| 1 |
#!/bin/bash |
| 2 |
|
| 3 |
echo -n "What format is the data in? (netcdf/binary): " |
| 4 |
read nb |
| 5 |
|
| 6 |
if [ $nb = 'binary' ]; then |
| 7 |
|
| 8 |
echo -n "Would you like to use default settings? (y/n): " |
| 9 |
read yn |
| 10 |
|
| 11 |
if [ $yn = 'n' ]; then |
| 12 |
|
| 13 |
rm -f .darwinview/binfilenames |
| 14 |
rm -f .darwinview/*.datbin |
| 15 |
|
| 16 |
echo -n "Please enter screen resolution: " |
| 17 |
read win |
| 18 |
echo $win > .darwinview/binconfig |
| 19 |
echo -n "Please enter dimensions of data: " |
| 20 |
read dim |
| 21 |
echo $dim >> .darwinview/binconfig |
| 22 |
echo -n "Please enter dimensions of data sets: " |
| 23 |
read dimset |
| 24 |
echo $dimset >> .darwinview/binconfig |
| 25 |
echo .darwinview/binfilenames >> .darwinview/binconfig |
| 26 |
echo -n "Please enter directory containing data: " |
| 27 |
read dir |
| 28 |
|
| 29 |
echo -n "Please enter name of file containing desired species: " |
| 30 |
read fn |
| 31 |
|
| 32 |
vn=( `cat $fn` ) |
| 33 |
|
| 34 |
for name in ${vn[@]}; do |
| 35 |
touch .darwinview/$name.datbin |
| 36 |
echo .darwinview/$name.datbin >> .darwinview/binfilenames |
| 37 |
for i in `ls $dir`; do |
| 38 |
echo $dir/$i/`ls $dir/$i | grep $name` >> .darwinview/$name.datbin |
| 39 |
done |
| 40 |
done |
| 41 |
|
| 42 |
fi |
| 43 |
|
| 44 |
elif [ $nb = 'netcdf' ]; then |
| 45 |
|
| 46 |
echo -n "Would you like to use default settings? (y/n): " |
| 47 |
read yn |
| 48 |
|
| 49 |
if [ $yn = 'n' ]; then |
| 50 |
|
| 51 |
rm -f .darwinview/ncfilenames |
| 52 |
rm -f .darwinview/*.datnc |
| 53 |
|
| 54 |
echo -n "Please enter screen resolution: " |
| 55 |
read win |
| 56 |
echo $win > .darwinview/ncconfig |
| 57 |
echo -n "Please enter dimensions of data: " |
| 58 |
read dim |
| 59 |
echo $dim >> .darwinview/ncconfig |
| 60 |
echo -n "Please enter dimensions of data sets: " |
| 61 |
read dimset |
| 62 |
echo $dimset >> .darwinview/ncconfig |
| 63 |
echo .darwinview/ncfilenames >> .darwinview/ncconfig |
| 64 |
|
| 65 |
echo -n "Please enter directory containing data: " |
| 66 |
read tmp |
| 67 |
echo $tmp > .darwinview/netcdf |
| 68 |
echo -n "Please enter directory to write to: " |
| 69 |
read tmp |
| 70 |
echo $tmp >> .darwinview/netcdf |
| 71 |
|
| 72 |
echo -n "Please enter name of file containing desired species: " |
| 73 |
read tmp |
| 74 |
echo $tmp >> .darwinview/netcdf |
| 75 |
echo -n "Please enter name of file containing desired tiles: " |
| 76 |
read tmp |
| 77 |
echo $tmp >> .darwinview/netcdf |
| 78 |
echo -n "Please enter name of file containing desired time steps: " |
| 79 |
read tmp |
| 80 |
echo $tmp >> .darwinview/netcdf |
| 81 |
|
| 82 |
fi |
| 83 |
|
| 84 |
indir=( `cat .darwinview/netcdf | head -1` ) |
| 85 |
outdir=( `cat .darwinview/netcdf | head -2 | tail -1` ) |
| 86 |
fn=( `cat .darwinview/netcdf | head -3 | tail -1` ) |
| 87 |
vn=( `cat $fn` ) |
| 88 |
fn=( `cat .darwinview/netcdf | head -4 | tail -1` ) |
| 89 |
tlist=( `cat $fn` ) |
| 90 |
fn=( `cat .darwinview/netcdf | tail -1` ) |
| 91 |
itlist=( `cat $fn` ) |
| 92 |
|
| 93 |
initdir=`pwd` |
| 94 |
gcc ~/netcdf.c -I/usr/include/netcdf-3 -L/usr/lib/netcdf-3 -lnetcdf |
| 95 |
for tstep in ${itlist[@]}; do |
| 96 |
cd $initdir |
| 97 |
cd $outdir |
| 98 |
mkdir -p $tstep |
| 99 |
cd $tstep |
| 100 |
for name in ${vn[@]}; do |
| 101 |
for tile in ${tlist[@]}; do |
| 102 |
/home/marissa/a.out ~/${indir}/ptr_tave.${tstep}.${tile}.nc $name |
| 103 |
done |
| 104 |
done |
| 105 |
done |
| 106 |
|
| 107 |
cd $initdir |
| 108 |
|
| 109 |
for name in ${vn[@]}; do |
| 110 |
touch .darwinview/$name.datnc |
| 111 |
echo .darwinview/$name.datnc >> .darwinview/ncfilenames |
| 112 |
for i in `ls $outdir`; do |
| 113 |
echo $outdir/$i/`ls $outdir/$i | grep $name` >> .darwinview/$name.datnc |
| 114 |
done |
| 115 |
done |
| 116 |
|
| 117 |
fi |
| 118 |
|
| 119 |
gcc darwin.c -lglut |
| 120 |
./a.out $nb |
Parent Directory
| 
Revision Log
| 
Revision Graph