| 1 |
C $Header: /u/gcmpack/MITgcm_contrib/darwin/pkg/darwin/DARWIN.h,v 1.8 2009/03/10 20:44:30 stephd Exp $ |
| 2 |
C $Name: $ |
| 3 |
|
| 4 |
c QUOTA.h |
| 5 |
c description: Key parameter arrays for generalized ecosystem quota model |
| 6 |
c Ben Ward, Summer/Autumn 2009 |
| 7 |
c |
| 8 |
c adapted from |
| 9 |
c DARWIN.h |
| 10 |
c description: Key parameter arrays for generalized ecosystem model |
| 11 |
c Mick Follows, Scott Grant Fall/Winter 2005 |
| 12 |
c Stephanie Dutkiewicz Spring/Summer 2006 |
| 13 |
c |
| 14 |
c iimax = no of modelled nutrient elements |
| 15 |
c npmax = no of "functional groups" of plankton |
| 16 |
c komax = no of "functional groups" of organic matter |
| 17 |
c |
| 18 |
c Parameter arrays |
| 19 |
c NOTE: list not complete!! |
| 20 |
c |
| 21 |
c vmaxi(iimax,npmax) - maximum uptake rate for inorganic nutrients (and DIC) |
| 22 |
c kn(iimax,npmax) - 1/2 saturation concentration for inorganic nutrient uptake |
| 23 |
c biosynth - cost of biosynthesis |
| 24 |
c amminhib - ammonium inhibition |
| 25 |
c qcarbon(npmax) - Mean cell carbon content |
| 26 |
c qmin(iomax,npmax) - minimum quota required to sustain growth |
| 27 |
c qmax(iomax,npmax) - satiated quota (i.e. required for max growth rate) |
| 28 |
c alphachl(npmax) - chl specific initial slope of PI curve |
| 29 |
c chl2nmax - maximum cellular chl to nitrogen ratio |
| 30 |
c pp_opt(npmax) - optimal prd_pry preference ratio |
| 31 |
c pp_sig(npmax) - std.dev. of prd_pry preference ratio |
| 32 |
c graz_pref(npmax,npmax) - size ratio based lognormal grazing preference matrix |
| 33 |
c graz(npmax) - maximum grazing rate of predator |
| 34 |
c kg(npmax) - 1/2 saturation prey biomass for grazing |
| 35 |
c hollingtype - exponent of Holling grazing function |
| 36 |
c ass_eff - maximum assimilation efficiency |
| 37 |
c assim_graz(npmax,npmax) - assimilation efficiency of grazing |
| 38 |
c beta_graz(iomax-iChl,npmax) - fraction of sloppy feeding to DOM |
| 39 |
c kexc(iimax,npmax) - biomass specific excretion rate |
| 40 |
c kmort(npmax) - plankton specific mortality rate |
| 41 |
c beta_mort(iomax-iChl,npmax) - fraction of nortality to DOM |
| 42 |
c respiration(npmax) - respiration rate |
| 43 |
c |
| 44 |
c biosink(npmax) - plankton sinking rate |
| 45 |
c bioswim(npmax) - plankton swimming rate |
| 46 |
c orgsink(iimax,komax) - organic matter sinking rate |
| 47 |
c remin(iomax-iChl,komax) - organic matter remineralisation rate |
| 48 |
c amm2nrite - ammonium to nitrite oxidation rate |
| 49 |
c nrite2nrate - nitrite to nitrate oxidation rate |
| 50 |
c k_w - light attenuation by water |
| 51 |
c k_chl - light attenuation by chlorophyll |
| 52 |
c |
| 53 |
c use_NO3(npmax) - nitrate use on/off |
| 54 |
c use_Si(npmax) - silicate use on/off |
| 55 |
c autotrophy(npmax) - degree of autotrophy (1 = pure auto, 0 = pure hetero) |
| 56 |
c pft(npmax) - phytoplankton functional type |
| 57 |
c 1=prochlorococcus, 2=synechococcus, 3=small eukaryotes, |
| 58 |
