/[MITgcm]/MITgcm_contrib/darwin2/pkg/monod/monod_init_vari.F
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revision 1.5 by jahn, Mon Jul 30 15:21:51 2012 UTC revision 1.12 by jahn, Fri Jun 21 12:49:47 2013 UTC
# Line 106  c initialize total number of functional Line 106  c initialize total number of functional
106    
107  c reduce amount of diaz  c reduce amount of diaz
108  #ifdef ALLOW_DIAZ  #ifdef ALLOW_DIAZ
109           IF (nIter0.EQ.PTRACERS_Iter0) THEN
110          do np = 1, npmax          do np = 1, npmax
111           if (diazotroph(np) .eq. 1. _d 0) then           if (diazotroph(np) .eq. 1. _d 0) then
112           DO bj = myByLo(myThid), myByHi(myThid)           DO bj = myByLo(myThid), myByHi(myThid)
# Line 122  c reduce amount of diaz Line 123  c reduce amount of diaz
123           ENDDO           ENDDO
124           endif           endif
125          enddo          enddo
126           ENDIF
127  #endif  #endif
128    
129          _BEGIN_MASTER( myThid )          _BEGIN_MASTER( myThid )
# Line 189  c  no temp/nutrient limitation Line 191  c  no temp/nutrient limitation
191  #endif  #endif
192          _END_MASTER( myThid )          _END_MASTER( myThid )
193    
194  #ifdef DYNAMIC_CHL  #ifdef GEIDER
195  C this initializes fields...  C this initializes fields...
196          call MONOD_CHECK_CHL(myThid)          call MONOD_CHECK_CHL(myThid)
197  #endif  #endif
# Line 323  c       myProcId and myThid Line 325  c       myProcId and myThid
325          ENDDO          ENDDO
326         ENDDO         ENDDO
327        ENDDO        ENDDO
328    #endif
329    
330        IF ( .NOT. ( startTime .EQ. baseTime .AND.  nIter0 .EQ. 0        IF ( .NOT. ( startTime .EQ. baseTime .AND.  nIter0 .EQ. 0
331       &     .AND. pickupSuff .EQ. ' ') ) THEN       &     .AND. pickupSuff .EQ. ' ') ) THEN
332  COJ should probably initialize from a file when nIter0 .EQ. 0  COJ should probably initialize from a file when nIter0 .EQ. 0
333          CALL DARWIN_READ_PICKUP( nIter0, myThid )          CALL DARWIN_READ_PICKUP( nIter0, myThid )
334        ENDIF        ENDIF
 #endif  
335  c  c
336  #ifdef ALLOW_TIMEAVE  #ifdef ALLOW_TIMEAVE
337  c set arrays to zero if first timestep  c set arrays to zero if first timestep
# Line 339  c set arrays to zero if first timestep Line 342  c set arrays to zero if first timestep
342            CALL TIMEAVE_RESET(Chlave,   Nr,  bi, bj, myThid)            CALL TIMEAVE_RESET(Chlave,   Nr,  bi, bj, myThid)
343            CALL TIMEAVE_RESET(Nfixave,   Nr,  bi, bj, myThid)            CALL TIMEAVE_RESET(Nfixave,   Nr,  bi, bj, myThid)
344            CALL TIMEAVE_RESET(Denitave,   Nr,  bi, bj, myThid)            CALL TIMEAVE_RESET(Denitave,   Nr,  bi, bj, myThid)
345    #ifdef DAR_DIAG_PARW
346              do i=1,tlam
347               CALL TIMEAVE_RESET(PARwave(1-OLx,1-OLy,1,1,1,i),
348         &                                    Nr,bi,bj,myThid)
349              enddo
350              do np=1,npmax
351               CALL TIMEAVE_RESET(chl2cave(1-OLx,1-OLy,1,1,1,np),
352         &                                    Nr,bi,bj,myThid)
353              enddo
354    #endif
355  #ifdef DAR_DIAG_ACDOM  #ifdef DAR_DIAG_ACDOM
356            CALL TIMEAVE_RESET(aCDOMave,   Nr,  bi, bj, myThid)            CALL TIMEAVE_RESET(aCDOMave,   Nr,  bi, bj, myThid)
357  #endif  #endif
# Line 350  c set arrays to zero if first timestep Line 363  c set arrays to zero if first timestep
363       &                                    Nr,bi,bj,myThid)       &                                    Nr,bi,bj,myThid)
364             CALL TIMEAVE_RESET(Euave(1-OLx,1-OLy,1,1,1,i),             CALL TIMEAVE_RESET(Euave(1-OLx,1-OLy,1,1,1,i),
365       &                                    Nr,bi,bj,myThid)       &                                    Nr,bi,bj,myThid)
366               CALL TIMEAVE_RESET(Estave(1-OLx,1-OLy,1,1,1,i),
367         &                                    Nr,bi,bj,myThid)
368             CALL TIMEAVE_RESET(Eutave(1-OLx,1-OLy,1,1,1,i),             CALL TIMEAVE_RESET(Eutave(1-OLx,1-OLy,1,1,1,i),
369       &                                    Nr,bi,bj,myThid)       &                                    Nr,bi,bj,myThid)
