/[MITgcm]/MITgcm_contrib/darwin2/pkg/monod/MONOD.h
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revision 1.2 by stephd, Wed Oct 5 20:37:22 2011 UTC revision 1.6 by stephd, Thu Jul 26 18:01:22 2012 UTC
# Line 17  c ksat = half sat coeff, phyto specific Line 17  c ksat = half sat coeff, phyto specific
17  c ksatlight = half sat coeff wrt light, phyto specific  c ksatlight = half sat coeff wrt light, phyto specific
18  c graze = grazing rate, phyto specific for each zooplankton  c graze = grazing rate, phyto specific for each zooplankton
19  c mortzoo = mortality rate for each zooplankton  c mortzoo = mortality rate for each zooplankton
20    c mortzoo2 = quadratic mortality rate for each zooplankton
21  c wsink = sinking speed, phyto specific  c wsink = sinking speed, phyto specific
22  c R_XY = stoichiometric ratios of nutrients in phytoplankton  c R_XY = stoichiometric ratios of nutrients in phytoplankton
23  c        specific to each functional group, relative to Phos  c        specific to each functional group, relative to Phos
# Line 43  c           have been tried Line 44  c           have been tried
44       &          zooTempCoeff, zooTempExp, zooTempOptimum, kinhib,       &          zooTempCoeff, zooTempExp, zooTempOptimum, kinhib,
45       &          diatomgraz, coccograz, olargegraz,       &          diatomgraz, coccograz, olargegraz,
46       &          mortphy, ExportFracP,       &          mortphy, ExportFracP,
47         &          mortzoo2,
48       &          Smallgrow, Biggrow, Smallmort, Bigmort,       &          Smallgrow, Biggrow, Smallmort, Bigmort,
49       &          Smallgrowrange, Biggrowrange, Smallmortrange,       &          Smallgrowrange, Biggrowrange, Smallmortrange,
50       &          Bigmortrange,       &          Bigmortrange,
# Line 58  c           have been tried Line 60  c           have been tried
60       &          SmallPsatrange, BigPsatrange, ProcPsatrange,       &          SmallPsatrange, BigPsatrange, ProcPsatrange,
61       &          prochlPsat,       &          prochlPsat,
62       &          UniDzPsat, UniDzPsatrange,       &          UniDzPsat, UniDzPsatrange,
63       &          depthdenit, o2crit, denit_np,       &          depthdenit, o2crit, denit_np, denit_no3, no3crit,
64  #ifdef OLD_GRAZE  #ifdef OLD_GRAZE
65       &          graze,       &          graze,
66       &          kgrazesat,       &          kgrazesat,
# Line 75  c           have been tried Line 77  c           have been tried
77       &          hollexp,       &          hollexp,
78  #endif  #endif
79       &          ZoomortSmall, ZoomortBig, ZooexfacSmall, ZooexfacBig,       &          ZoomortSmall, ZoomortBig, ZooexfacSmall, ZooexfacBig,
80         &          ZoomortSmall2, ZoomortBig2,
81       &          val_R_SiP_diatom, val_R_NP_diaz, val_RFeP_diaz,       &          val_R_SiP_diatom, val_R_NP_diaz, val_RFeP_diaz,
82       &          val_R_NP, val_RFeP, val_R_PC,       &          val_R_NP, val_RFeP, val_R_PC,
83       &          val_R_PICPOC,       &          val_R_PICPOC,
# Line 89  c           have been tried Line 92  c           have been tried
92  #ifdef PART_SCAV  #ifdef PART_SCAV
93       &         ,scav_rat, scav_inter, scav_exp       &         ,scav_rat, scav_inter, scav_exp
94  #endif  #endif
95    #ifdef ALLOW_CDOM
96         &         , fraccdom, cdomdegrd, cdombleach, PARcdom
97         &         , rnp_cdom, rfep_cdom, rcp_cdom
98         &         , cdomcoeff
99    #endif
100       &         ,nsource,ngroups       &         ,nsource,ngroups
101            
102           _RL mu(npmax)           _RL mu(npmax)
# Line 100  c           have been tried Line 108  c           have been tried
108           _RL ksatFeT(npmax)           _RL ksatFeT(npmax)
109           _RL ksatPAR(npmax)           _RL ksatPAR(npmax)
110           _RL mortzoo(nzmax)           _RL mortzoo(nzmax)
111             _RL mortzoo2(nzmax)
112           _RL wsink(npmax)           _RL wsink(npmax)
113           _RL R_NP(npmax)           _RL R_NP(npmax)
114           _RL R_FeP(npmax)           _RL R_FeP(npmax)
# Line 145  c           have been tried Line 154  c           have been tried
154           _RL UniDzPsat, UniDzPsatrange           _RL UniDzPsat, UniDzPsatrange
155           _RL depthdenit           _RL depthdenit
156           _RL o2crit           _RL o2crit
157           _RL denit_np           _RL denit_np, denit_no3
158             _RL no3crit
159           _RL ksatNH4fac, ksatNO2fac           _RL ksatNH4fac, ksatNO2fac
160           _RL sig1,sig2,sig3           _RL sig1,sig2,sig3
161           _RL val_ksatsi           _RL val_ksatsi
# Line 167  c           have been tried Line 177  c           have been tried
177           _RL hollexp           _RL hollexp
178  #endif  #endif
179           _RL ZoomortSmall, ZoomortBig, ZooexfacSmall, ZooexfacBig           _RL ZoomortSmall, ZoomortBig, ZooexfacSmall, ZooexfacBig
180             _RL ZoomortSmall2, ZoomortBig2
181           _RL val_R_SiP_diatom, val_R_NP_diaz, val_RFeP_diaz,           _RL val_R_SiP_diatom, val_R_NP_diaz, val_RFeP_diaz,
182       &          val_R_NP, val_RFeP, val_R_PC, val_R_PICPOC       &          val_R_NP, val_RFeP, val_R_PC, val_R_PICPOC
183           _RL ngrowfac,ilight           _RL ngrowfac,ilight
# Line 182  c           have been tried Line 193  c           have been tried
193  #ifdef PART_SCAV  #ifdef PART_SCAV
194           _RL scav_rat, scav_inter, scav_exp           _RL scav_rat, scav_inter, scav_exp
195  #endif  #endif
196    #ifdef ALLOW_CDOM
197             _RL fraccdom, cdomdegrd, cdombleach, PARcdom
198             _RL rnp_cdom, rfep_cdom, rcp_cdom
199             _RL cdomcoeff
200    #endif
201           INTEGER nsource(npmax)           INTEGER nsource(npmax)
202           INTEGER ngroups           INTEGER ngroups
203    
# Line 216  c    istar          - photoadaptation li Line 231  c    istar          - photoadaptation li
231           COMMON/darwin_diags_param/           COMMON/darwin_diags_param/
232       &          diver_thresh0, diver_thresh1,       &          diver_thresh0, diver_thresh1,
233       &          diver_thresh2, diver_thresh3,       &          diver_thresh2, diver_thresh3,
234       &          diver_thresh4       &          diver_thresh4, shannon_thresh
235    
236           _RL diver_thresh0, diver_thresh1           _RL diver_thresh0, diver_thresh1
237           _RL diver_thresh2, diver_thresh3           _RL diver_thresh2, diver_thresh3
238           _RL diver_thresh4           _RL diver_thresh4, shannon_thresh
239    
240  #ifdef GEIDER  #ifdef GEIDER
241  c ANNA geider by mQyield instead of alpha  c ANNA geider by mQyield instead of alpha
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