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jahn |
1.4 |
C $Header: /u/gcmpack/MITgcm_contrib/darwin2/pkg/monod/monod_init_vari.F,v 1.3 2011/09/22 16:01:30 jahn Exp $ |
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stephd |
1.2 |
C $Name: $ |
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jahn |
1.1 |
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#include "CPP_OPTIONS.h" |
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#include "DARWIN_OPTIONS.h" |
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#ifdef ALLOW_PTRACERS |
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#ifdef ALLOW_MONOD |
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c ========================================================== |
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c SUBROUTINE MONOD_INIT_VARI() |
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c initialize stuff for generalized plankton model |
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c adapted from NPZD2Fe - Mick Follows, Fall 2005 |
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c modified - Stephanie Dutkiewicz, Spring 2006 |
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c ========================================================== |
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c |
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SUBROUTINE MONOD_INIT_VARI(myThid) |
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IMPLICIT NONE |
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#include "SIZE.h" |
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#include "GRID.h" |
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#include "DYNVARS.h" |
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#include "EEPARAMS.h" |
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#include "PARAMS.h" |
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#include "MONOD_SIZE.h" |
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#include "MONOD.h" |
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#include "DARWIN_IO.h" |
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c ANNA define params for WAVEBANDS |
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#ifdef WAVEBANDS |
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#include "SPECTRAL_SIZE.h" |
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#include "SPECTRAL.h" |
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#include "WAVEBANDS_PARAMS.h" |
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#endif |
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#ifdef ALLOW_DIAZ |
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#include "PTRACERS_SIZE.h" |
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#include "PTRACERS_PARAMS.h" |
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#include "PTRACERS_FIELDS.h" |
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#endif |
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C !INPUT PARAMETERS: =================================================== |
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C myThid :: thread number |
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INTEGER myThid |
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C === Functions === |
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_RL DARWIN_RANDOM |
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EXTERNAL DARWIN_RANDOM |
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C !LOCAL VARIABLES: |
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C === Local variables === |
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C msgBuf - Informational/error meesage buffer |
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CHARACTER*(MAX_LEN_MBUF) msgBuf |
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INTEGER IniUnit1, IniUnit2 |
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INTEGER bi, bj, k, i, j, iPAR |
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INTEGER np |
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INTEGER nz |
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c ANNA need nl for wavebands |
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#ifdef WAVEBANDS |
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integer ilam |
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integer nl |
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_RL cu_area |
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#endif |
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CEOP |
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WRITE(msgBuf,'(A)') |
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& '// =======================================================' |
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CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
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& SQUEEZE_RIGHT, myThid ) |
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WRITE(msgBuf,'(A)') '// Darwin init variables >>> START <<<' |
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CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
