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benw |
1.3 |
C $Header: /u/gcmpack/MITgcm_contrib/darwin2/pkg/quota/QUOTA.h,v 1.2 2012/07/02 09:52:12 benw Exp $ |
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jahn |
1.1 |
C $Name: $ |
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c QUOTA.h |
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c description: Key parameter arrays for generalized ecosystem quota model |
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c Ben Ward, Summer/Autumn 2009 |
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c |
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c adapted from |
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c DARWIN.h |
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c description: Key parameter arrays for generalized ecosystem model |
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c Mick Follows, Scott Grant Fall/Winter 2005 |
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c Stephanie Dutkiewicz Spring/Summer 2006 |
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c |
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c iimax = no of modelled nutrient elements |
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c npmax = no of "functional groups" of plankton |
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c komax = no of "functional groups" of organic matter |
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c |
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c Parameter arrays |
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c NOTE: list not complete!! |
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c |
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c vmaxi(iimax,npmax) - maximum uptake rate for inorganic nutrients (and DIC) |
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c kn(iimax,npmax) - 1/2 saturation concentration for inorganic nutrient uptake |
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c biosynth - cost of biosynthesis |
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c amminhib - ammonium inhibition |
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c qcarbon(npmax) - Mean cell carbon content |
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c qmin(iomax,npmax) - minimum quota required to sustain growth |
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c qmax(iomax,npmax) - satiated quota (i.e. required for max growth rate) |
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c alphachl(npmax) - chl specific initial slope of PI curve |
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c chl2nmax - maximum cellular chl to nitrogen ratio |
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c pp_opt(npmax) - optimal prd_pry preference ratio |
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c pp_sig(npmax) - std.dev. of prd_pry preference ratio |
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c graz_pref(npmax,npmax) - size ratio based lognormal grazing preference matrix |
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c graz(npmax) - maximum grazing rate of predator |
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c kg(npmax) - 1/2 saturation prey biomass for grazing |
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c hollingtype - exponent of Holling grazing function |
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benw |
1.3 |
c ns - exponent of prey switching function |
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jahn |
1.1 |
c ass_eff - maximum assimilation efficiency |
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benw |
1.3 |
c hill - assimilation shape parameter |
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c Lambda - grazing refuge parameter |
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jahn |
1.1 |
c assim_graz(npmax,npmax) - assimilation efficiency of grazing |
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c beta_graz(iomax-iChl,npmax) - fraction of sloppy feeding to DOM |
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c kexc(iimax,npmax) - biomass specific excretion rate |
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c kmort(npmax) - plankton specific mortality rate |
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c beta_mort(iomax-iChl,npmax) - fraction of nortality to DOM |
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c respiration(npmax) - respiration rate |
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c |
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c biosink(npmax) - plankton sinking rate |
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benw |
1.3 |
c motility(npmax) - ability to avoid sinking |
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jahn |
1.1 |
c orgsink(iimax,komax) - organic matter sinking rate |
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c remin(iomax-iChl,komax) - organic matter remineralisation rate |
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c amm2nrite - ammonium to nitrite oxidation rate |
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c nrite2nrate - nitrite to nitrate oxidation rate |
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c k_w - light attenuation by water |
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c k_chl - light attenuation by chlorophyll |
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c |
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c use_NO3(npmax) - nitrate use on/off |
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c use_Si(npmax) - silicate use on/off |
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c autotrophy(npmax) - degree of autotrophy (1 = pure auto, 0 = pure hetero) |
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benw |
1.3 |
c pft(npmax) - phytoplankton functional type |
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jahn |
1.1 |
c 1=prochlorococcus, 2=synechococcus, 3=small eukaryotes, |
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c 4=diatoms, 5=dinoflagellates, 6=generic grazers |
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c |
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COMMON/quota_ecoparam/ |
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& vmaxi,kn, |
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& biosynth, |
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& amminhib, |
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& qcarbon, |
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& qmin,qmax, |
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& alphachl,chl2nmax, |
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& pp_opt,pp_sig,graz_pref, |
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& graz,kg, |
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benw |
1.3 |
& ass_eff,hill,Lambda, |
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& assim_graz,beta_graz, |
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jahn |
