/[MITgcm]/MITgcm_contrib/darwin2/pkg/monod/monod_diagnostics_init.F
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Revision 1.2 - (show annotations) (download)
Wed Nov 9 23:34:17 2011 UTC (13 years, 8 months ago) by jahn
Branch: MAIN
CVS Tags: ctrb_darwin2_ckpt64k_20130723, ctrb_darwin2_ckpt65w_20160512, ctrb_darwin2_ckpt65j_20150225, ctrb_darwin2_ckpt63l_20120405, ctrb_darwin2_ckpt66g_20170424, ctrb_darwin2_ckpt64h_20130528, ctrb_darwin2_ckpt66k_20171025, ctrb_darwin2_ckpt66n_20180118, ctrb_darwin2_ckpt65v_20160409, ctrb_darwin2_ckpt65s_20160114, ctrb_darwin2_ckpt65_20140718, ctrb_darwin2_ckpt64m_20130820, ctrb_darwin2_ckpt66d_20170214, ctrb_darwin2_ckpt64r_20131210, ctrb_darwin2_ckpt65m_20150615, ctrb_darwin2_ckpt65q_20151118, ctrb_darwin2_ckpt65o_20150914, ctrb_darwin2_ckpt64f_20130405, ctrb_darwin2_ckpt63f_20111201, ctrb_darwin2_ckpt64a_20121116, ctrb_darwin2_ckpt65p_20151023, ctrb_darwin2_ckpt64n_20130826, ctrb_darwin2_ckpt65e_20140929, ctrb_darwin2_ckpt64o_20131024, ctrb_darwin2_ckpt64v_20140411, ctrb_darwin2_ckpt64z_20140711, ctrb_darwin2_ckpt65l_20150504, ctrb_darwin2_ckpt65z_20160929, ctrb_darwin2_ckpt65n_20150729, ctrb_darwin2_ckpt64y_20140622, ctrb_darwin2_ckpt65d_20140915, ctrb_darwin2_ckpt64t_20140202, ctrb_darwin2_ckpt66h_20170602, ctrb_darwin2_ckpt64i_20130622, ctrb_darwin2_ckpt64s_20140105, ctrb_darwin2_ckpt64x_20140524, ctrb_darwin2_ckpt63o_20120629, ctrb_darwin2_ckpt64e_20130305, ctrb_darwin2_ckpt65x_20160612, ctrb_darwin2_ckpt66f_20170407, ctrb_darwin2_ckpt63i_20120124, ctrb_darwin2_ckpt65g_20141120, ctrb_darwin2_ckpt63m_20120506, ctrb_darwin2_ckpt63s_20120908, ctrb_darwin2_ckpt65k_20150402, ctrb_darwin2_ckpt64w_20140502, ctrb_darwin2_ckpt63j_20120217, ctrb_darwin2_ckpt66a_20161020, ctrb_darwin2_ckpt63r_20120817, ctrb_darwin2_ckpt64g_20130503, ctrb_darwin2_ckpt64l_20130806, ctrb_darwin2_ckpt63g_20111220, ctrb_darwin2_ckpt65f_20141014, ctrb_darwin2_ckpt64c_20130120, ctrb_darwin2_ckpt66b_20161219, ctrb_darwin2_ckpt64u_20140308, ctrb_darwin2_ckpt64j_20130704, ctrb_darwin2_ckpt65i_20150123, ctrb_darwin2_ckpt66j_20170815, ctrb_darwin2_ckpt65y_20160801, ctrb_darwin2_ckpt63h_20111230, ctrb_darwin2_ckpt63p_20120707, ctrb_darwin2_ckpt66c_20170121, ctrb_darwin2_ckpt65a_20140728, ctrb_darwin2_ckpt65b_20140812, ctrb_darwin2_ckpt65t_20160221, ctrb_darwin2_ckpt64p_20131118, ctrb_darwin2_ckpt63q_20120731, ctrb_darwin2_ckpt64b_20121224, ctrb_darwin2_ckpt64d_20130219, ctrb_darwin2_ckpt66o_20180209, ctrb_darwin2_ckpt66e_20170314, ctrb_darwin2_ckpt64_20121012, ctrb_darwin2_ckpt64q_20131118, ctrb_darwin2_ckpt64p_20131024, ctrb_darwin2_ckpt65u_20160315, ctrb_darwin2_ckpt65r_20151221, ctrb_darwin2_ckpt66i_20170718, ctrb_darwin2_ckpt63n_20120604, ctrb_darwin2_ckpt63k_20120317, ctrb_darwin2_ckpt65c_20140830, ctrb_darwin2_ckpt66l_20171025, ctrb_darwin2_ckpt65h_20141217, ctrb_darwin2_ckpt66m_20171213, HEAD