370            enddo            enddo
371  #endif  #endif
372  #ifdef DAR_DIAG_IRR_AMPS  #ifdef DAR_DIAG_IRR_AMPS
373            do i=1,tlam            do i=1,tlam
374             CALL TIMEAVE_RESET(c1ave(1-OLx,1-OLy,1,1,1,i),             CALL TIMEAVE_RESET(amp1ave(1-OLx,1-OLy,1,1,1,i),
375       &                                    Nr,bi,bj,myThid)       &                                    Nr,bi,bj,myThid)
376             CALL TIMEAVE_RESET(c2ave(1-OLx,1-OLy,1,1,1,i),             CALL TIMEAVE_RESET(amp2ave(1-OLx,1-OLy,1,1,1,i),
377       &                                    Nr,bi,bj,myThid)       &                                    Nr,bi,bj,myThid)
378            enddo            enddo
379  #endif  #endif
# Line 398  c ANNA_TAVE Line 413  c ANNA_TAVE
413            enddo            enddo
414  #endif  #endif
415  c ANNA end TAVE  c ANNA end TAVE
416    #ifdef DAR_DIAG_EK
417               do np=1,npmax
418               CALL TIMEAVE_RESET(Ekave(1-OLx,1-OLy,1,1,1,np),
419         &                                      Nr,bi,bj,myThid)
420               CALL TIMEAVE_RESET(EkoverEave(1-OLx,1-OLy,1,1,1,np),
421         &                                      Nr,bi,bj,myThid)
422               do i=1,tlam
423                 CALL TIMEAVE_RESET(Ek_nlave(1-OLx,1-OLy,1,1,1,np,i),
424         &                                      Nr,bi,bj,myThid)
425                 CALL TIMEAVE_RESET(EkoverE_nlave(1-OLx,1-OLy,1,1,1,np,i),
426         &                                      Nr,bi,bj,myThid)
427               enddo
428              enddo
429    #endif
430  #ifdef DAR_DIAG_RSTAR  #ifdef DAR_DIAG_RSTAR
431            do np=1,npmax            do np=1,npmax
432             CALL TIMEAVE_RESET(Rstarave(1-OLx,1-OLy,1,1,1,np),             CALL TIMEAVE_RESET(Rstarave(1-OLx,1-OLy,1,1,1,np),
# Line 436  c         CALL TIMEAVE_RESET(SURave,   1 Line 465  c         CALL TIMEAVE_RESET(SURave,   1
465  #ifdef CHECK_CONS  #ifdef CHECK_CONS
466         IF ( myProcId.EQ.0 .AND. myThid.EQ.1 ) THEN         IF ( myProcId.EQ.0 .AND. myThid.EQ.1 ) THEN
467  coj find unused units for darwin_cons output  coj find unused units for darwin_cons output
468          CALL MDSFINDUNIT( DAR_cons_unit1, mythid )          CALL MDSFINDUNIT( DAR_cons_unitP, mythid )
469          open(DAR_cons_unit1,file='darwin_cons_P.txt',status='unknown')          open(DAR_cons_unitP,file='darwin_cons_P.txt',status='unknown')
470          CALL MDSFINDUNIT( DAR_cons_unit2, mythid )          CALL MDSFINDUNIT( DAR_cons_unitN, mythid )
471          open(DAR_cons_unit2,file='darwin_cons_N.txt',status='unknown')          open(DAR_cons_unitN,file='darwin_cons_N.txt',status='unknown')
472          CALL MDSFINDUNIT( DAR_cons_unit3, mythid )          CALL MDSFINDUNIT( DAR_cons_unitF, mythid )
473          open(DAR_cons_unit3,file='darwin_cons_Fe.txt',status='unknown')          open(DAR_cons_unitF,file='darwin_cons_Fe.txt',status='unknown')
474          CALL MDSFINDUNIT( DAR_cons_unit4, mythid )          CALL MDSFINDUNIT( DAR_cons_unitS, mythid )
475          open(DAR_cons_unit4,file='darwin_cons_Si.txt',status='unknown')          open(DAR_cons_unitS,file='darwin_cons_Si.txt',status='unknown')
476  #ifdef ALLOW_CARBON  #ifdef ALLOW_CARBON
477          CALL MDSFINDUNIT( DAR_cons_unit5, mythid )          CALL MDSFINDUNIT( DAR_cons_unitC, mythid )
478          open(DAR_cons_unit5,file='darwin_cons_C.txt',status='unknown')          open(DAR_cons_unitC,file='darwin_cons_C.txt',status='unknown')
479          CALL MDSFINDUNIT( DAR_cons_unit6, mythid )          CALL MDSFINDUNIT( DAR_cons_unitA, mythid )
480          open(DAR_cons_unit6,file='darwin_cons_A.txt',status='unknown')          open(DAR_cons_unitA,file='darwin_cons_A.txt',status='unknown')
481          CALL MDSFINDUNIT( DAR_cons_unit7, mythid )          CALL MDSFINDUNIT( DAR_cons_unitO, mythid )
482          open(DAR_cons_unit7,file='darwin_cons_O.txt',status='unknown')          open(DAR_cons_unitO,file='darwin_cons_O.txt',status='unknown')
483  #endif  #endif
484  c      myProcId and myThid  c      myProcId and myThid
485         ENDIF         ENDIF
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