darwinview/src/darwin.bash

#!/bin/bash

mkdir -p .darwinview

echo -n "What format is the data in? (netcdf/binary): "
read nb

if [ $nb = 'binary' ]; then

  echo -n "Would you like to use default settings? (y/n): "
  read yn

  if [ $yn = 'n' ]; then

    rm -f .darwinview/binfilenames
    rm -f .darwinview/*.datbin

    xrandr | grep '*' | awk -F' ' '{print $1}' > .darwinview/binconfig
    echo -n "Please enter dimensions of data: "
    read dim
    echo $dim >> .darwinview/binconfig
    echo -n "Please enter dimensions of data sets: "
    read dimset
    echo $dimset >> .darwinview/binconfig
    echo .darwinview/binfilenames >> .darwinview/binconfig
    echo -n "Please enter directory containing data: "
    read dir
  
    echo -n "Please enter name of file containing desired species: "
    read fn 
 
    vn=( `cat $fn` ) 

    for name in ${vn[@]}; do
      touch .darwinview/$name.datbin
      echo .darwinview/$name.datbin >> .darwinview/binfilenames 
      for i in `ls $dir`; do
        echo $dir/$i/`ls $dir/$i | grep $name` >> .darwinview/$name.datbin
      done
    done

  fi

elif [ $nb = 'netcdf' ]; then

  echo -n "Would you like to use default settings? (y/n): "
  read yn
 
  if [ $yn = 'n' ]; then

    rm -f .darwinview/ncfilenames
    rm -f .darwinview/*.datnc

    xrandr | grep '*' | awk -F' ' '{print $1}' > .darwinview/ncconfig
    echo -n "Please enter dimensions of data: "
    read dim
    echo $dim >> .darwinview/ncconfig
    echo -n "Please enter dimensions of data sets: "
    read dimset
    echo $dimset >> .darwinview/ncconfig
    echo .darwinview/ncfilenames >> .darwinview/ncconfig

    echo -n "Please enter directory containing data: "
    read tmp 
    echo $tmp > .darwinview/netcdf
    echo -n "Please enter directory to write to: "
    read tmp 
    echo $tmp >> .darwinview/netcdf

    echo -n "Please enter name of file containing desired species: "
    read tmp 
    echo $tmp >> .darwinview/netcdf
    echo -n "Please enter name of file containing desired tiles: "
    read tmp 
    echo $tmp >> .darwinview/netcdf
    echo -n "Please enter name of file containing desired time steps: "
    read tmp
    echo $tmp >> .darwinview/netcdf

  fi

  indir=( `cat .darwinview/netcdf | head -1` )
  outdir=( `cat .darwinview/netcdf | head -2 | tail -1` )
  fn=( `cat .darwinview/netcdf | head -3 | tail -1` )
  vn=( `cat $fn` )
  fn=( `cat .darwinview/netcdf | head -4 | tail -1` )
  tlist=( `cat $fn` )
  fn=( `cat .darwinview/netcdf | tail -1` )
  itlist=( `cat $fn` )

  initdir=`pwd`
  gcc netcdf.c -I/usr/include/netcdf-3 -L/usr/lib/netcdf-3 -lnetcdf
  for tstep in ${itlist[@]}; do 
    cd $initdir
    cd $outdir
    mkdir -p $tstep
    cd $tstep
    for name in ${vn[@]}; do
      for tile in ${tlist[@]}; do
        $initdir/a.out ~/${indir}/ptr_tave.${tstep}.${tile}.nc $name
      done
    done
  done

  cd $initdir

  for name in ${vn[@]}; do
    echo $name
    touch .darwinview/$name.datnc
    echo .darwinview/$name.datnc >> .darwinview/ncfilenames 
    for i in `ls $outdir`; do
      echo $outdir/$i/`ls $outdir/$i | grep $name` >> .darwinview/$name.datnc
    done
  done

