveFreq $dumpFreq $monitorFreq |
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|
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#-----------------------------------------------------------------------------# |
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# Move pickup files to ocean rank, copy atmospheric pickup files forward # |
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#-----------------------------------------------------------------------------# |
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NpO=1 |
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NpA=6 |
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listO=`seq $NpO` |
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listA=`seq $(($NpO+1)) $(($NpA+$NpO))` |
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#NpO=0 |
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#for xx in $listO; do |
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# NpO=`expr $NpO + 1` |
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#done |
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|
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listP=`cat $PBS_NODEFILE` |
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rm -f pr_group ; touch pr_group |
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np=0 ; nc=0 ; exe=$exC ; |
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for xx in $listP; do |
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echo $xx $np $runDir/executables/$exe >> pr_group |
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if [ $nc -lt $NpO ]; then |
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exe=$exO |
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else |
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exe=$exA |
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fi |
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nc=`expr $nc + 1` |
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np=1 |
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done |
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#nodelist=`cat $PBS_NODEFILE` |
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#rm -f pr_group; touch pr_group |
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#nc=0; type=C1 |
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#for ii in $nodelist; do |
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# echo $ii $nc $runDir/executables/mitgcmuv.$type >> pr_group |
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# if test $nc = 0 ; then type=O1 ; else type=A6 ; fi |
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# nc=1 |
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#done |
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echo "Program goup file:" >> $cplmonitor |
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cat pr_group >> $cplmonitor |
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echo "Beginning model execution..." >> $cplmonitor |
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|
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|
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oldper=$((period-1)) |
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rm $runDir/rank_*/pickup* |
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if [ $PeriodicCoupling -eq 0 ]; then |
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cp $outDir/Cpl$oldper/Ocn/pickup.$iitO0.* $ocnDir/. |
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for tile in `seq $NpA`; do |
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tile30=`$scrDir/add0upto3c $tile` |
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cp $outDir/Cpl$oldper/Atm/pickup*$iitA0.$tile30* \ |
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$runDir/rank_$((tile+$NpO))/. |
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done |
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fi |
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|
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# Prepare run directories. |
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for rank in `seq 7`; do |
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if [ $rank -ge 3 ]; then |
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# rm rank_$rank/data* rank_$rank/eedata rank_$rank/*.bin |
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rm rank_$rank/data* rank_$rank/eedata |
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cp rank_2/data* rank_$rank/. |
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cp rank_2/eedata rank_$rank/. |
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# cp rank_2/*.bin rank_$rank/. |
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fi |
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done |
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echo "Beginning model execution..." >> $cplmonitor |
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mpirun -p4pg pr_group -v ./executables/$exC |
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status=$? |
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echo "Ended with status: "$status >> $cplmonitor |
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|
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#-----------------------------------------------------------------------------# |
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# Check for pickups # |
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#-----------------------------------------------------------------------------# |
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pickO=rank_1/pickup.$sitO0.001.001.data |
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pickA=$atmDir/pickup.$sitA0.001.001.data |
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if [ -f $pickO ]; then echo "Ocn pickup present: "$pickO >> $cplmonitor |
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else echo "No Ocn pickup: "$pickO >> $cplmonitor; exit; fi |
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if [ -f $pickA ]; then echo "Atm pickup present: "$pickA >> $cplmonitor |
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else echo "No Atm pickup: "$pickA >> $cplmonitor; exit; fi |
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|
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#-----------------------------------------------------------------------------# |
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# Move old data (just copy pickups) # |
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#-----------------------------------------------------------------------------# |
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. $scrDir/movedataCpl2 $npcpl $runDir $ocnDir $atmDir $outDir \ |
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$period $sitO0 $sitA0 $cplmonitor $NpO $NpA |
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|
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rm rank_*/pickup* |
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|
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#-----------------------------------------------------------------------------# |
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# Reset periodic coupling parameters # |
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#-----------------------------------------------------------------------------# |
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source pc.vars |
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iitO=$sitO |
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iitA=$sitA |
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if [ $PeriodicCoupling -eq 0 ]; then period=$(($period+1)); fi |
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rm -f pc.vars |
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for i in $varlist; do echo $i'='`eval echo '$'$i` >> pc.vars.temp; done |
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mv pc.vars.temp pc.vars |
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|
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#-----------------------------------------------------------------------------# |
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# Resubmit coupled model # |
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#-----------------------------------------------------------------------------# |
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if [ $iitO -ge $fitO ]; then |
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echo "New iitO exceeds fitO; All done!" >> $cplmonitor; exit; fi |
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if [ $iitA -ge $fitA ]; then |
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echo "New iitA exceeds fitA; All done!" >> $cplmonitor; exit; fi |
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if [ $PeriodicCoupling -eq 0 ]; then qsub runCpl; fi |
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if [ $PeriodicCoupling -eq 1 ]; then qsub runOcn; fi |
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