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& SQUEEZE_RIGHT, myThid ) |
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WRITE(msgBuf,'(A)') |
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& '// =======================================================' |
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CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
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& SQUEEZE_RIGHT, myThid ) |
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c test.................... |
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c write(6,*)'testing in npzd2fe_init_vari ' |
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c test.................... |
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c set up ecosystem coefficients |
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c |
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c seed randomization |
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jahn |
1.4 |
_BEGIN_MASTER( myThid ) |
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jahn |
1.1 |
CALL DARWIN_RANDOM_INIT(darwin_seed, myThid) |
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c initialize total number of functional groups tried |
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ngroups = 0 |
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do np = 1, npmax |
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#ifdef ALLOW_MUTANTS |
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call MONOD_GENERATE_MUTANTS(MyThid, np) |
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#else |
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call MONOD_GENERATE_PHYTO(MyThid, np) |
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#endif |
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end do |
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jahn |
1.4 |
_END_MASTER( myThid ) |
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jahn |
1.1 |
c reduce amount of diaz |
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#ifdef ALLOW_DIAZ |
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do np = 1, npmax |
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if (diazotroph(np) .eq. 1. _d 0) then |
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DO bj = myByLo(myThid), myByHi(myThid) |
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DO bi = myBxLo(myThid), myBxHi(myThid) |
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DO j=1-Oly,sNy+Oly |
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DO i=1-Olx,sNx+Olx |
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DO k=1,nR |
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Ptracer(i,j,k,bi,bj,iPhy+np-1) = |
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& Ptracer(i,j,k,bi,bj,iPhy+np-1)/10. _d 0 |
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ENDDO |
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ENDDO |
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ENDDO |
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ENDDO |
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ENDDO |
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endif |
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enddo |
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#endif |
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jahn |
1.4 |
_BEGIN_MASTER( myThid ) |
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jahn |
1.1 |
c initialize zooplankton |
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call MONOD_GENERATE_ZOO(MyThid) |
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c %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
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c ANNA call WAVEBANDS_INIT_VARI to assign variable parameters |
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#ifdef WAVEBANDS |
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call WAVEBANDS_INIT_VARI(MyThid) |
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#endif |
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c ANNA get alphachl from mQyield / aphy_chl |
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c ANNA must do this after params are assigned, but before written out |
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c ANNA use aphy_chl_ps for growth. To turn off, simply set same coefs as aphy_chl in input files. |
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#ifdef GEIDER |
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#ifndef WAVEBANDS |
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do np = 1,npmax |
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alphachl(np) = mQyield(np) * aphy_chl_ave |
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c C:CHl minimum: chosen to be Chl:C at high light (2000uEin/m2/s) and |
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c no temp/nutrient limitation |
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c chl2cmin(np)=chl2cmax(np)/ |
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c & (1+(chl2cmax(np)*alphachl(np)*2000. _d 0)/ |