1.1 |
& kexc, |
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& kmort,beta_mort, |
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& respiration, |
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benw |
1.3 |
& biosink,orgsink,motility, |
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jahn |
1.1 |
& remin, |
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& autotrophy, |
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& pft, |
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& amm2nrite,nrite2nrate, |
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& k_w,k_chl, |
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& phytoTempCoeff, phytoTempExp1, |
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& phytoTempExp2, phytoTempOptimum, phytoDecayPower, |
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& tempcoeff1, tempcoeff2_small, |
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& tempcoeff2_big, tempcoeff3, |
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& tempmax, temprange, tempnorm, tempdecay, |
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& ngrowfac, ilight, |
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& PAR0, |
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benw |
1.2 |
#ifdef IRON_SED_SOURCE |
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& depthfesed,fesedflux,fesedflux_pcm, |
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#endif |
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#ifdef PART_SCAV |
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& scav_rat, scav_inter, scav_exp, |
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#endif |
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jahn |
1.1 |
& nsource,ngroups, |
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& use_NO3,use_Si, |
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benw |
1.3 |
& hollingtype,ns |
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jahn |
1.1 |
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_RL vmaxi(iimax,npmax) |
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_RL kn(iimax,npmax) |
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_RL biosynth |
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_RL amminhib |
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_RL qcarbon(npmax) |
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_RL qmin(iomax,npmax) |
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_RL qmax(iomax,npmax) |
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_RL alphachl(npmax) |
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_RL chl2nmax |
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_RL pp_opt(npmax),pp_sig(npmax) |
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_RL graz_pref(npmax,npmax) |
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_RL graz(npmax) |
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_RL kg(npmax) |
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benw |
1.3 |
_RL ass_eff,hill,Lambda |
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jahn |
1.1 |
_RL assim_graz(npmax,npmax) |
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_RL beta_graz(iomax-iChl,npmax) |
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_RL kexc(iimax,npmax) |
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_RL kmort(npmax) |
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_RL beta_mort(iomax-iChl,npmax) |
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_RL respiration(npmax) |
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_RL biosink(npmax) |
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benw |
1.3 |
_RL motility(npmax) |
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jahn |
1.1 |
_RL orgsink(komax) |
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_RL remin(iomax-iChl,komax) |
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c |
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_RL autotrophy(npmax) |
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c |
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_RL amm2nrite |
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_RL nrite2nrate |
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_RL PAR0 |
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_RL k_w |
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_RL k_chl |
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_RL phytoTempCoeff(npmax) |
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_RL phytoTempExp1(npmax) |
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_RL phytoTempExp2(npmax) |
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_RL phytoTempOptimum(npmax) |
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_RL phytoDecayPower(npmax) |
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_RL tempcoeff1, tempcoeff2_big |
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_RL tempcoeff2_small, tempcoeff3 |
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_RL tempmax, temprange, tempnorm,tempdecay |
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_RL ngrowfac,ilight |
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benw |
1.2 |
#ifdef IRON_SED_SOURCE |
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_RL depthfesed, fesedflux, fesedflux_pcm |
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#endif |
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#ifdef PART_SCAV |
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_RL scav_rat, scav_inter, scav_exp |
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#endif |
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jahn |
1.1 |
INTEGER hollingtype |
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benw |
1.3 |
INTEGER ns |
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jahn |
1.1 |
INTEGER pft(npmax) |
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INTEGER nsource(npmax) |
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INTEGER ngroups |
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INTEGER use_NO3(npmax) |
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INTEGER use_Si(npmax) |
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c |
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c Power law intercepts and exponents, with errors |
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c Note, while most errors are relative (times-divide), some are absolute (plus-minus) |
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COMMON/quota_allometry/biovol,biovolmin,biovfactor, |
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& a_vmaxi, b_vmaxi, |
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& a_kn, b_kn, |
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& a_qcarbon, b_qcarbon, |
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& a_respir, b_respir, |
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& a_qmin, b_qmin, |