c 4=diatoms, 5=dinoflagellates, 6=generic grazers |
| 59 |
c |
| 60 |
COMMON/quota_ecoparam/ |
| 61 |
& vmaxi,kn, |
| 62 |
& biosynth, |
| 63 |
& amminhib, |
| 64 |
& qcarbon, |
| 65 |
& qmin,qmax, |
| 66 |
& alphachl,chl2nmax, |
| 67 |
& pp_opt,pp_sig,graz_pref, |
| 68 |
& graz,kg, |
| 69 |
& ass_eff,assim_graz,beta_graz, |
| 70 |
& kexc, |
| 71 |
& kmort,beta_mort, |
| 72 |
& respiration, |
| 73 |
& biosink,bioswim,orgsink, |
| 74 |
& remin, |
| 75 |
& autotrophy, |
| 76 |
& pft, |
| 77 |
& amm2nrite,nrite2nrate, |
| 78 |
& k_w,k_chl, |
| 79 |
& phytoTempCoeff, phytoTempExp1, |
| 80 |
& phytoTempExp2, phytoTempOptimum, phytoDecayPower, |
| 81 |
& tempcoeff1, tempcoeff2_small, |
| 82 |
& tempcoeff2_big, tempcoeff3, |
| 83 |
& tempmax, temprange, tempnorm, tempdecay, |
| 84 |
& ngrowfac, ilight, |
| 85 |
& PAR0, |
| 86 |
& nsource,ngroups, |
| 87 |
& use_NO3,use_Si, |
| 88 |
& hollingtype |
| 89 |
|
| 90 |
_RL vmaxi(iimax,npmax) |
| 91 |
_RL kn(iimax,npmax) |
| 92 |
_RL biosynth |
| 93 |
_RL amminhib |
| 94 |
_RL qcarbon(npmax) |
| 95 |
_RL qmin(iomax,npmax) |
| 96 |
_RL qmax(iomax,npmax) |
| 97 |
_RL alphachl(npmax) |
| 98 |
_RL chl2nmax |
| 99 |
_RL pp_opt(npmax),pp_sig(npmax) |
| 100 |
_RL graz_pref(npmax,npmax) |
| 101 |
_RL graz(npmax) |
| 102 |
_RL kg(npmax) |
| 103 |
_RL ass_eff |
| 104 |
_RL assim_graz(npmax,npmax) |
| 105 |
_RL beta_graz(iomax-iChl,npmax) |
| 106 |
_RL kexc(iimax,npmax) |
| 107 |
_RL kmort(npmax) |
| 108 |
_RL beta_mort(iomax-iChl,npmax) |
| 109 |
_RL respiration(npmax) |
| 110 |
_RL biosink(npmax) |
| 111 |
_RL bioswim(npmax) |
| 112 |
_RL orgsink(komax) |
| 113 |
_RL remin(iomax-iChl,komax) |
| 114 |
c |
| 115 |
_RL autotrophy(npmax) |
| 116 |
c |
| 117 |
_RL amm2nrite |
| 118 |
_RL nrite2nrate |
| 119 |
_RL PAR0 |
| 120 |
_RL k_w |
| 121 |
_RL k_chl |
| 122 |
_RL phytoTempCoeff(npmax) |
| 123 |
_RL phytoTempExp1(npmax) |
| 124 |
_RL phytoTempExp2(npmax) |
| 125 |
_RL phytoTempOptimum(npmax) |
| 126 |
_RL phytoDecayPower(npmax) |
| 127 |
_RL tempcoeff1, tempcoeff2_big |
| 128 |
_RL tempcoeff2_small, tempcoeff3 |
| 129 |
_RL tempmax, temprange, tempnorm,tempdecay |
| 130 |
_RL ngrowfac,ilight |
| 131 |
c |
| 132 |
INTEGER hollingtype |
| 133 |
INTEGER pft(npmax) |
| 134 |
INTEGER nsource(npmax) |
| 135 |
INTEGER ngroups |
| 136 |
INTEGER use_NO3(npmax) |
| 137 |
INTEGER use_Si(npmax) |
| 138 |
c |
| 139 |
c Power law intercepts and exponents, with errors |
| 140 |
c Note, while most errors are relative (times-divide), some are absolute (plus-minus) |
| 141 |
COMMON/quota_allometry/biovol,biovolmin,biovfactor, |
| 142 |
& a_vmaxi, b_vmaxi, |
| 143 |
& a_kn, b_kn, |
| 144 |
& a_qcarbon, b_qcarbon, |
| 145 |
& a_respir, b_respir, |
| 146 |
& a_qmin, b_qmin, |
| 147 |
& a_qmax, b_qmax, |
| 148 |
& a_alphachl, b_alphachl, |
| 149 |
& a_graz, b_graz, |
| 150 |
& a_kg, b_kg, |
| 151 |
& a_prdpry, b_prdpry, |
| 152 |
& a_kexc, b_kexc, |
| 153 |
& a_biosink, b_biosink, |
| 154 |
& a_bioswim, b_bioswim, |
| 155 |
& a_mort, b_mort, |
| 156 |
& a_beta_graz, b_beta_graz, |
