darwinview/src/darwin.bash

#!/bin/bash

mkdir -p .darwinview

echo -n "What format is the data in? (binary/netcdf): "
read nb

if [ $nb = 'binary' ]; then

  echo -n "Would you like to use default settings? (y/n): "
  read yn
  
  if [ $yn = 'n' ]; then

    rm -f .darwinview/binfilenames
    rm -f .darwinview/*.datbin

    xrandr | grep '*' | awk -F' ' '{print $1}' > .darwinview/binconfig
    echo -n "Please enter dimensions of data: "
    read dim
    echo $dim >> .darwinview/binconfig
    echo -n "Please enter dimensions of data sets: "
    read dimset
    echo $dimset >> .darwinview/binconfig
    echo .darwinview/binfilenames >> .darwinview/binconfig

    echo -n "Please enter directory containing data: "
    read dir
  
    echo -n "Please enter name of file containing desired species: "
    read fn 
 
    vn=( `cat $fn` ) 

    for name in ${vn[@]}; do
      touch .darwinview/$name.datbin
      echo .darwinview/$name.datbin >> .darwinview/binfilenames 
      for i in `ls $dir`; do
        echo $dir/$i/`ls $dir/$i | grep $name` >> .darwinview/$name.datbin
      done
    done

  elif [ `echo $yn | grep -v y` ]; then 
    echo "Error: please enter 'y' or 'n.'"
    exit
  fi

elif [ $nb = 'netcdf' ]; then

  echo -n "Would you like to use default settings? (y/n): "
  read yn
 
  if [ $yn = 'n' ]; then

    rm -f .darwinview/ncfilenames
    rm -f .darwinview/*.datnc

    xrandr | grep '*' | awk -F' ' '{print $1}' > .darwinview/ncconfig
    echo -n "Please enter dimensions of data: "
    read dim
    echo $dim >> .darwinview/ncconfig
    echo -n "Please enter dimensions of data sets: "
    read dimset
    echo $dimset >> .darwinview/ncconfig
    echo .darwinview/ncfilenames >> .darwinview/ncconfig

    echo -n "Please enter directory containing data: "
    read tmp 
    echo $tmp > .darwinview/netcdf


    echo -n "Please enter directory to write to: "
    read tmp 
    echo $tmp >> .darwinview/netcdf

    echo -n "Please enter name of file containing desired species: "
    read tmp 
    echo $tmp >> .darwinview/netcdf

    echo -n "Please enter name of file containing desired tiles: "
    read tmp 
    echo $tmp >> .darwinview/netcdf

    echo -n "Please enter name of file containing desired time steps: "
    read tmp
    echo $tmp >> .darwinview/netcdf

  elif [ `echo $yn | grep -v y` ]; then
    echo "Error: please enter 'y' or 'n.'"
    exit 
  fi

  indir=( `cat .darwinview/netcdf | head -1` )
  outdir=( `cat .darwinview/netcdf | head -2 | tail -1` )
  fn=( `cat .darwinview/netcdf | head -3 | tail -1` )
  vn=( `cat $fn` )
  fn=( `cat .darwinview/netcdf | head -4 | tail -1` )
  tlist=( `cat $fn` )
  fn=( `cat .darwinview/netcdf | tail -1` )
  itlist=( `cat $fn` )

  initdir=`pwd`
  gcc netcdf.c -I/usr/include/netcdf-3 -L/usr/lib/netcdf-3 -lnetcdf
  for tstep in ${itlist[@]}; do 
    cd $initdir
    cd $outdir
    mkdir -p $tstep
    cd $tstep
    for name in ${vn[@]}; do
      for tile in ${tlist[@]}; do
        $initdir/a.out ~/${indir}/ptr_tave.${tstep}.${tile}.nc $name
      done
    done
  done

  cd $initdir

  for name in ${vn[@]}; do
    echo $name
    touch .darwinview/$name.datnc
    echo .darwinview/$name.datnc >> .darwinview/ncfilenames 
    for i in `ls $outdir`; do
      echo $outdir/$i/`ls $outdir/$i | grep $name` >> .darwinview/$name.datnc
    done
  done