fi

gcc darwin.c -lglut
./a.out $nb
1	marissa	1.5	#!/bin/bash
2	marissa	1.4
3	marissa	1.5	mkdir -p .darwinview
4	marissa	1.1
5	marissa	1.5	echo -n "What format is the data in? (netcdf/binary): "
6			read nb
7	marissa	1.1
8	marissa	1.5	if [ $nb = 'binary' ]; then
9	marissa	1.1
10	marissa	1.5	echo -n "Would you like to use default settings? (y/n): "
11			read yn
12	marissa	1.4
13	marissa	1.5	if [ $yn = 'n' ]; then
14	marissa	1.4
15	marissa	1.5	rm -f .darwinview/binfilenames
16			rm -f .darwinview/*.datbin
17	marissa	1.4
18	marissa	1.5	xrandr \| grep '*' \| awk -F' ' '{print $1}' > .darwinview/binconfig
19			echo -n "Please enter dimensions of data: "
20			read dim
21			echo $dim >> .darwinview/binconfig
22			echo -n "Please enter dimensions of data sets: "
23			read dimset
24			echo $dimset >> .darwinview/binconfig
25			echo .darwinview/binfilenames >> .darwinview/binconfig
26			echo -n "Please enter directory containing data: "
27			read dir
28	marissa	1.3
29	marissa	1.5	echo -n "Please enter name of file containing desired species: "
30			read fn
31	marissa	1.4
32	marissa	1.5	vn=( `cat $fn` )
33	marissa	1.4
34	marissa	1.5	for name in ${vn[@]}; do
35			touch .darwinview/$name.datbin
36			echo .darwinview/$name.datbin >> .darwinview/binfilenames
37			for i in `ls $dir`; do
38			echo $dir/$i/`ls $dir/$i \| grep $name` >> .darwinview/$name.datbin
39			done
40			done
41
42			fi
43
44			elif [ $nb = 'netcdf' ]; then
45
46			echo -n "Would you like to use default settings? (y/n): "
47			read yn
48
49			if [ $yn = 'n' ]; then
50
51			rm -f .darwinview/ncfilenames
52			rm -f .darwinview/*.datnc
53
54			xrandr \| grep '*' \| awk -F' ' '{print $1}' > .darwinview/ncconfig
55			echo -n "Please enter dimensions of data: "
56			read dim
57			echo $dim >> .darwinview/ncconfig
58			echo -n "Please enter dimensions of data sets: "
59			read dimset
60			echo $dimset >> .darwinview/ncconfig
61			echo .darwinview/ncfilenames >> .darwinview/ncconfig
62
63			echo -n "Please enter directory containing data: "
64			read tmp
65			echo $tmp > .darwinview/netcdf
66			echo -n "Please enter directory to write to: "
67			read tmp
68			echo $tmp >> .darwinview/netcdf
69
70			echo -n "Please enter name of file containing desired species: "
71			read tmp
72			echo $tmp >> .darwinview/netcdf
73			echo -n "Please enter name of file containing desired tiles: "
74			read tmp
75			echo $tmp >> .darwinview/netcdf
76			echo -n "Please enter name of file containing desired time steps: "
77			read tmp
78			echo $tmp >> .darwinview/netcdf
79
80			fi
81
82			indir=( `cat .darwinview/netcdf \| head -1` )
83			outdir=( `cat .darwinview/netcdf \| head -2 \| tail -1` )
84			fn=( `cat .darwinview/netcdf \| head -3 \| tail -1` )
85			vn=( `cat $fn` )
86			fn=( `cat .darwinview/netcdf \| head -4 \| tail -1` )
87			tlist=( `cat $fn` )
88			fn=( `cat .darwinview/netcdf \| tail -1` )
89			itlist=( `cat $fn` )
90
91			initdir=`pwd`
92			gcc netcdf.c -I/usr/include/netcdf-3 -L/usr/lib/netcdf-3 -lnetcdf
93			for tstep in ${itlist[@]}; do
94			cd $initdir
95			cd $outdir
96			mkdir -p $tstep
97			cd $tstep
98			for name in ${vn[@]}; do
99			for tile in ${tlist[@]}; do
100			$initdir/a.out ~/${indir}/ptr_tave.${tstep}.${tile}.nc $name
101			done
102			done
103			done
104
105			cd $initdir
106
107			for name in ${vn[@]}; do
108			echo $name
109			touch .darwinview/$name.datnc
110			echo .darwinview/$name.datnc >> .darwinview/ncfilenames
111			for i in `ls $outdir`; do
112			echo $outdir/$i/`ls $outdir/$i \| grep $name` >> .darwinview/$name.datnc
113			done
114			done
115	marissa	1.1
116	marissa	1.5	fi
117	marissa	1.1
118	marissa	1.5	gcc darwin.c -lglut
119			./a.out $nb