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c & (2*pcmax(np))) |
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chl2cmin(np)=0. _d 0 |
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enddo |
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#else |
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do np = 1,npmax |
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do nl = 1,tlam |
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alphachl_nl(np,nl) = mQyield(np) * aphy_chl_ps(np,nl) |
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end do |
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c find mean |
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cu_area = 0.d0 |
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do nl = 1,tlam |
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cu_area = cu_area + wb_width(nl)*alphachl_nl(np,nl) |
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end do |
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alpha_mean(np) = cu_area / wb_totalWidth |
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chl2cmin(np)=chl2cmax(np)/ |
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& (1+(chl2cmax(np)* alpha_mean(np) *2000. _d 0)/ |
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& (2*pcmax(np))) |
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end do |
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#endif |
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#ifdef DYNAMIC_CHL |
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c check Chl fields are reasonable |
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stephd |
1.2 |
#ifndef WAVEBANDS |
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do np = 1,npmax |
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c C:CHl minimum: chosen to be Chl:C at high light (2000uEin/m2/s) and |
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c no temp/nutrient limitation |
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chl2cmin(np)=chl2cmax(np)/ |
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& (1+(chl2cmax(np)*alphachl(np)*2000. _d 0)/ |
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& (2*pcmax(np))) |
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chl2cmin(np)=0. _d 0 |
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enddo |
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#else |
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jahn |
1.1 |
do np=1,npmax |
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chl2cmin(np)=chl2cmax(np)/ |
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& (1+(chl2cmax(np)* alpha_mean(np) *2000. _d 0)/ |
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& (2*pcmax(np))) |
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enddo |
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stephd |
1.2 |
#endif |
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jahn |
1.1 |
#endif |
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#endif |
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jahn |
1.4 |
_END_MASTER( myThid ) |
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#ifdef DYNAMIC_CHL |
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C this initializes fields... |
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call MONOD_CHECK_CHL(myThid) |
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#endif |
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jahn |
1.1 |
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jahn |
1.3 |
IF ( myProcId.EQ.0 .AND. myThid.EQ.1 ) THEN |
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jahn |
1.1 |
c write out initial phyto characteristics |
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#ifndef GEIDER |
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CALL MDSFINDUNIT( IniUnit1, mythid ) |
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open(IniUnit1,file='plankton-ini-char.dat',status='unknown') |
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CALL MDSFINDUNIT( IniUnit2, mythid ) |
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open(IniUnit2,file='plankton_ini_char_nohead.dat', |
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& status='unknown') |
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#ifdef OLD_GRAZE |
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write(IniUnit1,*)'dico diaz size mu mort Rnp Rfep Rsip |
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& wsink KsP KsN KsFe KsSi g1 g2 Kpar Kinh |
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& Topt nsrc np' |
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do np = 1, npmax |
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write(IniUnit1,110)diacoc(np),diazotroph(np),physize(np), |
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& 1.0/(mu(np)*86400.), 1.0/(mortphy(np)*86400.), |
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& R_NP(np),R_FeP(np)*1000.,R_SiP(np), |
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& wsink(np), |
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& KsatPO4(np),KsatNO3(np),KsatFeT(np)*1000. |
