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$Header: /u/gcmpack/MITgcm_contrib/darwin/doc/tag-index,v 1.179 2018/01/19 22:15:20 jahn Exp $ |
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$Name: $ |
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|
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Notes on tags used in darwin |
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============================ |
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|
| 7 |
ctrb_darwin_ckpt66o_20180209 |
| 8 |
o add S/R darwin_tr_register, so darwin can be run together with package cfc |
| 9 |
|
| 10 |
ctrb_darwin_ckpt66n_20180118 |
| 11 |
|
| 12 |
ctrb_darwin_ckpt66m_20171213 |
| 13 |
o fix bug in darwin_generate_zoo: ExGrazFracSmall and ExGrazFracBig were swapped |
| 14 |
|
| 15 |
ctrb_darwin_ckpt66l_20171025 |
| 16 |
|
| 17 |
ctrb_darwin_ckpt66k_20171025 |
| 18 |
|
| 19 |
ctrb_darwin_ckpt66j_20170815 |
| 20 |
|
| 21 |
ctrb_darwin_ckpt66i_20170718 |
| 22 |
|
| 23 |
ctrb_darwin_ckpt66h_20170602 |
| 24 |
|
| 25 |
ctrb_darwin_ckpt66g_20170424 |
| 26 |
|
| 27 |
ctrb_darwin_ckpt66f_20170407 |
| 28 |
|
| 29 |
ctrb_darwin_ckpt66e_20170314 |
| 30 |
|
| 31 |
ctrb_darwin_ckpt66d_20170214 |
| 32 |
|
| 33 |
ctrb_darwin_ckpt66c_20170121 |
| 34 |
|
| 35 |
ctrb_darwin_ckpt66b_20161219 |
| 36 |
|
| 37 |
ctrb_darwin_ckpt66a_20161020 |
| 38 |
|
| 39 |
ctrb_darwin_ckpt65z_20160929 |
| 40 |
|
| 41 |
ctrb_darwin_ckpt65y_20160801 |
| 42 |
|
| 43 |
ctrb_darwin_ckpt65x_20160612 |
| 44 |
|
| 45 |
ctrb_darwin_ckpt65w_20160512 |
| 46 |
|
| 47 |
ctrb_darwin_ckpt65v_20160409 |
| 48 |
|
| 49 |
ctrb_darwin_ckpt65u_20160315 |
| 50 |
|
| 51 |
ctrb_darwin_ckpt65t_20160221 |
| 52 |
|
| 53 |
ctrb_darwin_ckpt65s_20160114 |
| 54 |
o fix bug in radtrans sun model that broke zenith angle calculations; |
| 55 |
not relevant if defined DAR_RADTRANS_USE_MODEL_CALENDAR |
| 56 |
o use local noon for full zenith angle computation |
| 57 |
|
| 58 |
ctrb_darwin_ckpt65r_20151221 |
| 59 |
|
| 60 |
ctrb_darwin_ckpt65q_20151118 |
| 61 |
|
| 62 |
ctrb_darwin_ckpt65p_20151023 |
| 63 |
|
| 64 |
ctrb_darwin_ckpt65o_20150914 |
| 65 |
|
| 66 |
ctrb_darwin_ckpt65n_20150729 |
| 67 |
o bug fix for useDIAGNOSTICS=.FALSE. |
| 68 |
|
| 69 |
ctrb_darwin_ckpt65m_20150615 |
| 70 |
|
| 71 |
ctrb_darwin_ckpt65l_20150504 |
| 72 |
|
| 73 |
ctrb_darwin_ckpt65k_20150402 |
| 74 |
|
| 75 |
ctrb_darwin_ckpt65j_20150225 |
| 76 |
|
| 77 |
ctrb_darwin_ckpt65i_20150123 |
| 78 |
|
| 79 |
ctrb_darwin_ckpt65h_20141217 |
| 80 |
|
| 81 |
ctrb_darwin_ckpt65g_20141120 |
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|
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ctrb_darwin_ckpt65f_20141014 |
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|
| 85 |
ctrb_darwin_ckpt65e_20140929 |
| 86 |
|
| 87 |
ctrb_darwin_ckpt65d_20140915 |
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o do not update ptracers on open boundary |
| 89 |
|
| 90 |
ctrb_darwin_ckpt65c_20140830 |
| 91 |
o new output for baltic exp after obcs fixes to gchem_forcing_sep |
| 92 |
|
| 93 |
ctrb_darwin_ckpt65b_20140812 |
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|
| 95 |
ctrb_darwin_ckpt65a_20140728 |
| 96 |
|
| 97 |
ctrb_darwin_ckpt65_20140718 |
| 98 |
|
| 99 |
ctrb_darwin_ckpt64z_20140711 |
| 100 |
|
| 101 |
ctrb_darwin_ckpt64y_20140622 |
| 102 |
|
| 103 |
ctrb_darwin_ckpt64x_20140524 |
| 104 |
|
| 105 |
ctrb_darwin_ckpt64w_20140502 |
| 106 |
|
| 107 |
ctrb_darwin_ckpt64v_20140411 |
| 108 |
|
| 109 |
ctrb_darwin_ckpt64u_20140308 |
| 110 |
|
| 111 |
ctrb_darwin_ckpt64t_20140202 |
| 112 |
|
| 113 |
ctrb_darwin_ckpt64s_20140105 |
| 114 |
o use simpler (no level index) cumulative-time counter for timeave |
| 115 |
|
| 116 |
ctrb_darwin_ckpt64r_20131210 |
| 117 |
|
| 118 |
ctrb_darwin_ckpt64q_20131118 |
| 119 |
o remove kLev argument from tracer_meanarea |
| 120 |
|
| 121 |