| 157 |
& a_beta_mort, b_beta_mort, |
| 158 |
& ae_vmaxi, be_vmaxi, |
| 159 |
& ae_kn, be_kn, |
| 160 |
& ae_qcarbon, be_qcarbon, |
| 161 |
& ae_respir, be_respir, |
| 162 |
& ae_qmin, be_qmin, |
| 163 |
& ae_qmax, be_qmax, |
| 164 |
& ae_alphachl, be_alphachl, |
| 165 |
& ae_graz, be_graz, |
| 166 |
& ae_kg, be_kg, |
| 167 |
& ae_prdpry, be_prdpry, |
| 168 |
& ae_kexc, be_kexc, |
| 169 |
& ae_biosink, be_biosink, |
| 170 |
& ae_bioswim, be_bioswim, |
| 171 |
& ae_mort, be_mort, |
| 172 |
& ae_beta_graz,be_beta_graz, |
| 173 |
& ae_beta_mort,be_beta_mort |
| 174 |
|
| 175 |
_RL biovol(npmax),biovolmin,biovfactor |
| 176 |
_RL a_vmaxi(iimax) ,b_vmaxi(iimax) |
| 177 |
_RL a_kn(iimax) ,b_kn(iimax) |
| 178 |
_RL a_qcarbon ,b_qcarbon |
| 179 |
_RL a_respir ,b_respir |
| 180 |
_RL a_qmin(iomax) ,b_qmin(iomax) |
| 181 |
_RL a_qmax(iomax) ,b_qmax(iomax) |
| 182 |
_RL a_alphachl ,b_alphachl |
| 183 |
_RL a_graz ,b_graz |
| 184 |
_RL a_kg ,b_kg |
| 185 |
_RL a_prdpry ,b_prdpry |
| 186 |
_RL a_kexc(iomax) ,b_kexc(iomax) |
| 187 |
_RL a_biosink ,b_biosink |
| 188 |
_RL a_bioswim ,b_bioswim |
| 189 |
_RL a_mort ,b_mort |
| 190 |
_RL a_beta_graz(iomax-iChl) |
| 191 |
_RL b_beta_graz(iomax-iChl) |
| 192 |
_RL a_beta_mort(iomax-iChl) |
| 193 |
_RL b_beta_mort(iomax-iChl) |
| 194 |
_RL ae_vmaxi(iimax),be_vmaxi(iimax) |
| 195 |
_RL ae_kn(iimax) ,be_kn(iimax) |
| 196 |
_RL ae_qcarbon ,be_qcarbon |
| 197 |
_RL ae_respir ,be_respir |
| 198 |
_RL ae_qmin(iomax) ,be_qmin(iomax) |
| 199 |
_RL ae_qmax(iomax) ,be_qmax(iomax) |
| 200 |
_RL ae_alphachl ,be_alphachl |
| 201 |
_RL ae_graz ,be_graz |
| 202 |
_RL ae_kg ,be_kg |
| 203 |
_RL ae_prdpry ,be_prdpry |
| 204 |
_RL ae_kexc(iomax) ,be_kexc(iomax) |
| 205 |
_RL ae_biosink ,be_biosink |
| 206 |
_RL ae_bioswim ,be_bioswim |
| 207 |
_RL ae_mort ,be_mort |
| 208 |
_RL ae_beta_graz(iomax-iChl) |
| 209 |
_RL be_beta_graz(iomax-iChl) |
| 210 |
_RL ae_beta_mort(iomax-iChl) |
| 211 |
_RL be_beta_mort(iomax-iChl) |
| 212 |
|
| 213 |
c --------------------------------------------------------- |
| 214 |
c k0, kc - light coefficients |
| 215 |
COMMON/quota_lightparam/ k0, kc, parfrac, parconv |
| 216 |
_RL k0, kc, parfrac, parconv |
| 217 |
|
| 218 |
c chlpmax - chl:p max ratio |
| 219 |
c chlpmin - chl:p min ratio |
| 220 |
c istar - photoadaptation light limit |
| 221 |
c |
| 222 |
c --------------------------------------------------------- |
| 223 |
c |
| 224 |
COMMON/quota_chlparam/ chlpmax, chlpmin, istar |
| 225 |
_RL chlpmax, chlpmin, istar |
| 226 |
c |
| 227 |
c --------------------------------------------------------- |
| 228 |
c |
| 229 |
COMMON/quota_diags_param/ |
| 230 |
& diver_thresh0, diver_thresh1, |
| 231 |
& diver_thresh2, diver_thresh3, |
| 232 |
& diver_thresh4 |
| 233 |
|
| 234 |
_RL diver_thresh0, diver_thresh1 |
| 235 |
_RL diver_thresh2, diver_thresh3 |
| 236 |
_RL diver_thresh4 |
| 237 |
c |
| 238 |
c --------------------------------------------------------- |
| 239 |
c |
Parent Directory
| 
Revision Log
| 
Revision Graph