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jahn |
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C $Header: /u/gcmpack/MITgcm_contrib/darwin/pkg/darwin/darwin_init_fixed.F,v 1.13 2009/03/10 20:44:30 stephd Exp $ |
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C $Name: $ |
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#include "CPP_OPTIONS.h" |
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#include "PTRACERS_OPTIONS.h" |
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#include "DARWIN_OPTIONS.h" |
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#ifdef ALLOW_PTRACERS |
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#ifdef ALLOW_DARWIN |
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#ifdef ALLOW_QUOTA |
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c=============================================================================== |
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C=============================================================================== |
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CStartofinterface |
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SUBROUTINE QUOTA_INIT_FIXED(myThid) |
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C =============== Global data ========================================== |
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C === Global variables === |
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implicit none |
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#include "SIZE.h" |
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#include "EEPARAMS.h" |
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#include "PARAMS.h" |
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#include "GRID.h" |
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#include "DYNVARS.h" |
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#include "GCHEM.h" |
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#include "DARWIN_PARAMS.h" |
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#include "QUOTA_SIZE.h" |
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#include "QUOTA.h" |
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INTEGER myThid |
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C============== Local variables ============================================ |
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C msgBuf - Informational/error meesage buffer |
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CHARACTER*(MAX_LEN_MBUF) msgBuf |
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_RL pday |
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INTEGER i,j,k,bi,bj,ii,jp,ko |
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INTEGER tmp |
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INTEGER prec |
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CHARACTER*(MAX_LEN_MBUF) fn |
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C /--------------------------------------------------------------\ |
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C | initialise common block biochemical parameters | |
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C \--------------------------------------------------------------/ |
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WRITE(msgBuf,'(A)') |
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&'// =======================================================' |
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CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
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& SQUEEZE_RIGHT, myThid ) |
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WRITE(msgBuf,'(A)') '// Quota loading parameters' |
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CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
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& SQUEEZE_RIGHT, myThid ) |
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WRITE(msgBuf,'(A)') |
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&'// =======================================================' |
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CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
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& SQUEEZE_RIGHT, myThid ) |
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c c define 1 day in seconds |
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pday = 86400.0 _d 0 |
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c par parameters |
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parfrac= 0.4 _d 0 !fraction Qsw that is PAR |
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parconv= 1. _d 0/0.2174 _d 0 !conversion from W/m2 to uEin/m2/s |
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istar=90. _d 0 ! w/m2 |
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c |
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c |
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c set temperature function |
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tempcoeff1 = 1. _d 0/3. _d 0 |
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tempcoeff2_small = 0.001 _d 0 |
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tempcoeff2_big = 0.0003 _d 0 |
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tempcoeff3 = 1.04 _d 0 |
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tempmax = 20. _d 0 ! 32. _d 0 |
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temprange = 22. _d 0 ! 30. _d 0 |
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tempnorm = 0.3 _d 0 ! 1. _d 0 |
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tempdecay = 4. _d 0 |
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c set up diagnostics |
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#ifdef ALLOW_MNC |