ctrb_darwin_ckpt64p_20131024 |
| 122 |
|
| 123 |
ctrb_darwin_ckpt64o_20131024 |
| 124 |
|
| 125 |
ctrb_darwin_ckpt64n_20130826 |
| 126 |
|
| 127 |
ctrb_darwin_ckpt64m_20130820 |
| 128 |
|
| 129 |
ctrb_darwin_ckpt64l_20130806 |
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|
| 131 |
ctrb_darwin_ckpt64k_20130723 |
| 132 |
|
| 133 |
ctrb_darwin_ckpt64j_20130704 |
| 134 |
|
| 135 |
ctrb_darwin_ckpt64i_20130622 |
| 136 |
|
| 137 |
ctrb_darwin_ckpt64h_20130528 |
| 138 |
o initialize non-dynamic Chlorophyll like dynamic Chlorophyll |
| 139 |
o fix bug, write chlorophyll to pickup when using GEIDER without DYNAMIC_CHL |
| 140 |
|
| 141 |
ctrb_darwin_ckpt64g_20130503 |
| 142 |
o fix bug, diaz biomass should only be made smaller when initialized |
| 143 |
|
| 144 |
ctrb_darwin_ckpt64f_20130405 |
| 145 |
o add quadratic zooplankton mortality and make mortalities temperature dependent |
| 146 |
o make sure not to divide by zero in calculation of rhochl |
| 147 |
o add temperature function to zooplankton grazing (was only in OLD_GRAZE) |
| 148 |
|
| 149 |
ctrb_darwin_ckpt64e_20130305 |
| 150 |
o new baltic exp output after bug fix with noslip in seaice package |
| 151 |
|
| 152 |
ctrb_darwin_ckpt64d_20130219 |
| 153 |
o fixes for attenuation with dynamic chlorophyll and ninespecies initializaion |
| 154 |
|
| 155 |
ctrb_darwin_ckpt64c_20130120 |
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o switch baltic verification exp to labsea seaice settings |
| 157 |
|
| 158 |
ctrb_darwin_ckpt64b_20121224 |
| 159 |
|
| 160 |
ctrb_darwin_ckpt64a_20121116 |
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o fix units when using insol |
| 162 |
|
| 163 |
ctrb_darwin_ckpt64_20121012 |
| 164 |
|
| 165 |
ctrb_darwin_ckpt63s_20120908 |
| 166 |
|
| 167 |
ctrb_darwin_ckpt63r_20120817 |
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o more fixes for denit bug |
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|
| 170 |
ctrb_darwin_ckpt63q_20120731 |
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o bug fix, so denitrification will stop when NO3 below critical value |
| 172 |
|
| 173 |
ctrb_darwin_ckpt63p_20120707 |
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|
| 175 |
ctrb_darwin_ckpt63o_20120629 |
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|
| 177 |
ctrb_darwin_ckpt63n_20120604 |
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|
| 179 |
ctrb_darwin_ckpt63m_20120506 |
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|
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ctrb_darwin_ckpt63l_20120405 |
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|
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ctrb_darwin_ckpt63k_20120317 |
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|
| 185 |
ctrb_darwin_ckpt63j_20120217 |
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|
| 187 |
ctrb_darwin_ckpt63i_20120124 |
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|
| 189 |
ctrb_darwin_ckpt63h_20111230 |
| 190 |
|
| 191 |
ctrb_darwin_ckpt63g_20111220 |
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|
| 193 |
ctrb_darwin_ckpt63f_20111201 |
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|
| 195 |
ctrb_darwin_ckpt63e_20111107 |
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|
| 197 |
ctrb_darwin_ckpt63d_20111107 |
| 198 |
|
| 199 |
ctrb_darwin_ckpt63c_20111011 |
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|
| 201 |
ctrb_darwin_ckpt63b_20110830 |
| 202 |
|
| 203 |
ctrb_darwin_ckpt63a_20110804 |
| 204 |
|
| 205 |
ctrb_darwin_ckpt63_20110728 |
| 206 |
|
| 207 |
ctrb_darwin_ckpt62z_20110622 |
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|
| 209 |
ctrb_darwin_ckpt62y_20110526 |
| 210 |
|
| 211 |
ctrb_darwin_ckpt62x_20110513 |
| 212 |
o change darwin_baltic_76x72x24 output after obcs changes |
| 213 |
o additional bounds to temp/salt/dic for cases where pH solver blows up |