Changes since 1.1: +18 -2 lines 
add Shannon and Simpson diversity indices
1 C $Header: /u/gcmpack/MITgcm_contrib/darwin2/pkg/monod/monod_diagnostics_init.F,v 1.1 2011/04/13 18:56:25 jahn Exp $
2 C $Name: $
3
4 #include "CPP_OPTIONS.h"
5 #include "PTRACERS_OPTIONS.h"
6 #include "DARWIN_OPTIONS.h"
7
8 #ifdef ALLOW_PTRACERS
9 #ifdef ALLOW_MONOD
10
11 CBOP
12 C !ROUTINE: MONOD_DIAGNOSTICS_INIT
13 C !INTERFACE:
14 SUBROUTINE MONOD_DIAGNOSTICS_INIT( myThid )
15 C !DESCRIPTION:
16 C Routine to initialize Darwin diagnostics
17
18 C !USES:
19 IMPLICIT NONE
20 C === Global variables ===
21 #include "SIZE.h"
22 #include "PTRACERS_SIZE.h"
23 #include "EEPARAMS.h"
24 #include "PARAMS.h"
25 #include "GCHEM.h"
26 #include "MONOD_SIZE.h"
27
28 C !INPUT/OUTPUT PARAMETERS:
29 C === Routine arguments ===
30 C myThid - Number of this instance of MONOD_DIAGNOSTICS_INIT
31 INTEGER myThid
32 CEOP
33
34 #ifdef ALLOW_DIAGNOSTICS
35 C !LOCAL VARIABLES:
36 C === Local variables ===
37 C msgBuf - Informational/error meesage buffer
38 c CHARACTER*(MAX_LEN_MBUF) msgBuf
39
40 INTEGER diagNum
41 CHARACTER*8 diagName
42 CHARACTER*16 diagCode
43 CHARACTER*16 diagUnits
44 CHARACTER*(80) diagTitle
45
46 INTEGER np
47
48 C---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
49
50 C-- Add diagnostics to the (long) list
51
52 C-- Add diagnostic PAR, PP and Nfix
53 diagName = 'PAR '
54 WRITE(diagTitle, '(A)') 'PAR'
55 diagUnits = 'uEin/m^2/s '
56 diagCode = 'SM P MR '
57 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
58 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
59
60 diagName = 'PP '
61 WRITE(diagTitle, '(A)') 'Primary Production'
62 diagUnits = 'mmol P/m^3/s '
63 diagCode = 'SM P MR '
64 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
65 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
66
67 diagName = 'Nfix '
68 WRITE(diagTitle, '(A)') 'N fixation'
69 diagUnits = 'mmol N/m^3/s '
70 diagCode = 'SM P MR '
71 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
72 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
73
74 diagName = 'Denit '
75 WRITE(diagTitle, '(A)') 'Denitrification'
76 diagUnits = 'mmol N/m^3/s '
77 diagCode = 'SM P MR '
78 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
79 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
80
81 c ANNA_TAVE
82 #ifdef WAVES_DIAG_PCHL
83 DO np=1,MIN(99,npmax)
84 C---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
85 C-- Add diagnostics of Pchl
86 c ANNA_Q format to allow more Ptracers I2.3 ??
