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marissa |
1.1 |
#!/bin/bash |
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marissa |
1.3 |
echo -n "What format is the data in? (netcdf/binary): " |
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read nb |
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marissa |
1.1 |
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marissa |
1.3 |
if [ $nb = 'binary' ]; then |
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marissa |
1.1 |
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marissa |
1.3 |
echo -n "Would you like to use default settings? (y/n): " |
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read yn |
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marissa |
1.1 |
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marissa |
1.3 |
if [ $yn = 'n' ]; then |
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rm -f .darwinview/binfilenames |
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rm -f .darwinview/*.datbin |
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echo -n "Please enter screen resolution: " |
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read win |
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echo $win > .darwinview/binconfig |
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echo -n "Please enter dimensions of data: " |
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read dim |
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echo $dim >> .darwinview/binconfig |
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echo -n "Please enter dimensions of data sets: " |
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read dimset |
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echo $dimset >> .darwinview/binconfig |
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echo .darwinview/binfilenames >> .darwinview/binconfig |
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echo -n "Please enter directory containing data: " |
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read dir |
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echo -n "Please enter name of file containing desired species: " |
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read fn |
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vn=( `cat $fn` ) |
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for name in ${vn[@]}; do |
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touch .darwinview/$name.datbin |
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echo .darwinview/$name.datbin >> .darwinview/binfilenames |
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for i in `ls $dir`; do |
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echo $dir/$i/`ls $dir/$i | grep $name` >> .darwinview/$name.datbin |
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done |
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done |
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fi |
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elif [ $nb = 'netcdf' ]; then |
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echo -n "Would you like to use default settings? (y/n): " |
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read yn |
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if [ $yn = 'n' ]; then |
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rm -f .darwinview/ncfilenames |
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rm -f .darwinview/*.datnc |
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echo -n "Please enter screen resolution: " |
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read win |
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echo $win > .darwinview/ncconfig |
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echo -n "Please enter dimensions of data: " |
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read dim |
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echo $dim >> .darwinview/ncconfig |
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echo -n "Please enter dimensions of data sets: " |
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read dimset |
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echo $dimset >> .darwinview/ncconfig |
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echo .darwinview/ncfilenames >> .darwinview/ncconfig |
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echo -n "Please enter directory containing data: " |
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read tmp |
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echo $tmp > .darwinview/netcdf |
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echo -n "Please enter directory to write to: " |
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read tmp |
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echo $tmp >> .darwinview/netcdf |
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echo -n "Please enter name of file containing desired species: " |
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read tmp |
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echo $tmp >> .darwinview/netcdf |
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echo -n "Please enter name of file containing desired tiles: " |
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read tmp |
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echo $tmp >> .darwinview/netcdf |
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echo -n "Please enter name of file containing desired time steps: " |
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read tmp |
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echo $tmp >> .darwinview/netcdf |
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fi |
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indir=( `cat .darwinview/netcdf | head -1` ) |
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outdir=( `cat .darwinview/netcdf | head -2 | tail -1` ) |
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fn=( `cat .darwinview/netcdf | head -3 | tail -1` ) |
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vn=( `cat $fn` ) |
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fn=( `cat .darwinview/netcdf | head -4 | tail -1` ) |
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tlist=( `cat $fn` ) |
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fn=( `cat .darwinview/netcdf | tail -1` ) |
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itlist=( `cat $fn` ) |
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initdir=`pwd` |
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gcc ~/netcdf.c -I/usr/include/netcdf-3 -L/usr/lib/netcdf-3 -lnetcdf |
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for tstep in ${itlist[@]}; do |
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cd $initdir |
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cd $outdir |
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mkdir -p $tstep |
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cd $tstep |
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for name in ${vn[@]}; do |
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for tile in ${tlist[@]}; do |
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/home/marissa/a.out ~/${indir}/ptr_tave.${tstep}.${tile}.nc $name |
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done |
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done |
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done |
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cd $initdir |
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for name in ${vn[@]}; do |
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touch .darwinview/$name.datnc |
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echo .darwinview/$name.datnc >> .darwinview/ncfilenames |
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for i in `ls $outdir`; do |
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echo $outdir/$i/`ls $outdir/$i | grep $name` >> .darwinview/$name.datnc |
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marissa |
1.1 |
done |
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done |
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fi |
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marissa |
1.3 |
gcc darwin.c -lglut |
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./a.out $nb |
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