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IF ( useMNC ) THEN |
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CALL DARWIN_MNC_INIT( myThid ) |
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ENDIF |
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#endif /* ALLOW_MNC */ |
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COJ set up diagnostics |
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#ifdef ALLOW_DIAGNOSTICS |
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IF ( useDIAGNOSTICS ) THEN |
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CALL DARWIN_DIAGNOSTICS_INIT( myThid ) |
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ENDIF |
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#endif /* ALLOW_DIAGNOSTICS */ |
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COJ |
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c----------------------------------------------------- |
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c "Standard" parameters |
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! maximum assimilation efficiency |
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ass_eff = 0.70 _d 0 |
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! organic matter sinking rate |
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orgsink(1) = 0.00 _d 0 /pday |
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orgsink(2) = 1.00 _d +1 /pday |
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! cost of biosynthesis |
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biosynth = 2.33 _d 0 |
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! nitrogen uptake |
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amminhib = 4.60 _d 0 |
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! nitrification |
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amm2nrite = 2.00 _d 0 /pday |
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nrite2nrate = 0.10 _d 0 /pday |
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PAR0 = 10.0 _d 0 |
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! iron |
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! alpfe = 1.00 _d 0 ! 3D model |
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alpfe = 0.05 _d 0 ! 1D model |
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scav = 1.10 _d -3 /pday |
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ligand_stab = 2.00 _d +5 |
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ligand_tot = 1.00 _d -3 |
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freefemax = 0.10 _d -3 |
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#ifdef IRON_SED_SOURCE |
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c iron sediment source |
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depthfesed=1000.0 _d 0 !depth above which to add sediment source |
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fesedflux =1.0 _d 0 * 1.0 _d -3 / (86400.0 _d 0) !iron flux (mmol/m2/s) |
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fesedflux_pcm =0.68 _d 0 * 1.0 _d -3 !iron flux (mmol/m3/s) per |
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c mmol POC/m3/s |
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#endif |
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! basic light |
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k_w = 0.04 _d 0 |
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k_chl = 0.03 _d 0 |
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! chl2nmax = 3.00 _d 0 ! Moore 2002 (labelled as GD98) |
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chl2nmax = 5.6 _d 0 ! Geider 1998 |
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c----------------------------------------------------- |
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c ALLOMETRIC PARAMETERS |
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c parameter = aV^b |
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c if errors are relative (*/) then state as "log(error)" |
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c if errors are absolute (+-) then state as "error" |
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cccccccccccccccccccccccccccccccccccccccccccccccccccccc |
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! Initial slope of PI curve |
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a_alphachl = 3.83 _d -7 ! mmol C (mg chl a)^-1 (mu Ein m^-2)^-1 |
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ae_alphachl = 1.00 _d 0 |
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b_alphachl = 0.00 _d 0 |
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be_alphachl = 0.00 _d 0 |
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cccccccccccccccccccccccccccccccccccccccccccccccccccccc |
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! maximum specific grazing rate |
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a_graz = 21.9 _d 0 / pday ! d^-1 |
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ae_graz = 1.00 _d 0 |
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b_graz = -0.16 _d 0 |
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be_graz = 0.02 _d 0 |
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! half saturation grazing prey carbon concentration |
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! a_kg = 2.24 _d +1 ! mmol C m^-3 |
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a_kg = 0.56 _d +1 ! mmol C m^-3 |
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ae_kg = 3.80 _d 0 |
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b_kg = 0.00 _d 0 |
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be_kg = 0.03 _d 0 |
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cccccccccccccccccccccccccccccccccccccccccccccccccccccc |
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! sinking (enter as positive downwards) |
