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jahn |
1.7 |
C $Header: /u/gcmpack/MITgcm_contrib/darwin2/pkg/monod/MONOD.h,v 1.6 2012/07/26 18:01:22 stephd Exp $ |
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stephd |
1.2 |
C $Name: $ |
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jahn |
1.1 |
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c MONOD.h |
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c description: Key parameter arrays for generalized ecosystem model |
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c Mick Follows, Scott Grant Fall/Winter 2005 |
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c Stephanie Dutkiewicz Spring/Summer 2006 |
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c |
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c |
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c npmax = no of "functional groups" of phytoplankton |
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c nzmax = no of "functional groups" of zooplankton |
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c |
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c |
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c NOTE: list not complete!! |
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c mu = max growth rate (s-1) |
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c ksat = half sat coeff, phyto specific for each nutrient |
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c ksatlight = half sat coeff wrt light, phyto specific |
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c graze = grazing rate, phyto specific for each zooplankton |
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c mortzoo = mortality rate for each zooplankton |
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stephd |
1.3 |
c mortzoo2 = quadratic mortality rate for each zooplankton |
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jahn |
1.1 |
c wsink = sinking speed, phyto specific |
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c R_XY = stoichiometric ratios of nutrients in phytoplankton |
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c specific to each functional group, relative to Phos |
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c physize = size class of phytoplankton; 0.0="small", 1.0="big" |
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c diacoc: 1.0 uses silica, 0.0 does not use silica |
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c diacoc: 2.0 uses PIC, 0.0 does not use PIC |
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c diazotrph: 1.0 fixes nitrogen, 0.0 does not fix nitrogen |
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c zoosize = size class of zooplankton; 0.0="small", 1.0="big" |
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c ExportFracZ(nzmax) = fraction of Z mortality sinking out: |
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c rest remineralizes locally |
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c Kpremin_xx = remin rate constant for particulate detritus |
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c ngroups = tracks how many different "functional groups" of phyto |
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c have been tried |
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COMMON/darwin_ecoparam/mu,ksatPO4,ksatNO3,ksatNO2,ksatNH4, |
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& ksatSi,ksatFeT,ksatPAR, |
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& mortzoo,wsink,R_NP,R_FeP,R_SiP,R_PC,R_PICPOC, physize, |
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jahn |
1.7 |
#ifdef FIX_ZOO_QUOTAS |
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& R_NP_zoo,R_FeP_zoo,R_SiP_zoo,R_PC_zoo, |
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#endif |
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jahn |
1.1 |
& diacoc,diazotroph,zoosize,ExportFracZ, |
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& Kpremin_P, Kpremin_N, Kpremin_Fe, Kpremin_Si, |
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& sig1,sig2,sig3, |
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& phytoTempCoeff, phytoTempExp1, |
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& phytoTempExp2, phytoTempOptimum, phytoDecayPower, |
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& zooTempCoeff, zooTempExp, zooTempOptimum, kinhib, |
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& diatomgraz, coccograz, olargegraz, |
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& mortphy, ExportFracP, |
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stephd |
1.3 |
& mortzoo2, |
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jahn |
1.1 |
& Smallgrow, Biggrow, Smallmort, Bigmort, |
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& Smallgrowrange, Biggrowrange, Smallmortrange, |
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& Bigmortrange, |
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& Smallexport, Bigexport, |
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& smallksatpar, smallksatparstd, |
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& smallkinhib, smallkinhibstd, |
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& Bigksatpar, Bigksatparstd, |
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& Bigkinhib, Bigkinhibstd, |
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& tempcoeff1, tempcoeff2_small, |
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& tempcoeff2_big, tempcoeff3, |
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& tempmax, temprange, tempnorm, tempdecay, |
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& SmallPsat, BigPsat, ProcPsat, |
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& SmallPsatrange, BigPsatrange, ProcPsatrange, |
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& prochlPsat, |
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& UniDzPsat, UniDzPsatrange, |
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stephd |
1.6 |
& depthdenit, o2crit, denit_np, denit_no3, no3crit, |
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jahn |
1.1 |
#ifdef OLD_GRAZE |
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& graze, |
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& kgrazesat, |
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& GrazeEffsmall, GrazeEffbig, GrazeFast, GrazeSlow, |
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#else |