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& ,KsatSi(np), |
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& graze(np,1),graze(np,2), |
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& KsatPAR(np),Kinhib(np), |
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& phytoTempOptimum(np),nsource(np),np |
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write(IniUnit2,110)diacoc(np),diazotroph(np),physize(np), |
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& 1.0/(mu(np)*86400.),1.0/(mortphy(np)*86400.), |
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& R_NP(np),R_FeP(np)*1000.,R_SiP(np), |
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& wsink(np), |
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& KsatPO4(np),KsatNO3(np),KsatFeT(np)*1000. |
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& ,KsatSi(np), |
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& graze(np,1),graze(np,2), |
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& KsatPAR(np),Kinhib(np), |
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& phytoTempOptimum(np),nsource(np),np |
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end do |
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#else |
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write(IniUnit1,*)'dico diaz size mu mort Rnp Rfep Rsip wsink |
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& KsP KsN KsFe KsSi palat1 palat2 Kpar Kinh Topt nsrc |
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& np' |
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do np = 1, npmax |
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write(IniUnit1,111)diacoc(np),diazotroph(np),physize(np), |
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& 1.0/(mu(np)*86400.), 1.0/(mortphy(np)*86400.), |
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& R_NP(np),R_FeP(np)*1000.,R_SiP(np), |
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& wsink(np), |
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& KsatPO4(np),KsatNO3(np),KsatFeT(np)*1000. |
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& ,KsatSi(np), |
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& palat(np,1),palat(np,2), |
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& KsatPAR(np),Kinhib(np), |
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& phytoTempOptimum(np),nsource(np),np |
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write(IniUnit2,111)diacoc(np),diazotroph(np),physize(np), |
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& 1.0/(mu(np)*86400.),1.0/(mortphy(np)*86400.), |
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& R_NP(np),R_FeP(np)*1000.,R_SiP(np), |
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& wsink(np), |
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& KsatPO4(np),KsatNO3(np),KsatFeT(np)*1000. |
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& ,KsatSi(np), |
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& palat(np,1),palat(np,2), |
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& KsatPAR(np),Kinhib(np), |
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& phytoTempOptimum(np),nsource(np),np |
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end do |
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#endif |
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#endif |
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#ifdef GEIDER |
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c ANNA outputs mQyield as 10^(4) mmol C (uEin)-1 |
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CALL MDSFINDUNIT( IniUnit1, mythid ) |
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open(IniUnit1,file='gplankton-ini-char.dat',status='unknown') |
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CALL MDSFINDUNIT( IniUnit2, mythid ) |
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open(IniUnit2,file='gplankton_ini_char_nohead.dat', |
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& status='unknown') |
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write(IniUnit1,*)'dico diaz size pcmax mort Rnp Rfep Rsip wsink |
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& KsP KsN KsFe KsSi palat1 palat2 mQY(-4) chl2c Topt nsrc |
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& np' |
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do np = 1, npmax |
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write(IniUnit1,111)diacoc(np),diazotroph(np),physize(np), |
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& 1.0/(pcmax(np)*86400.), 1.0/(mortphy(np)*86400.), |
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& R_NP(np),R_FeP(np)*1000.,R_SiP(np), |
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& wsink(np), |
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& KsatPO4(np),KsatNO3(np),KsatFeT(np)*1000. |
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& ,KsatSi(np), |
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& palat(np,1),palat(np,2), |
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& mQyield(np)*1e4,chl2cmax(np), |