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a_biosink = 0.28 _d -1 / pday ! m d^-1 |
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ae_biosink = 1.00 _d 0 |
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b_biosink = 0.39 _d 0 |
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be_biosink = 0.00 _d 0 |
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! swimming velocity (enter as positive upwards - converted in quota_generate_phyto.F) |
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a_bioswim = 0.00 _d 0 / pday ! m d^-1 |
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ae_bioswim = 1.00 _d 0 |
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b_bioswim = 0.18 _d 0 |
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be_bioswim = 0.00 _d 0 |
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cccccccccccccccccccccccccccccccccccccccccccccccccccccc |
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! mortality |
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a_mort = 0.05 _d 0 / pday ! d^-1 |
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ae_mort = 1.00 _d 0 |
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b_mort = 0.00 _d 0 |
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be_mort = 0.00 _d 0 |
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! predator prey preference distribution parameters |
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a_prdpry = 1024. _d 0 ! dimensionless |
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ae_prdpry = 1.00 _d 0 |
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b_prdpry = 0.00 _d 0 |
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be_prdpry = 0.00 _d 0 |
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cccccccccccccccccccccccccccccccccccccccccccccccccccccc |
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! carbon |
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! max photosynthetic rate (modified in quota_generate_plankton.F) |
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a_vmaxi(iDIC) = 1.00 _d 0 / pday ! d^-1 |
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ae_vmaxi(iDIC) = 1.00 _d 0 |
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b_vmaxi(iDIC) = -0.15 _d 0 |
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be_vmaxi(iDIC) = 0.05 _d 0 |
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! cellular carbon content |
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a_qcarbon = 1.80 _d -11 ! mmol C cell^-1 |
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ae_qcarbon = 1.36 _d 0 |
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b_qcarbon = 0.94 _d 0 |
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be_qcarbon = 0.04 _d 0 |
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! respiration (Note function of cellular C --> aC^b!) |
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! a_respir = 3.21 _d -11 / pday ! mmol C cell^-1 d^-1 |
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a_respir = 0.00 _d 0 |
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ae_respir = 1.00 _d 0 |
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b_respir = 0.93 _d 0 |
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be_respir = 0.00 _d 0 |
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! carbon excretion |
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! a_kexc(iCarb) = 0.32 _d -1 / pday ! d^-1 |
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a_kexc(iCarb) = 0.00 _d 0 |
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ae_kexc(iCarb) = 1.36 _d 0 |
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b_kexc(iCarb) = -0.33 _d 0 |
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be_kexc(iCarb) = 0.09 _d 0 |
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! fraction grazing to DOC |
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a_beta_graz(iCarb) = 1.10 _d 0 |
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ae_beta_graz(iCarb) = 1.00 _d 0 |
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b_beta_graz(iCarb) = -0.30 _d 0 |
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be_beta_graz(iCarb) = 0.00 _d 0 |
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! fraction mortality to DOC |
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a_beta_mort(iCarb) = 1.10 _d 0 |
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ae_beta_mort(iCarb) = 1.00 _d 0 |
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b_beta_mort(iCarb) = -0.30 _d 0 |
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be_beta_mort(iCarb) = 0.00 _d 0 |
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! carbon remineralisation rate |
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remin(iCarb,1) = 0.01 _d 0 /pday |
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remin(iCarb,2) = 0.02 _d 0 /pday |
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! nitrogen & nitrate |
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! maximum NO3 uptake rate |
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a_vmaxi(iNO3) = 0.51 _d 0 / pday ! mmol N (mmol C)^-1 d^-1 |
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ae_vmaxi(iNO3) = 1.00 _d 0 |
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b_vmaxi(iNO3) = -0.27 _d 0 |
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be_vmaxi(iNO3) = 0.00 _d 0 |
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! NO3 half-saturation |
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a_kn(iNO3) = 0.17 _d 0 ! (mmol N m^-3) |
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ae_kn(iNO3) = 1.36 _d 0 |
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b_kn(iNO3) = 0.27 _d 0 |
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be_kn(iNO3) = 0.07 _d 0 |