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& grazemax, palat, asseff, |
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& kgrazesat, |
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& GrazeEfflow, GrazeEffmod, GrazeEffhi, |
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& GrazeFast, GrazeSlow, |
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& palathi, palatlo, |
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& phygrazmin, |
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& ExportFracGraz, |
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& ExGrazfracbig, ExGrazfracsmall, |
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stephd |
1.2 |
& hollexp, |
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jahn |
1.1 |
#endif |
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& ZoomortSmall, ZoomortBig, ZooexfacSmall, ZooexfacBig, |
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stephd |
1.3 |
& ZoomortSmall2, ZoomortBig2, |
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jahn |
1.1 |
& val_R_SiP_diatom, val_R_NP_diaz, val_RFeP_diaz, |
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& val_R_NP, val_RFeP, val_R_PC, |
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& val_R_PICPOC, |
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jahn |
1.7 |
#ifdef FIX_ZOO_QUOTAS |
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& val_R_NP_zoo, val_RFeP_zoo, val_R_SiP_zoo, val_R_PC_zoo, |
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#endif |
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jahn |
1.1 |
& ksatNH4fac, ksatNO2fac, val_ksatsi, |
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& ngrowfac, ilight, |
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& phymin, PAR0, diaz_growfac, |
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& phyto_esd, phyto_vol, |
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& zoo_esd, zoo_vol |
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#ifdef IRON_SED_SOURCE |
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& ,depthfesed,fesedflux,fesedflux_pcm |
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#endif |
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#ifdef PART_SCAV |
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& ,scav_rat, scav_inter, scav_exp |
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#endif |
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stephd |
1.5 |
#ifdef ALLOW_CDOM |
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& , fraccdom, cdomdegrd, cdombleach, PARcdom |
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& , rnp_cdom, rfep_cdom, rcp_cdom |
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& , cdomcoeff |
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#endif |
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jahn |
1.1 |
& ,nsource,ngroups |
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_RL mu(npmax) |
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_RL ksatPO4(npmax) |
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_RL ksatNO3(npmax) |
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_RL ksatNO2(npmax) |
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_RL ksatNH4(npmax) |
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_RL ksatSi(npmax) |
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_RL ksatFeT(npmax) |
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_RL ksatPAR(npmax) |
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_RL mortzoo(nzmax) |
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stephd |
1.3 |
_RL mortzoo2(nzmax) |
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jahn |
1.1 |
_RL wsink(npmax) |
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_RL R_NP(npmax) |
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_RL R_FeP(npmax) |
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_RL R_SiP(npmax) |
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_RL R_PC(npmax) |
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_RL R_PICPOC(npmax) |
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jahn |
1.7 |
#ifdef FIX_ZOO_QUOTAS |
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_RL R_NP_zoo(nzmax) |
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_RL R_FeP_zoo(nzmax) |
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_RL R_SiP_zoo(nzmax) |
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_RL R_PC_zoo(nzmax) |
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#endif |
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jahn |
1.1 |
_RL physize(npmax) |
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_RL diacoc(npmax) |
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_RL diazotroph(npmax) |
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_RL zoosize(nzmax) |
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_RL ExportFracZ(nzmax) |
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_RL Kpremin_P |
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_RL Kpremin_N |
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_RL Kpremin_Fe |
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_RL Kpremin_Si |
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_RL phytoTempCoeff(npmax) |
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_RL phytoTempExp1(npmax) |
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_RL phytoTempExp2(npmax) |
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_RL phytoTempOptimum(npmax) |
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_RL phytoDecayPower(npmax) |
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_RL zooTempCoeff(nzmax) |
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_RL zooTempExp(nzmax) |
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_RL zooTempOptimum(nzmax) |
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_RL diatomgraz, coccograz, olargegraz |
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_RL kinhib(npmax) |
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_RL mortphy(npmax) |
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_RL ExportFracP(npmax) |
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_RL Smallgrow, Biggrow |
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_RL Smallmort, Bigmort |
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_RL Smallgrowrange, Biggrowrange |