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& phytoTempOptimum(np),nsource(np),np |
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write(IniUnit2,111)diacoc(np),diazotroph(np),physize(np), |
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& 1.0/(pcmax(np)*86400.), 1.0/(mortphy(np)*86400.), |
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& R_NP(np),R_FeP(np)*1000.,R_SiP(np), |
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& wsink(np), |
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& KsatPO4(np),KsatNO3(np),KsatFeT(np)*1000. |
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& ,KsatSi(np), |
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& palat(np,1),palat(np,2), |
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& mQyield(np)*1e4,chl2cmax(np), |
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& phytoTempOptimum(np),nsource(np),np |
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end do |
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#endif |
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close(IniUnit2) |
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close(IniUnit1) |
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110 format(3f4.0,f6.2,4f4.0,f5.1,4f7.3,2e11.2,2f9.4,f6.1,2i5) |
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111 format(3f4.0,f6.2,4f4.0,f5.1,4f7.3,2f6.1,2f9.4,f6.1,2i5) |
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jahn |
1.3 |
c myProcId and myThid |
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ENDIF |
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jahn |
1.1 |
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| 295 |
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CALL LEF_ZERO( fice,myThid ) |
| 296 |
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CALL LEF_ZERO( inputFe,myThid ) |
| 297 |
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CALL LEF_ZERO( sur_par,myThid ) |
| 298 |
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#ifdef NUT_SUPPLY |
| 299 |
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DO bj = myByLo(myThid), myByHi(myThid) |
| 300 |
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DO bi = myBxLo(myThid), myBxHi(myThid) |
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DO j=1-Oly,sNy+Oly |
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DO i=1-Olx,sNx+Olx |
| 303 |
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DO k=1,nR |
| 304 |
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nut_wvel(i,j,k,bi,bj) = 0. _d 0 |
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ENDDO |
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ENDDO |
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ENDDO |
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ENDDO |
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ENDDO |
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#endif |
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#ifdef ALLOW_PAR_DAY |
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DO iPAR=1,2 |
| 314 |
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DO bj=myByLo(myThid), myByHi(myThid) |
| 315 |
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DO bi=myBxLo(myThid), myBxHi(myThid) |
| 316 |
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DO k=1,nR |
| 317 |
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DO j=1-Oly,sNy+Oly |
| 318 |
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DO i=1-Olx,sNx+Olx |
| 319 |
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PARday(i,j,k,bi,bj,iPAR) = 0. _d 0 |
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ENDDO |
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ENDDO |
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ENDDO |
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ENDDO |
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ENDDO |
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ENDDO |
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IF ( .NOT. ( startTime .EQ. baseTime .AND. nIter0 .EQ. 0 |
| 327 |
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& .AND. pickupSuff .EQ. ' ') ) THEN |
| 328 |
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COJ should probably initialize from a file when nIter0 .EQ. 0 |
| 329 |
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CALL DARWIN_READ_PICKUP( nIter0, myThid ) |
| 330 |
|
|
ENDIF |
| 331 |
|
|
#endif |
| 332 |
|
|
c |
| 333 |
|
|
#ifdef ALLOW_TIMEAVE |
| 334 |
|
|
c set arrays to zero if first timestep |
| 335 |
|
|
DO bj = myByLo(myThid), myByHi(myThid) |
| 336 |
|
|
DO bi = myBxLo(myThid), myBxHi(myThid) |
| 337 |
|
|
CALL TIMEAVE_RESET(PARave, Nr, bi, bj, myThid) |
| 338 |
|
|
CALL TIMEAVE_RESET(PPave, Nr, bi, bj, myThid) |
| 339 |
|
|
CALL TIMEAVE_RESET(Chlave, Nr, bi, bj, myThid) |
| 340 |
|
|
CALL TIMEAVE_RESET(Nfixave, Nr, bi, bj, myThid) |
| 341 |
|
|
CALL TIMEAVE_RESET(Denitave, Nr, bi, bj, myThid) |
| 342 |
|
|
#ifdef DAR_DIAG_ACDOM |
| 343 |
|
|
CALL TIMEAVE_RESET(aCDOMave, Nr, bi, bj, myThid) |
| 344 |
|
|
#endif |
| 345 |
|
|
#ifdef DAR_DIAG_IRR |
| 346 |
|
|
do i=1,tlam |
| 347 |
|
|
