| 1 |
C $Header: /u/gcmpack/MITgcm_contrib/darwin2/pkg/monod/MONOD.h,v 1.4 2011/11/09 23:34:17 jahn Exp $ |
| 2 |
C $Name: $ |
| 3 |
|
| 4 |
c MONOD.h |
| 5 |
c description: Key parameter arrays for generalized ecosystem model |
| 6 |
c Mick Follows, Scott Grant Fall/Winter 2005 |
| 7 |
c Stephanie Dutkiewicz Spring/Summer 2006 |
| 8 |
c |
| 9 |
c |
| 10 |
c npmax = no of "functional groups" of phytoplankton |
| 11 |
c nzmax = no of "functional groups" of zooplankton |
| 12 |
c |
| 13 |
c |
| 14 |
c NOTE: list not complete!! |
| 15 |
c mu = max growth rate (s-1) |
| 16 |
c ksat = half sat coeff, phyto specific for each nutrient |
| 17 |
c ksatlight = half sat coeff wrt light, phyto specific |
| 18 |
c graze = grazing rate, phyto specific for each zooplankton |
| 19 |
c mortzoo = mortality rate for each zooplankton |
| 20 |
c mortzoo2 = quadratic mortality rate for each zooplankton |
| 21 |
c wsink = sinking speed, phyto specific |
| 22 |
c R_XY = stoichiometric ratios of nutrients in phytoplankton |
| 23 |
c specific to each functional group, relative to Phos |
| 24 |
c physize = size class of phytoplankton; 0.0="small", 1.0="big" |
| 25 |
c diacoc: 1.0 uses silica, 0.0 does not use silica |
| 26 |
c diacoc: 2.0 uses PIC, 0.0 does not use PIC |
| 27 |
c diazotrph: 1.0 fixes nitrogen, 0.0 does not fix nitrogen |
| 28 |
c zoosize = size class of zooplankton; 0.0="small", 1.0="big" |
| 29 |
c ExportFracZ(nzmax) = fraction of Z mortality sinking out: |
| 30 |
c rest remineralizes locally |
| 31 |
c Kpremin_xx = remin rate constant for particulate detritus |
| 32 |
c ngroups = tracks how many different "functional groups" of phyto |
| 33 |
c have been tried |
| 34 |
|
| 35 |
|
| 36 |
COMMON/darwin_ecoparam/mu,ksatPO4,ksatNO3,ksatNO2,ksatNH4, |
| 37 |
& ksatSi,ksatFeT,ksatPAR, |
| 38 |
& mortzoo,wsink,R_NP,R_FeP,R_SiP,R_PC,R_PICPOC, physize, |
| 39 |
& diacoc,diazotroph,zoosize,ExportFracZ, |
| 40 |
& Kpremin_P, Kpremin_N, Kpremin_Fe, Kpremin_Si, |
| 41 |
& sig1,sig2,sig3, |
| 42 |
& phytoTempCoeff, phytoTempExp1, |
| 43 |
& phytoTempExp2, phytoTempOptimum, phytoDecayPower, |
| 44 |
& zooTempCoeff, zooTempExp, zooTempOptimum, kinhib, |
| 45 |
& diatomgraz, coccograz, olargegraz, |
| 46 |
& mortphy, ExportFracP, |
| 47 |
& mortzoo2, |
| 48 |
& Smallgrow, Biggrow, Smallmort, Bigmort, |
| 49 |
& Smallgrowrange, Biggrowrange, Smallmortrange, |
| 50 |
& Bigmortrange, |
| 51 |
& Smallexport, Bigexport, |
| 52 |
& smallksatpar, smallksatparstd, |
| 53 |
& smallkinhib, smallkinhibstd, |
| 54 |
& Bigksatpar, Bigksatparstd, |
| 55 |
& Bigkinhib, Bigkinhibstd, |
| 56 |
& tempcoeff1, tempcoeff2_small, |
| 57 |