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_RL Smallmortrange, Bigmortrange |
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_RL Smallexport, Bigexport |
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_RL smallksatpar, smallksatparstd |
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_RL smallkinhib, smallkinhibstd |
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_RL tempcoeff1, tempcoeff2_big |
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_RL tempcoeff2_small, tempcoeff3 |
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_RL tempmax, temprange, tempnorm,tempdecay |
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_RL Bigksatpar, Bigksatparstd |
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_RL Bigkinhib, Bigkinhibstd |
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_RL SmallPsat, BigPsat, ProcPsat |
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_RL SmallPsatrange, BigPsatrange, ProcPsatrange |
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_RL prochlPsat |
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_RL UniDzPsat, UniDzPsatrange |
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_RL depthdenit |
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_RL o2crit |
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stephd |
1.6 |
_RL denit_np, denit_no3 |
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_RL no3crit |
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jahn |
1.1 |
_RL ksatNH4fac, ksatNO2fac |
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_RL sig1,sig2,sig3 |
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_RL val_ksatsi |
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#ifdef OLD_GRAZE |
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_RL graze(npmax,nzmax) |
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_RL kgrazesat |
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_RL GrazeEffsmall, GrazeEffbig, GrazeFast, GrazeSlow |
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#else |
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_RL grazemax(nzmax) |
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_RL palat(npmax,nzmax) |
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_RL asseff(npmax,nzmax) |
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_RL kgrazesat |
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_RL GrazeEfflow, GrazeEffmod, GrazeEffhi |
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_RL GrazeFast, GrazeSlow |
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_RL palathi, palatlo |
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_RL phygrazmin |
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_RL ExportFracGraz(nzmax) |
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_RL ExGrazfracbig, ExGrazfracsmall |
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stephd |
1.2 |
_RL hollexp |
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jahn |
1.1 |
#endif |
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_RL ZoomortSmall, ZoomortBig, ZooexfacSmall, ZooexfacBig |
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stephd |
1.3 |
_RL ZoomortSmall2, ZoomortBig2 |
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jahn |
1.1 |
_RL val_R_SiP_diatom, val_R_NP_diaz, val_RFeP_diaz, |
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& val_R_NP, val_RFeP, val_R_PC, val_R_PICPOC |
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jahn |
1.7 |
#ifdef FIX_ZOO_QUOTAS |
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_RL val_R_SiP_zoo, val_R_NP_zoo, val_RFeP_zoo, val_R_PC_zoo |
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#endif |
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jahn |
1.1 |
_RL ngrowfac,ilight |
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_RL phymin |
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_RL PAR0 |
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_RL phyto_esd(npmax) |
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_RL phyto_vol(npmax) |
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_RL zoo_esd(nzmax) |
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_RL zoo_vol(nzmax) |
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#ifdef IRON_SED_SOURCE |
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_RL depthfesed, fesedflux, fesedflux_pcm |
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#endif |
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#ifdef PART_SCAV |
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_RL scav_rat, scav_inter, scav_exp |
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#endif |
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stephd |
1.5 |
#ifdef ALLOW_CDOM |
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_RL fraccdom, cdomdegrd, cdombleach, PARcdom |
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_RL rnp_cdom, rfep_cdom, rcp_cdom |
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_RL cdomcoeff |
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#endif |
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jahn |
1.1 |
INTEGER nsource(npmax) |
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INTEGER ngroups |
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COMMON/darwin_detritus/wp_sink,wn_sink,wfe_sink,wsi_sink, |
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& Kdop,Kdon,KdoFe,SmallSink,BigSink, |
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& Knita, Knitb |
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_RL wp_sink |
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_RL wn_sink |
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_RL wfe_sink |
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_RL wsi_sink |
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_RL Kdop |
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_RL Kdon |
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_RL KdoFe |
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_RL SmallSink |
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_RL BigSink |
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_RL Knita |
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_RL Knitb |
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_RL diaz_growfac |
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c k0, kc - light coefficients |
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COMMON/darwin_lightparam/ k0, kc, parfrac, parconv |