CALL TIMEAVE_RESET(Edave(1-OLx,1-OLy,1,1,1,i), |
| 348 |
|
|
& Nr,bi,bj,myThid) |
| 349 |
|
|
CALL TIMEAVE_RESET(Esave(1-OLx,1-OLy,1,1,1,i), |
| 350 |
|
|
& Nr,bi,bj,myThid) |
| 351 |
|
|
CALL TIMEAVE_RESET(Euave(1-OLx,1-OLy,1,1,1,i), |
| 352 |
|
|
& Nr,bi,bj,myThid) |
| 353 |
|
|
CALL TIMEAVE_RESET(Eutave(1-OLx,1-OLy,1,1,1,i), |
| 354 |
|
|
& Nr,bi,bj,myThid) |
| 355 |
|
|
enddo |
| 356 |
|
|
#endif |
| 357 |
|
|
#ifdef DAR_DIAG_ABSORP |
| 358 |
|
|
do i=1,tlam |
| 359 |
|
|
CALL TIMEAVE_RESET(aave(1-OLx,1-OLy,1,1,1,i), |
| 360 |
|
|
& Nr,bi,bj,myThid) |
| 361 |
|
|
enddo |
| 362 |
|
|
#endif |
| 363 |
|
|
#ifdef DAR_DIAG_SCATTER |
| 364 |
|
|
do i=1,tlam |
| 365 |
|
|
CALL TIMEAVE_RESET(btave(1-OLx,1-OLy,1,1,1,i), |
| 366 |
|
|
& Nr,bi,bj,myThid) |
| 367 |
|
|
CALL TIMEAVE_RESET(bbave(1-OLx,1-OLy,1,1,1,i), |
| 368 |
|
|
& Nr,bi,bj,myThid) |
| 369 |
|
|
enddo |
| 370 |
|
|
#endif |
| 371 |
|
|
#ifdef DAR_DIAG_PART_SCATTER |
| 372 |
|
|
do i=1,tlam |
| 373 |
|
|
CALL TIMEAVE_RESET(apartave(1-OLx,1-OLy,1,1,1,i), |
| 374 |
|
|
& Nr,bi,bj,myThid) |
| 375 |
|
|
CALL TIMEAVE_RESET(btpartave(1-OLx,1-OLy,1,1,1,i), |
| 376 |
|
|
& Nr,bi,bj,myThid) |
| 377 |
|
|
CALL TIMEAVE_RESET(bbpartave(1-OLx,1-OLy,1,1,1,i), |
| 378 |
|
|
& Nr,bi,bj,myThid) |
| 379 |
|
|
enddo |
| 380 |
|
|
#endif |
| 381 |
|
|
c ANNA_TAVE |
| 382 |
|
|
#ifdef WAVES_DIAG_PCHL |
| 383 |
|
|
do np=1,npmax |
| 384 |
|
|
CALL TIMEAVE_RESET(Pchlave(1-OLx,1-OLy,1,1,1,np), |
| 385 |
|
|
& Nr,bi,bj,myThid) |
| 386 |
|
|
enddo |
| 387 |
|
|
#endif |
| 388 |
|
|
c ANNA end TAVE |
| 389 |
|
|
#ifdef DAR_DIAG_RSTAR |
| 390 |
|
|
do np=1,npmax |
| 391 |
|
|
CALL TIMEAVE_RESET(Rstarave(1-OLx,1-OLy,1,1,1,np), |
| 392 |
|
|
& Nr,bi,bj,myThid) |
| 393 |
|
|
CALL TIMEAVE_RESET(RNstarave(1-OLx,1-OLy,1,1,1,np), |
| 394 |
|
|
& Nr,bi,bj,myThid) |
| 395 |
|
|
enddo |
| 396 |
|
|
#endif |
| 397 |
|
|
#ifdef DAR_DIAG_DIVER |
| 398 |
|
|
CALL TIMEAVE_RESET(Diver1ave, Nr, bi, bj, myThid) |
| 399 |
|
|
CALL TIMEAVE_RESET(Diver2ave, Nr, bi, bj, myThid) |
| 400 |
|
|
CALL TIMEAVE_RESET(Diver3ave, Nr, bi, bj, myThid) |
| 401 |
|
|
CALL TIMEAVE_RESET(Diver4ave, Nr, bi, bj, myThid) |
| 402 |
|
|
#endif |
| 403 |
|
|
#ifdef ALLOW_DIAZ |
| 404 |
|
|
#ifdef DAR_DIAG_NFIXP |
| 405 |
|
|
do np=1,npmax |
| 406 |
|
|
CALL TIMEAVE_RESET(NfixPave(1-OLx,1-OLy,1,1,1,np), |
| 407 |
|
|
& Nr,bi,bj,myThid) |
| 408 |
|
|
enddo |
| 409 |
|
|
#endif |
| 410 |
|
|
#endif |
| 411 |
|
|
c CALL TIMEAVE_RESET(SURave, 1, bi, bj, myThid) |
| 412 |
|
|
WRITE(msgbuf,'(A)') |
| 413 |
|
|
& 'QQ start timeave' |
| 414 |
|
|
CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
| 415 |
|
|
& SQUEEZE_RIGHT , mythid) |
| 416 |
|
|
|
| 417 |
|
|
do k=1,Nr |
| 418 |
|
|
DAR_TimeAve(bi,bj,k)=0. _d 0 |
| 419 |
|
|
enddo |
| 420 |
|
|
ENDDO |
| 421 |
|
|
ENDDO |
| 422 |
|
|
#endif /* ALLOW_TIMEAVE */ |
| 423 |
|
|
|
| 424 |
|
|
#ifdef CHECK_CONS |
| 425 |
jahn |
1.3 |
IF ( myProcId.EQ.0 .AND. myThid.EQ.1 ) THEN |
| 426 |
jahn |
1.1 |
coj find unused units for darwin_cons output |
| 427 |
|
|
CALL MDSFINDUNIT( DAR_cons_unit1, mythid ) |
| 428 |
|
|
open(DAR_cons_unit1,file='darwin_cons_P.txt',status='unknown') |
| 429 |
|
|
CALL MDSFINDUNIT( DAR_cons_unit2, mythid ) |
| 430 |
|
|
open(DAR_cons_unit2,file='darwin_cons_N.txt',status='unknown') |
| 431 |
|
|
CALL MDSFINDUNIT( DAR_cons_unit3, mythid ) |
| 432 |
|
|
open(DAR_cons_unit3,file='darwin_cons_Fe.txt',status='unknown') |
| 433 |
|
|
CALL MDSFINDUNIT( DAR_cons_unit4, mythid ) |
| 434 |
|
|
open(DAR_cons_unit4,file='darwin_cons_Si.txt',status='unknown') |
| 435 |
|
|
#ifdef ALLOW_CARBON |
| 436 |
|
|
CALL MDSFINDUNIT( DAR_cons_unit5, mythid ) |
| 437 |
|
|
open(DAR_cons_unit5,file='darwin_cons_C.txt',status='unknown') |
| 438 |
|
|
CALL MDSFINDUNIT( DAR_cons_unit6, mythid ) |
| 439 |
|
|
open(DAR_cons_unit6,file='darwin_cons_A.txt',status='unknown') |
| 440 |
|
|
CALL MDSFINDUNIT( DAR_cons_unit7, mythid ) |
| 441 |
|
|
open(DAR_cons_unit7,file='darwin_cons_O.txt',status='unknown') |
| 442 |
|
|
#endif |
| 443 |
jahn |
1.3 |
c myProcId and myThid |
| 444 |
|
|
ENDIF |
| 445 |
jahn |
1.1 |
#endif |
| 446 |
|
|
|
| 447 |
|
|
c test.................... |
| 448 |
|
|
c write(6,*)'finishing darwin_init_vari ' |
| 449 |
|
|
c test.................... |
| 450 |
|
|
WRITE(msgBuf,'(A)') |
| 451 |
|
|
& '// =======================================================' |
| 452 |
|
|
CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
| 453 |
|
|
& SQUEEZE_RIGHT, myThid ) |
| 454 |
|
|
WRITE(msgBuf,'(A)') '// Darwin init variables >>> END <<<' |
| 455 |
|
|
CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
| 456 |
|
|
& SQUEEZE_RIGHT, myThid ) |
| 457 |
|
|
WRITE(msgBuf,'(A)') |
| 458 |
|
|
& '// =======================================================' |
| 459 |
|
|
CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
| 460 |
|
|
& SQUEEZE_RIGHT, myThid ) |
| 461 |
|
|
|
| 462 |
|
|
|
| 463 |
|
|
RETURN |
| 464 |
|
|
END |
| 465 |
|
|
#endif /*MONOD*/ |
| 466 |
|
|
#endif /*ALLOW_PTRACERS*/ |
| 467 |
|
|
c ========================================================== |
| 468 |
|
|
|
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