87 WRITE(diagName,'(A,I2.2,A)') 'Pchl',np,' '
88 WRITE(diagTitle,'(A,I2.2)') 'Chl of Phy', np
89 diagUnits = 'mg chl/m^3 '
90 diagCode = 'SM P MR '
91 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
92 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
93
94 C---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
95 ENDDO /* np */
96 #endif /* WAVES_DIAG_PCHL */
97 c ANNA end TAVE
98
99 #ifdef DAR_DIAG_RSTAR
100 DO np=1,MIN(99,npmax)
101 C---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
102 C-- Add diagnostics of Rstar
103 WRITE(diagName,'(A,I2.2,A)') 'Rstar',np,' '
104 WRITE(diagTitle,'(A,I2.2)') 'Rstar^PO4 of Phy', np
105 diagUnits = 'mmol P/m^3 '
106 diagCode = 'SM P MR '
107 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
108 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
109
110 C---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
111 ENDDO /* np */
112 #endif /* DAR_DIAG_RSTAR */
113
114 #ifdef DAR_DIAG_DIVER
115 diagName = 'Diver1 '
116 WRITE(diagTitle, '(A)')
117 & '# Phy species over absolute threshold'
118 diagUnits = '1 '
119 diagCode = 'SM P MR '
120 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
121 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
122
123 diagName = 'Diver2 '
124 WRITE(diagTitle, '(A)')
125 & '# Phy species over threshold for proportion of biomass'
126 diagUnits = '1 '
127 diagCode = 'SM P MR '
128 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
129 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
130
131 diagName = 'Diver3 '
132 WRITE(diagTitle, '(A)')
133 & '# Phy species constituting bulk of biomass'
134 diagUnits = '1 '
135 diagCode = 'SM P MR '
136 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
137 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
138
139 diagName = 'Diver4 '
140 WRITE(diagTitle, '(A)')
141 & '# Phy species over threshold for ratio to maximum species'
142 diagUnits = '1 '
143 diagCode = 'SM P MR '
144 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
145 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
146
147 diagName = 'Shannon '
148 WRITE(diagTitle, '(A)')
149 & '# Shannon index'
150 diagUnits = '1 '
151 diagCode = 'SM P MR '
152 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
153 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
154
155 diagName = 'Simpson '
156 WRITE(diagTitle, '(A)')
157 & '# Simpson diversity index 1/sum p*p'
158 diagUnits = '1 '
159 diagCode = 'SM P MR '
160 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
161 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
162 #endif /* DAR_DIAG_DIVER */
163
164 #ifdef ALLOW_DIAZ
165 #ifdef DAR_DIAG_NFIXP
166 DO np=1,MIN(99,npmax)
167 C---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|C-- Add diagnostics of NFix
168 WRITE(diagName,'(A,I2.2,A)') 'NfixP',np,' '
169 WRITE(diagTitle,'(A,I2.2)') 'Nfix of Phy', np
170 diagUnits = 'mmol N/m^3 '
171 diagCode = 'SM P MR '
172 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
173 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
174
175 C---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----| ENDDO /* np */
176 ENDDO /* np */
177 #endif /* DAR_DIAG_NFIXP */
178 #endif
179
180 #ifdef ALLOW_PAR_DAY
181 diagName = 'PARday '
182 WRITE(diagTitle, '(A)') 'daily-averaged PAR'
183 diagUnits = 'uEin/m^2/s '
184 diagCode = 'SM P MR '
185 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
186 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
187 #endif /* ALLOW_PAR_DAY */
188
189 #ifdef DAR_DIAG_CHL
190 diagName = 'ChlGeide'
191 WRITE(diagTitle, '(A)') 'Chlorophyll a concentration a la Geider'
192 diagUnits = 'mg Chla/m^3 '
193 diagCode = 'SM P MR '
194 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
195 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
196 diagName = 'Chl2CGei'
197 WRITE(diagTitle, '(A)')'Chlorophyll a to carbon ratio a la Geider'
198 diagUnits = 'mg Chla/mmol C '
199 diagCode = 'SM P MR '
200 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
201 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
202
203 diagName = 'ChlDoney'
204 WRITE(diagTitle, '(A)') 'Chlorophyll a concentration a la Doney'
205 diagUnits = 'mg Chla/m^3 '
206 diagCode = 'SM P MR '
207 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
208 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
209
210 diagName = 'Chl2CDon'
211 WRITE(diagTitle, '(A)') 'Chlorophyll a to carbon ratio a la Doney'
212 diagUnits = 'mg Chla/mmol C '
213 diagCode = 'SM P MR '
214 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
215 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
216
217 diagName = 'ChlCloer'
218 WRITE(diagTitle, '(A)') 'Chlorophyll a concentration a la Cloern'
219 diagUnits = 'mg Chla/m^3 '
220 diagCode = 'SM P MR '
221 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
222 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
223 diagName = 'Chl2CClo'
224 WRITE(diagTitle, '(A)')'Chlorophyll a to carbon ratio a la Cloern'
225 diagUnits = 'mg Chla/mmol C '
226 diagCode = 'SM P MR '
227 CALL DIAGNOSTICS_ADDTOLIST( diagNum,
228 I diagName, diagCode, diagUnits, diagTitle, 0, myThid )
229 #endif /* DAR_DIAG_CHL */
230
231 #endif /* ALLOW_DIAGNOSTICS */
232
233 RETURN
234 END
235 C============================================================================
236 #endif
237 #endif
238
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