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! N minimum quota |
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a_qmin(iNitr) = 0.07 _d 0 ! mmol N (mmol C)^-1 |
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ae_qmin(iNitr) = 1.00 _d 0 |
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b_qmin(iNitr) = -0.17 _d 0 |
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be_qmin(iNitr) = 0.00 _d 0 |
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! N maximum quota |
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a_qmax(iNitr) = 0.25 _d 0 ! mmol N (mmol C)^-1 |
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ae_qmax(iNitr) = 1.00 _d 0 |
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b_qmax(iNitr) = -0.13 _d 0 |
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be_qmax(iNitr) = 0.00 _d 0 |
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! nitrogen excretion |
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a_kexc(iNitr) = 0.24 _d -1 / pday ! d^-1 |
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a_kexc(iNitr) = 0.00 _d 0 |
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ae_kexc(iNitr) = 1.36 _d 0 |
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b_kexc(iNitr) = -0.33 _d 0 |
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be_kexc(iNitr) = 0.09 _d 0 |
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! fraction grazing to DON |
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a_beta_graz(iNitr) = 1.10 _d 0 |
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ae_beta_graz(iNitr) = 1.00 _d 0 |
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b_beta_graz(iNitr) = -0.30 _d 0 |
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be_beta_graz(iNitr) = 0.00 _d 0 |
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! fraction mortality to DON |
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a_beta_mort(iNitr) = 1.10 _d 0 |
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ae_beta_mort(iNitr) = 1.00 _d 0 |
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b_beta_mort(iNitr) = -0.30 _d 0 |
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be_beta_mort(iNitr) = 0.00 _d 0 |
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! N remineralisation rate |
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remin(iNitr,1) = 0.01 _d 0 /pday |
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remin(iNitr,2) = 0.02 _d 0 /pday |
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#ifdef NITRITE |
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! nitrite |
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! maximum NO2 uptake rate |
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a_vmaxi(iNO2) = 0.51 _d 0 / pday ! mmol N (mmol C)^-1 d^-1 |
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ae_vmaxi(iNO2) = 1.36 _d 0 |
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b_vmaxi(iNO2) = -0.27 _d 0 |
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be_vmaxi(iNO2) = 0.07 _d 0 |
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! NO2 half-saturation |
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a_kn(iNO2) = 0.17 _d 0 ! (mmol N m^-3) |
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ae_kn(iNO2) = 1.36 _d 0 |
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b_kn(iNO2) = 0.27 _d 0 |
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be_kn(iNO2) = 0.08 _d 0 |
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#endif |
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#ifdef AMMON |
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! ammonium |
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! maximum NH4 uptake rate |
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a_vmaxi(iNH4) = 0.26 _d 0 / pday ! mmol N (mmol C)^-1 d^-1 |
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ae_vmaxi(iNH4) = 1.36 _d 0 |
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b_vmaxi(iNH4) = -0.27 _d 0 |
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be_vmaxi(iNH4) = 0.07 _d 0 |
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! NH4 half-saturation |
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a_kn(iNH4) = 0.85 _d -1 ! (mmol N m^-3) |
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ae_kn(iNH4) = 1.36 _d 0 |
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b_kn(iNH4) = 0.27 _d 0 |
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be_kn(iNH4) = 0.08 _d 0 |
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#endif |
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#ifdef PQUOTA |
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! phosphate |
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! maximum PO4 uptake rate |
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a_vmaxi(iPO4) = 0.77 _d -1 / pday ! mmol P (mmol C)^-1 d^-1 |
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ae_vmaxi(iPO4) = 1.36 _d 0 |
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b_vmaxi(iPO4) = -0.27 _d 0 |
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be_vmaxi(iPO4) = 0.07 _d 0 |
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! PO4 half-saturation |
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a_kn(iPO4) = 0.26 _d -1 ! (mmol N m^-3) |
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ae_kn(iPO4) = 1.36 _d 0 |
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b_kn(iPO4) = 0.27 _d 0 |
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be_kn(iPO4) = 0.08 _d 0 |
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! minimum P quota |
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a_qmin(iPhos) = 2.00 _d -3 ! mmol N (mmol C)^-1 |
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ae_qmin(iPhos) = 1.00 _d 0 |
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b_qmin(iPhos) = 0.00 _d 0 |