& tempcoeff2_big, tempcoeff3, |
| 58 |
& tempmax, temprange, tempnorm, tempdecay, |
| 59 |
& SmallPsat, BigPsat, ProcPsat, |
| 60 |
& SmallPsatrange, BigPsatrange, ProcPsatrange, |
| 61 |
& prochlPsat, |
| 62 |
& UniDzPsat, UniDzPsatrange, |
| 63 |
& depthdenit, o2crit, denit_np, |
| 64 |
#ifdef OLD_GRAZE |
| 65 |
& graze, |
| 66 |
& kgrazesat, |
| 67 |
& GrazeEffsmall, GrazeEffbig, GrazeFast, GrazeSlow, |
| 68 |
#else |
| 69 |
& grazemax, palat, asseff, |
| 70 |
& kgrazesat, |
| 71 |
& GrazeEfflow, GrazeEffmod, GrazeEffhi, |
| 72 |
& GrazeFast, GrazeSlow, |
| 73 |
& palathi, palatlo, |
| 74 |
& phygrazmin, |
| 75 |
& ExportFracGraz, |
| 76 |
& ExGrazfracbig, ExGrazfracsmall, |
| 77 |
& hollexp, |
| 78 |
#endif |
| 79 |
& ZoomortSmall, ZoomortBig, ZooexfacSmall, ZooexfacBig, |
| 80 |
& ZoomortSmall2, ZoomortBig2, |
| 81 |
& val_R_SiP_diatom, val_R_NP_diaz, val_RFeP_diaz, |
| 82 |
& val_R_NP, val_RFeP, val_R_PC, |
| 83 |
& val_R_PICPOC, |
| 84 |
& ksatNH4fac, ksatNO2fac, val_ksatsi, |
| 85 |
& ngrowfac, ilight, |
| 86 |
& phymin, PAR0, diaz_growfac, |
| 87 |
& phyto_esd, phyto_vol, |
| 88 |
& zoo_esd, zoo_vol |
| 89 |
#ifdef IRON_SED_SOURCE |
| 90 |
& ,depthfesed,fesedflux,fesedflux_pcm |
| 91 |
#endif |
| 92 |
#ifdef PART_SCAV |
| 93 |
& ,scav_rat, scav_inter, scav_exp |
| 94 |
#endif |
| 95 |
#ifdef ALLOW_CDOM |
| 96 |
& , fraccdom, cdomdegrd, cdombleach, PARcdom |
| 97 |
& , rnp_cdom, rfep_cdom, rcp_cdom |
| 98 |
& , cdomcoeff |
| 99 |
#endif |
| 100 |
& ,nsource,ngroups |
| 101 |
|
| 102 |
_RL mu(npmax) |
| 103 |
_RL ksatPO4(npmax) |
| 104 |
_RL ksatNO3(npmax) |
| 105 |
_RL ksatNO2(npmax) |
| 106 |
_RL ksatNH4(npmax) |
| 107 |
_RL ksatSi(npmax) |
| 108 |
_RL ksatFeT(npmax) |
| 109 |
_RL ksatPAR(npmax) |
| 110 |
_RL mortzoo(nzmax) |
| 111 |
_RL mortzoo2(nzmax) |
| 112 |
_RL wsink(npmax) |
| 113 |
_RL R_NP(npmax) |
| 114 |
_RL R_FeP(npmax) |
| 115 |
_RL R_SiP(npmax) |
| 116 |
_RL R_PC(npmax) |
| 117 |
_RL R_PICPOC(npmax) |
| 118 |
_RL physize(npmax) |
| 119 |
_RL diacoc(npmax) |
| 120 |
_RL diazotroph(npmax) |
| 121 |
_RL zoosize(nzmax) |
| 122 |
_RL ExportFracZ(nzmax) |
| 123 |
_RL Kpremin_P |
| 124 |
_RL Kpremin_N |
| 125 |
_RL Kpremin_Fe |
| 126 |
_RL Kpremin_Si |
| 127 |
_RL phytoTempCoeff(npmax) |
| 128 |
_RL phytoTempExp1(npmax) |
| 129 |
_RL phytoTempExp2(npmax) |
| 130 |
_RL phytoTempOptimum(npmax) |
| 131 |
_RL phytoDecayPower(npmax) |
| 132 |
_RL zooTempCoeff(nzmax) |
| 133 |
_RL zooTempExp(nzmax) |
| 134 |
_RL zooTempOptimum(nzmax) |
| 135 |
_RL diatomgraz, coccograz, olargegraz |
| 136 |
_RL kinhib(npmax) |
| 137 |
_RL mortphy(npmax) |
| 138 |
_RL ExportFracP(npmax) |
| 139 |
_RL Smallgrow, Biggrow |