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_RL k0, kc, parfrac, parconv |
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c chlpmax - chl:p max ratio |
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c chlpmin - chl:p min ratio |
| 242 |
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c istar - photoadaptation light limit |
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COMMON/darwin_chlparam/ chlpmax, chlpmin, istar |
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_RL chlpmax, chlpmin, istar |
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COMMON/darwin_diags_param/ |
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& diver_thresh0, diver_thresh1, |
| 248 |
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& diver_thresh2, diver_thresh3, |
| 249 |
jahn |
1.4 |
& diver_thresh4, shannon_thresh |
| 250 |
jahn |
1.1 |
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| 251 |
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_RL diver_thresh0, diver_thresh1 |
| 252 |
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_RL diver_thresh2, diver_thresh3 |
| 253 |
jahn |
1.4 |
_RL diver_thresh4, shannon_thresh |
| 254 |
jahn |
1.1 |
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| 255 |
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#ifdef GEIDER |
| 256 |
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c ANNA geider by mQyield instead of alpha |
| 257 |
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COMMON/geider_vars/ |
| 258 |
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& pcmax, alphachl, chl2cmax, chl2cmin, |
| 259 |
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& mQyield,aphy_chl_ave, |
| 260 |
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& inhibcoef_geid, inhibcoef_geid_val, |
| 261 |
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#ifdef WAVEBANDS |
| 262 |
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& alpha_mean, |
| 263 |
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#endif |
| 264 |
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#ifdef DYNAMIC_CHL |
| 265 |
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& acclimtimescl, |
| 266 |
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#endif |
| 267 |
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c & Bigalphachl, Bigalphachlrange, |
| 268 |
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c & Smallalphachl, Smallalphachlrange, |
| 269 |
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& BigmQyield, BigmQyieldrange, |
| 270 |
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& SmallmQyield, SmallmQyieldrange, |
| 271 |
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& Bigchl2cmax, Bigchl2cmaxrange, |
| 272 |
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& Smallchl2cmax, Smallchl2cmaxrange |
| 273 |
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c _RL phychl(npmax) |
| 274 |
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_RL pcmax(npmax) |
| 275 |
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_RL alphachl(npmax) |
| 276 |
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_RL mQyield(npmax) |
| 277 |
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_RL chl2cmax(npmax) |
| 278 |
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_RL chl2cmin(npmax) |
| 279 |
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_RL inhibcoef_geid(npmax) |
| 280 |
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_RL inhibcoef_geid_val |
| 281 |
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#ifdef WAVEBANDS |
| 282 |
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_RL alpha_mean(npmax) |
| 283 |
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#endif |
| 284 |
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#ifdef DYNAMIC_CHL |
| 285 |
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_RL acclimtimescl |
| 286 |
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#endif |
| 287 |
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| 288 |
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| 289 |
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c _RL Bigalphachl, Bigalphachlrange, |
| 290 |
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c & Smallalphachl, Smallalphachlrange, |
| 291 |
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_RL BigmQyield, BigmQyieldrange, |
| 292 |
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& SmallmQyield, SmallmQyieldrange, |
| 293 |
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& Bigchl2cmax, Bigchl2cmaxrange, |
| 294 |
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& Smallchl2cmax, Smallchl2cmaxrange, |
| 295 |
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& aphy_chl_ave |
| 296 |
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#endif |
| 297 |
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#ifdef DAR_DIAG_CHL |
| 298 |
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COMMON/DAR_DIAG_CHL_VARS/ |
| 299 |
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& Geider_alphachl, Geider_chl2cmin, Geider_chl2cmax |
| 300 |
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_RL Geider_alphachl(npmax) |
| 301 |
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_RL Geider_chl2cmin(npmax) |
| 302 |
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_RL Geider_chl2cmax(npmax) |
| 303 |
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#endif /* DAR_DIAG_CHL */ |
| 304 |
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| 305 |
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| 306 |
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#ifdef ALLOW_CARBON |
| 307 |
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COMMON/darwin_carbon/ R_OP, wc_sink, wpic_sink, |
| 308 |
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& Kdoc, Kpremin_C, Kdissc |
| 309 |
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_RL R_OP |
| 310 |
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_RL wc_sink |
| 311 |
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_RL wpic_sink |
| 312 |
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_RL Kdoc |
| 313 |
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_RL Kpremin_C |
| 314 |
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_RL Kdissc |
| 315 |
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#endif |
| 316 |
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