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be_qmin(iPhos) = 0.00 _d 0 |
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! maximum P quota |
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a_qmax(iPhos) = 0.01 _d 0 ! mmol N (mmol C)^-1 |
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ae_qmax(iPhos) = 1.20 _d 0 |
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b_qmax(iPhos) = 0.00 _d 0 |
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be_qmax(iPhos) = 0.00 _d 0 |
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! P excretion |
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a_kexc(iPhos) = 0.24 _d -1 / pday ! d^-1 |
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ae_kexc(iPhos) = 1.36 _d 0 |
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b_kexc(iPhos) = -0.33 _d 0 |
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be_kexc(iPhos) = 0.09 _d 0 |
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! fraction grazing to DOP |
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a_beta_graz(iPhos) = 1.10 _d 0 |
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ae_beta_graz(iPhos) = 1.00 _d 0 |
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b_beta_graz(iPhos) = -0.30 _d 0 |
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be_beta_graz(iPhos) = 0.00 _d 0 |
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! fraction mortality to DOP |
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a_beta_mort(iPhos) = 1.10 _d 0 |
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ae_beta_mort(iPhos) = 1.00 _d 0 |
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b_beta_mort(iPhos) = -0.30 _d 0 |
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be_beta_mort(iPhos) = 0.00 _d 0 |
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! P remineralisation rate |
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remin(iPhos,1) = 0.01 _d 0 /pday |
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remin(iPhos,2) = 0.02 _d 0 /pday |
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#endif |
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#ifdef SQUOTA |
| 312 |
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! silicate |
| 313 |
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! maximum Si uptake rate |
| 314 |
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a_vmaxi(iSi) = 0.77 _d -1 / pday ! mmol Fe (mmol C)^-1 d^-1 |
| 315 |
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ae_vmaxi(iSi) = 1.36 _d 0 |
| 316 |
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b_vmaxi(iSi) = -0.27 _d 0 |
| 317 |
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be_vmaxi(iSi) = 0.07 _d 0 |
| 318 |
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! Si half-saturation |
| 319 |
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a_kn(iSi) = 0.24 _d -1 ! (mmol N m^-3) |
| 320 |
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ae_kn(iSi) = 1.36 _d 0 |
| 321 |
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b_kn(iSi) = 0.27 _d 0 |
| 322 |
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be_kn(iSi) = 0.08 _d 0 |
| 323 |
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! minimum Si quota |
| 324 |
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! a_qmin(iSili) = 0.84 _d -1 ! mmol N (mmol C)^-1 |
| 325 |
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! ae_qmin(iSili) = 1.00 _d 0 |
| 326 |
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! b_qmin(iSili) = -0.17 _d 0 |
| 327 |
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! be_qmin(iSili) = 0.00 _d 0 |
| 328 |
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a_qmin(iSili) = 2.00 _d -3 ! mmol N (mmol C)^-1 |
| 329 |
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ae_qmin(iSili) = 1.00 _d 0 |
| 330 |
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b_qmin(iSili) = 0.00 _d 0 |
| 331 |
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be_qmin(iSili) = 0.00 _d 0 |
| 332 |
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! maximum Si quota |
| 333 |
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! a_qmax(iSili) = 0.30 _d 0 ! mmol N (mmol C)^-1 |
| 334 |
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! ae_qmax(iSili) = 1.00 _d 0 |
| 335 |
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! b_qmax(iSili) = -0.13 _d 0 |
| 336 |
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! be_qmax(iSili) = 0.00 _d 0 |
| 337 |
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a_qmax(iSili) = 4.00 _d -3 ! mmol N (mmol C)^-1 |
| 338 |
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ae_qmax(iSili) = 1.20 _d 0 |
| 339 |
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b_qmax(iSili) = 0.00 _d 0 |
| 340 |
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be_qmax(iSili) = 0.00 _d 0 |
| 341 |
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! Si excretion |
| 342 |
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a_kexc(iSili) = 0.00 _d 0 / pday ! d^-1 |
| 343 |
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ae_kexc(iSili) = 1.00 _d 0 |
| 344 |
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b_kexc(iSili) = 0.00 _d 0 |
| 345 |
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be_kexc(iSili) = 0.00 _d 0 |
| 346 |
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! fraction grazing to DOSi |
| 347 |
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a_beta_graz(iSili) = 0.00 _d 0 |
| 348 |
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ae_beta_graz(iSili) = 1.00 _d 0 |
| 349 |
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b_beta_graz(iSili) = 0.00 _d 0 |
| 350 |
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be_beta_graz(iSili) = 0.00 _d 0 |
| 351 |
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! fraction mortality to DOSi |
| 352 |