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& a_qmax, b_qmax, |
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& a_alphachl, b_alphachl, |
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& a_graz, b_graz, |
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& a_kg, b_kg, |
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& a_prdpry, b_prdpry, |
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& a_kexc, b_kexc, |
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& a_biosink, b_biosink, |
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& a_mort, b_mort, |
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& a_beta_graz, b_beta_graz, |
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& a_beta_mort, b_beta_mort, |
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& ae_vmaxi, be_vmaxi, |
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& ae_kn, be_kn, |
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& ae_qcarbon, be_qcarbon, |
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& ae_respir, be_respir, |
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& ae_qmin, be_qmin, |
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& ae_qmax, be_qmax, |
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& ae_alphachl, be_alphachl, |
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& ae_graz, be_graz, |
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& ae_kg, be_kg, |
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& ae_prdpry, be_prdpry, |
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& ae_kexc, be_kexc, |
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& ae_biosink, be_biosink, |
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& ae_mort, be_mort, |
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& ae_beta_graz,be_beta_graz, |
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& ae_beta_mort,be_beta_mort |
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_RL biovol(npmax),biovolmin,biovfactor |
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_RL a_vmaxi(iimax) ,b_vmaxi(iimax) |
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_RL a_kn(iimax) ,b_kn(iimax) |
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_RL a_qcarbon ,b_qcarbon |
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_RL a_respir ,b_respir |
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_RL a_qmin(iomax) ,b_qmin(iomax) |
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_RL a_qmax(iomax) ,b_qmax(iomax) |
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_RL a_alphachl ,b_alphachl |
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_RL a_graz ,b_graz |
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_RL a_kg ,b_kg |
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_RL a_prdpry ,b_prdpry |
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_RL a_kexc(iomax) ,b_kexc(iomax) |
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_RL a_biosink ,b_biosink |
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_RL a_mort ,b_mort |
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_RL a_beta_graz(iomax-iChl) |
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_RL b_beta_graz(iomax-iChl) |
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_RL a_beta_mort(iomax-iChl) |
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_RL b_beta_mort(iomax-iChl) |
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_RL ae_vmaxi(iimax),be_vmaxi(iimax) |
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_RL ae_kn(iimax) ,be_kn(iimax) |
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_RL ae_qcarbon ,be_qcarbon |
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_RL ae_respir ,be_respir |
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_RL ae_qmin(iomax) ,be_qmin(iomax) |
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_RL ae_qmax(iomax) ,be_qmax(iomax) |
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_RL ae_alphachl ,be_alphachl |
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_RL ae_graz ,be_graz |
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_RL ae_kg ,be_kg |
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_RL ae_prdpry ,be_prdpry |
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_RL ae_kexc(iomax) ,be_kexc(iomax) |
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_RL ae_biosink ,be_biosink |
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_RL ae_mort ,be_mort |
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_RL ae_beta_graz(iomax-iChl) |
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_RL be_beta_graz(iomax-iChl) |
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_RL ae_beta_mort(iomax-iChl) |
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_RL be_beta_mort(iomax-iChl) |
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c --------------------------------------------------------- |
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c k0, kc - light coefficients |
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COMMON/quota_lightparam/ k0, kc, parfrac, parconv |
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_RL k0, kc, parfrac, parconv |
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c chlpmax - chl:p max ratio |
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c chlpmin - chl:p min ratio |
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c istar - photoadaptation light limit |
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c |
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c --------------------------------------------------------- |
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c |
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COMMON/quota_chlparam/ chlpmax, chlpmin, istar |
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_RL chlpmax, chlpmin, istar |
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c |
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c --------------------------------------------------------- |
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c |
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COMMON/quota_diags_param/ |
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& diver_thresh0, diver_thresh1, |
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& diver_thresh2, diver_thresh3, |
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& diver_thresh4 |
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_RL diver_thresh0, diver_thresh1 |
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_RL diver_thresh2, diver_thresh3 |
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_RL diver_thresh4 |
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c |
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c --------------------------------------------------------- |
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c |
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