| 140 |
_RL Smallmort, Bigmort |
| 141 |
_RL Smallgrowrange, Biggrowrange |
| 142 |
_RL Smallmortrange, Bigmortrange |
| 143 |
_RL Smallexport, Bigexport |
| 144 |
_RL smallksatpar, smallksatparstd |
| 145 |
_RL smallkinhib, smallkinhibstd |
| 146 |
_RL tempcoeff1, tempcoeff2_big |
| 147 |
_RL tempcoeff2_small, tempcoeff3 |
| 148 |
_RL tempmax, temprange, tempnorm,tempdecay |
| 149 |
_RL Bigksatpar, Bigksatparstd |
| 150 |
_RL Bigkinhib, Bigkinhibstd |
| 151 |
_RL SmallPsat, BigPsat, ProcPsat |
| 152 |
_RL SmallPsatrange, BigPsatrange, ProcPsatrange |
| 153 |
_RL prochlPsat |
| 154 |
_RL UniDzPsat, UniDzPsatrange |
| 155 |
_RL depthdenit |
| 156 |
_RL o2crit |
| 157 |
_RL denit_np |
| 158 |
_RL ksatNH4fac, ksatNO2fac |
| 159 |
_RL sig1,sig2,sig3 |
| 160 |
_RL val_ksatsi |
| 161 |
#ifdef OLD_GRAZE |
| 162 |
_RL graze(npmax,nzmax) |
| 163 |
_RL kgrazesat |
| 164 |
_RL GrazeEffsmall, GrazeEffbig, GrazeFast, GrazeSlow |
| 165 |
#else |
| 166 |
_RL grazemax(nzmax) |
| 167 |
_RL palat(npmax,nzmax) |
| 168 |
_RL asseff(npmax,nzmax) |
| 169 |
_RL kgrazesat |
| 170 |
_RL GrazeEfflow, GrazeEffmod, GrazeEffhi |
| 171 |
_RL GrazeFast, GrazeSlow |
| 172 |
_RL palathi, palatlo |
| 173 |
_RL phygrazmin |
| 174 |
_RL ExportFracGraz(nzmax) |
| 175 |
_RL ExGrazfracbig, ExGrazfracsmall |
| 176 |
_RL hollexp |
| 177 |
#endif |
| 178 |
_RL ZoomortSmall, ZoomortBig, ZooexfacSmall, ZooexfacBig |
| 179 |
_RL ZoomortSmall2, ZoomortBig2 |
| 180 |
_RL val_R_SiP_diatom, val_R_NP_diaz, val_RFeP_diaz, |
| 181 |
& val_R_NP, val_RFeP, val_R_PC, val_R_PICPOC |
| 182 |
_RL ngrowfac,ilight |
| 183 |
_RL phymin |
| 184 |
_RL PAR0 |
| 185 |
_RL phyto_esd(npmax) |
| 186 |
_RL phyto_vol(npmax) |
| 187 |
_RL zoo_esd(nzmax) |
| 188 |
_RL zoo_vol(nzmax) |
| 189 |
#ifdef IRON_SED_SOURCE |
| 190 |
_RL depthfesed, fesedflux, fesedflux_pcm |
| 191 |
#endif |
| 192 |
#ifdef PART_SCAV |
| 193 |
_RL scav_rat, scav_inter, scav_exp |
| 194 |
#endif |
| 195 |
#ifdef ALLOW_CDOM |
| 196 |
_RL fraccdom, cdomdegrd, cdombleach, PARcdom |
| 197 |
_RL rnp_cdom, rfep_cdom, rcp_cdom |
| 198 |
_RL cdomcoeff |
| 199 |
#endif |
| 200 |
INTEGER nsource(npmax) |
| 201 |
INTEGER ngroups |
| 202 |
|
| 203 |
|
| 204 |
COMMON/darwin_detritus/wp_sink,wn_sink,wfe_sink,wsi_sink, |
| 205 |
& Kdop,Kdon,KdoFe,SmallSink,BigSink, |
| 206 |
& Knita, Knitb |
| 207 |
_RL wp_sink |
| 208 |
_RL wn_sink |
| 209 |
_RL wfe_sink |
| 210 |
_RL wsi_sink |
| 211 |
_RL Kdop |
| 212 |
_RL Kdon |
| 213 |
_RL KdoFe |
| 214 |
_RL SmallSink |
| 215 |
_RL BigSink |
| 216 |
_RL Knita |
| 217 |
_RL Knitb |
| 218 |
_RL diaz_growfac |
| 219 |
|
| 220 |
c k0, kc - light coefficients |
| 221 |