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a_beta_mort(iSili) = 0.00 _d 0 |
| 353 |
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ae_beta_mort(iSili) = 1.00 _d 0 |
| 354 |
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b_beta_mort(iSili) = 0.00 _d 0 |
| 355 |
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be_beta_mort(iSili) = 0.00 _d 0 |
| 356 |
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! POSi remineralisation rate |
| 357 |
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remin(iSili,1) = 0.00 _d 0 /pday |
| 358 |
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remin(iSili,2) = 0.33 _d -2 /pday |
| 359 |
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#endif |
| 360 |
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#ifdef FQUOTA |
| 361 |
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! iron |
| 362 |
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! maximum Fe uptake rate |
| 363 |
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! a_vmaxi(iFeT) = 96.2 _d -6 / pday ! mmol Fe (mmol C)^-1 d^-1 |
| 364 |
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a_vmaxi(iFeT) = 14.0 _d -6 / pday |
| 365 |
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ae_vmaxi(iFeT) = 1.36 _d 0 |
| 366 |
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b_vmaxi(iFeT) = -0.27 _d 0 |
| 367 |
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be_vmaxi(iFeT) = 0.07 _d 0 |
| 368 |
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! Fe half-saturation |
| 369 |
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! a_kn(ifeT) = 32.1 _d -6 ! (mmol N m^-3) |
| 370 |
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a_kn(ifeT) = 80.0 _d -6 |
| 371 |
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ae_kn(iFeT) = 1.36 _d 0 |
| 372 |
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b_kn(iFeT) = 0.27 _d 0 |
| 373 |
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be_kn(iFeT) = 0.08 _d 0 |
| 374 |
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! minimum Fe quota |
| 375 |
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a_qmin(iIron) = 1.50 _d -6 ! mmol N (mmol C)^-1 - Mongin (2006) |
| 376 |
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! a_qmin(iIron) = 5.00 _d -6 ! mmol N (mmol C)^-1 |
| 377 |
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ae_qmin(iIron) = 1.00 _d 0 |
| 378 |
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b_qmin(iIron) = 0.00 _d 0 |
| 379 |
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be_qmin(iIron) = 0.00 _d 0 |
| 380 |
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! maximum Fe quota |
| 381 |
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a_qmax(iIron) = 80.0 _d -6 ! mmol N (mmol C)^-1 - Mongin (2006) |
| 382 |
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! a_qmax(iIron) = 15.0 _d -6 ! mmol N (mmol C)^-1 |
| 383 |
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ae_qmax(iIron) = 1.20 _d 0 |
| 384 |
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b_qmax(iIron) = 0.00 _d 0 |
| 385 |
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be_qmax(iIron) = 0.00 _d 0 |
| 386 |
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! Fe excretion |
| 387 |
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a_kexc(iIron) = 0.00 _d 0 / pday ! d^-1 |
| 388 |
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ae_kexc(iIron) = 1.00 _d 0 |
| 389 |
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b_kexc(iIron) = 0.00 _d 0 |
| 390 |
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be_kexc(iIron) = 0.00 _d 0 |
| 391 |
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! fraction grazing to DOFe |
| 392 |
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a_beta_graz(iIron) = 1.10 _d 0 |
| 393 |
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ae_beta_graz(iIron) = 1.00 _d 0 |
| 394 |
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b_beta_graz(iIron) = -0.30 _d 0 |
| 395 |
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be_beta_graz(iIron) = 0.00 _d 0 |
| 396 |
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! fraction mortality to DOFe |
| 397 |
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a_beta_mort(iIron) = 1.10 _d 0 |
| 398 |
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ae_beta_mort(iIron) = 1.00 _d 0 |
| 399 |
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b_beta_mort(iIron) = -0.30 _d 0 |
| 400 |
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be_beta_mort(iIron) = 0.00 _d 0 |
| 401 |
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! Fe remineralisation rate |
| 402 |
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remin(iIron,1) = 0.01 _d 0 /pday |
| 403 |
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remin(iIron,2) = 0.02 _d 0 /pday |
| 404 |
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#endif |
| 405 |
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cccccccccccccccccccccccccccccccccccccccccccccccccccccc |
| 406 |
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c end allometric scaling |
| 407 |
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cccccccccccccccccccccccccccccccccccccccccccccccccccccc |
| 408 |
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| 409 |
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RETURN |
| 410 |
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END |
| 411 |
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C============================================================================ |
| 412 |
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#endif /*ALLOW_QUOTA*/ |
| 413 |
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#endif /*ALLOW_DARWIN*/ |
| 414 |
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#endif /*ALLOW_PTRACERS*/ |
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