else
 echo "Error: please enter 'binary' or 'netcdf.'"
 exit
fi

if [ ! `ls | grep jet.dat` ]; then
 echo "Error: jet.dat not found."
 exit
fi

gcc darwin.c -lglut
./a.out $nb
1	marissa	1.5	#!/bin/bash
2	marissa	1.4
3	marissa	1.5	mkdir -p .darwinview
4	marissa	1.1
5	marissa	1.6	echo -n "What format is the data in? (binary/netcdf): "
6	marissa	1.5	read nb
7	marissa	1.1
8	marissa	1.5	if [ $nb = 'binary' ]; then
9	marissa	1.1
10	marissa	1.5	echo -n "Would you like to use default settings? (y/n): "
11			read yn
12	marissa	1.6
13	marissa	1.5	if [ $yn = 'n' ]; then
14	marissa	1.4
15	marissa	1.5	rm -f .darwinview/binfilenames
16			rm -f .darwinview/*.datbin
17	marissa	1.4
18	marissa	1.5	xrandr \| grep '*' \| awk -F' ' '{print $1}' > .darwinview/binconfig
19			echo -n "Please enter dimensions of data: "
20			read dim
21			echo $dim >> .darwinview/binconfig
22			echo -n "Please enter dimensions of data sets: "
23			read dimset
24			echo $dimset >> .darwinview/binconfig
25			echo .darwinview/binfilenames >> .darwinview/binconfig
26	marissa	1.6
27	marissa	1.5	echo -n "Please enter directory containing data: "
28			read dir
29	marissa	1.3
30	marissa	1.5	echo -n "Please enter name of file containing desired species: "
31			read fn
32	marissa	1.4
33	marissa	1.5	vn=( `cat $fn` )
34	marissa	1.4
35	marissa	1.5	for name in ${vn[@]}; do
36			touch .darwinview/$name.datbin
37			echo .darwinview/$name.datbin >> .darwinview/binfilenames
38			for i in `ls $dir`; do
39			echo $dir/$i/`ls $dir/$i \| grep $name` >> .darwinview/$name.datbin
40			done
41			done
42
43	marissa	1.6	elif [ `echo $yn \| grep -v y` ]; then
44			echo "Error: please enter 'y' or 'n.'"
45			exit
46	marissa	1.5	fi
47
48			elif [ $nb = 'netcdf' ]; then
49
50			echo -n "Would you like to use default settings? (y/n): "
51			read yn
52
53			if [ $yn = 'n' ]; then
54
55			rm -f .darwinview/ncfilenames
56			rm -f .darwinview/*.datnc
57
58			xrandr \| grep '*' \| awk -F' ' '{print $1}' > .darwinview/ncconfig
59			echo -n "Please enter dimensions of data: "
60			read dim
61			echo $dim >> .darwinview/ncconfig
62			echo -n "Please enter dimensions of data sets: "
63			read dimset
64			echo $dimset >> .darwinview/ncconfig
65			echo .darwinview/ncfilenames >> .darwinview/ncconfig
66
67			echo -n "Please enter directory containing data: "
68			read tmp
69			echo $tmp > .darwinview/netcdf
70	marissa	1.6
71
72	marissa	1.5	echo -n "Please enter directory to write to: "
73			read tmp
74			echo $tmp >> .darwinview/netcdf
75
76			echo -n "Please enter name of file containing desired species: "
77			read tmp
78			echo $tmp >> .darwinview/netcdf
79	marissa	1.6
80	marissa	1.5	echo -n "Please enter name of file containing desired tiles: "
81			read tmp
82			echo $tmp >> .darwinview/netcdf
83	marissa	1.6
84	marissa	1.5	echo -n "Please enter name of file containing desired time steps: "
85			read tmp
86			echo $tmp >> .darwinview/netcdf
87
88	marissa	1.6	elif [ `echo $yn \| grep -v y` ]; then
89			echo "Error: please enter 'y' or 'n.'"
90			exit
91	marissa	1.5	fi
92
93			indir=( `cat .darwinview/netcdf \| head -1` )
94			outdir=( `cat .darwinview/netcdf \| head -2 \| tail -1` )
95			fn=( `cat .darwinview/netcdf \| head -3 \| tail -1` )
96			vn=( `cat $fn` )
97			fn=( `cat .darwinview/netcdf \| head -4 \| tail -1` )
98			tlist=( `cat $fn` )
99			fn=( `cat .darwinview/netcdf \| tail -1` )
100			itlist=( `cat $fn` )
101
102			initdir=`pwd`
103			gcc netcdf.c -I/usr/include/netcdf-3 -L/usr/lib/netcdf-3 -lnetcdf
104			for tstep in ${itlist[@]}; do
105			cd $initdir
106			cd $outdir
107			mkdir -p $tstep
108			cd $tstep
109			for name in ${vn[@]}; do
110			for tile in ${tlist[@]}; do
111			$initdir/a.out ~/${indir}/ptr_tave.${tstep}.${tile}.nc $name
112			done
113			done
114			done
115
116			cd $initdir
117
118			for name in ${vn[@]}; do
119			echo $name
120			touch .darwinview/$name.datnc
121			echo .darwinview/$name.datnc >> .darwinview/ncfilenames
122			for i in `ls $outdir`; do
123			echo $outdir/$i/`ls $outdir/$i \| grep $name` >> .darwinview/$name.datnc
124			done
125			done
126	marissa	1.1
127	marissa	1.6	else
128			echo "Error: please enter 'binary' or 'netcdf.'"
129			exit
130			fi
131
132			if [ ! `ls \| grep jet.dat` ]; then
133			echo "Error: jet.dat not found."
134			exit
135	marissa	1.5	fi
136	marissa	1.1
137	marissa	1.5	gcc darwin.c -lglut
138			./a.out $nb