COMMON/darwin_lightparam/ k0, kc, parfrac, parconv |
| 222 |
_RL k0, kc, parfrac, parconv |
| 223 |
|
| 224 |
c chlpmax - chl:p max ratio |
| 225 |
c chlpmin - chl:p min ratio |
| 226 |
c istar - photoadaptation light limit |
| 227 |
COMMON/darwin_chlparam/ chlpmax, chlpmin, istar |
| 228 |
_RL chlpmax, chlpmin, istar |
| 229 |
|
| 230 |
COMMON/darwin_diags_param/ |
| 231 |
& diver_thresh0, diver_thresh1, |
| 232 |
& diver_thresh2, diver_thresh3, |
| 233 |
& diver_thresh4, shannon_thresh |
| 234 |
|
| 235 |
_RL diver_thresh0, diver_thresh1 |
| 236 |
_RL diver_thresh2, diver_thresh3 |
| 237 |
_RL diver_thresh4, shannon_thresh |
| 238 |
|
| 239 |
#ifdef GEIDER |
| 240 |
c ANNA geider by mQyield instead of alpha |
| 241 |
COMMON/geider_vars/ |
| 242 |
& pcmax, alphachl, chl2cmax, chl2cmin, |
| 243 |
& mQyield,aphy_chl_ave, |
| 244 |
& inhibcoef_geid, inhibcoef_geid_val, |
| 245 |
#ifdef WAVEBANDS |
| 246 |
& alpha_mean, |
| 247 |
#endif |
| 248 |
#ifdef DYNAMIC_CHL |
| 249 |
& acclimtimescl, |
| 250 |
#endif |
| 251 |
c & Bigalphachl, Bigalphachlrange, |
| 252 |
c & Smallalphachl, Smallalphachlrange, |
| 253 |
& BigmQyield, BigmQyieldrange, |
| 254 |
& SmallmQyield, SmallmQyieldrange, |
| 255 |
& Bigchl2cmax, Bigchl2cmaxrange, |
| 256 |
& Smallchl2cmax, Smallchl2cmaxrange |
| 257 |
c _RL phychl(npmax) |
| 258 |
_RL pcmax(npmax) |
| 259 |
_RL alphachl(npmax) |
| 260 |
_RL mQyield(npmax) |
| 261 |
_RL chl2cmax(npmax) |
| 262 |
_RL chl2cmin(npmax) |
| 263 |
_RL inhibcoef_geid(npmax) |
| 264 |
_RL inhibcoef_geid_val |
| 265 |
#ifdef WAVEBANDS |
| 266 |
_RL alpha_mean(npmax) |
| 267 |
#endif |
| 268 |
#ifdef DYNAMIC_CHL |
| 269 |
_RL acclimtimescl |
| 270 |
#endif |
| 271 |
|
| 272 |
|
| 273 |
c _RL Bigalphachl, Bigalphachlrange, |
| 274 |
c & Smallalphachl, Smallalphachlrange, |
| 275 |
_RL BigmQyield, BigmQyieldrange, |
| 276 |
& SmallmQyield, SmallmQyieldrange, |
| 277 |
& Bigchl2cmax, Bigchl2cmaxrange, |
| 278 |
& Smallchl2cmax, Smallchl2cmaxrange, |
| 279 |
& aphy_chl_ave |
| 280 |
#endif |
| 281 |
#ifdef DAR_DIAG_CHL |
| 282 |
COMMON/DAR_DIAG_CHL_VARS/ |
| 283 |
& Geider_alphachl, Geider_chl2cmin, Geider_chl2cmax |
| 284 |
_RL Geider_alphachl(npmax) |
| 285 |
_RL Geider_chl2cmin(npmax) |
| 286 |
_RL Geider_chl2cmax(npmax) |
| 287 |
#endif /* DAR_DIAG_CHL */ |
| 288 |
|
| 289 |
|
| 290 |
#ifdef ALLOW_CARBON |
| 291 |
COMMON/darwin_carbon/ R_OP, wc_sink, wpic_sink, |
| 292 |
& Kdoc, Kpremin_C, Kdissc |
| 293 |
_RL R_OP |
| 294 |
_RL wc_sink |
| 295 |
_RL wpic_sink |
| 296 |
_RL Kdoc |
| 297 |
_RL Kpremin_C |
| 298 |
_RL Kdissc |
| 299 |
#endif |
| 300 |
|
Parent Directory
| 
Revision Log
| 
Revision Graph