| 214 |
o fix so DYNCHL can work without WAVEBAND |
| 215 |
|
| 216 |
ctrb_darwin_ckpt62w_20110426 |
| 217 |
o add fix to two bugs in handling of water vapour pressure in carbonate chemistry |
| 218 |
and air-sea fluxes. Found by Val Bennington and Galen McKinley. |
| 219 |
Changes output of darwin_1d_carbon |
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|
| 221 |
ctrb_darwin_ckpt62v_20110412 |
| 222 |
o baseline for darwin2 |
| 223 |
o clean up headers (add SPECTRAL_SIZE.h, DARWIN_FIELDS.h) |
| 224 |
|
| 225 |
ctrb_darwin_ckpt62v_20110406 |
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o add explicit denitrification (and tidy up flx arrays) |
| 227 |
|
| 228 |
ctrb_darwin_ckpt62u_20110405 |
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o fix restart from pickup_dic with mdsioLocalDir in darwin |
| 230 |
|
| 231 |
ctrb_darwin_ckpt62t_20110305 |
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|
| 233 |
ctrb_darwin_ckpt62s_20110217 |
| 234 |
|
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ctrb_darwin_ckpt62r_20110124 |
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|
| 237 |
ctrb_darwin_ckpt62q_20110124 |
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o add particle absorption and scattering based on POP |
| 239 |
|
| 240 |
ctrb_darwin_ckpt62p_20101217 |
| 241 |
o phyto spectra now include backscattering coefficients. |
| 242 |
To revert to previous behaviour and use darwin_bbphy, |
| 243 |
#define DAR_NONSPECTRAL_BACKSCATTERING_RATIO |
| 244 |
o new verification experiment darwin_1d_radtrans |
| 245 |
o new output for darwin_baltic_76x72x24 after seaice changes |
| 246 |
|
| 247 |
ctrb_darwin_ckpt62o_20101125 |
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|
| 249 |
ctrb_darwin_ckpt62n_20101109 |
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|
| 251 |
ctrb_darwin_ckpt62m_20101024 |
| 252 |
o update darwin_baltic_76x72x24 results after seaice_growth changes |
| 253 |
|
| 254 |
ctrb_darwin_ckpt62l_20101006 |
| 255 |
|
| 256 |
ctrb_darwin_ckpt62k_20101005 |
| 257 |
|
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ctrb_darwin_ckpt62j_20100901 |
| 259 |
|
| 260 |
ctrb_darwin_ckpt62i_20100729 |
| 261 |
o dynamic Chlorophyll works |
| 262 |
|
| 263 |
ctrb_darwin_ckpt62h_20100707 |
| 264 |
o add full radiative transfer code |
| 265 |
|
| 266 |
ctrb_darwin_ckpt62g_20100609 |
| 267 |
o change default inhibcoef_geid_val back to zero |
| 268 |
|
| 269 |
ctrb_darwin_ckpt62f_20100522 |
| 270 |
o add aCDOM diagnostic: #define DAR_DIAG_ACDOM (available with WAVEBANDS) |
| 271 |
parameters in data.darwin: |
| 272 |
- darwin_diag_acdom_ilam :: waveband index (or wavelength) to diagnose |
| 273 |
o add option to compute aCDOM from Chlorophyll: #define DAR_CALC_ACDOM |
| 274 |
parameters in data.darwin: |
| 275 |
- darwin_Sdom :: spectral slope for wavelength dependence of aCDOM |
| 276 |
o fix reading of OASIM data (#define OASIM) regardless WAVEBANDS; |
| 277 |
parameters in data.darwin: |
| 278 |
- darwin_oasim_edFile, darwin_oasim_esFile :: file names |
| 279 |
- darwin_oasim_waves :: band center wavelengths in nm |
| 280 |
(when used without WAVEBANDS) |
| 281 |
units are W/m2 per waveband |
| 282 |
o add carbon diagnostics |
| 283 |
|
| 284 |
ctrb_darwin_ckpt62e_20100417 |
| 285 |
|
| 286 |
ctrb_darwin_ckpt62d_20100417 |
| 287 |
|
| 288 |
ctrb_darwin_ckpt62c_20100303 |
| 289 |
|
| 290 |
ctrb_darwin_ckpt62b_20100201 |
| 291 |
|
| 292 |
ctrb_darwin_ckpt62a_20100117 |
| 293 |
o replace DIAGNOSTICS_ADD2LIST by DIAGNOSTICS_ADDTOLIST |
| 294 |
|
| 295 |
ctrb_darwin_ckpt62_20091227 |
| 296 |
|
| 297 |
ctrb_darwin_ckpt61z_20091207 |
| 298 |
|
| 299 |
ctrb_darwin_ckpt61y_20091120 |
| 300 |
o darwin_baltic_76x72x24: set SEAICE_clipVelocities = .FALSE. |
| 301 |
|
| 302 |
ctrb_darwin_ckpt61x_20091024 |
| 303 |
|
| 304 |
ctrb_darwin_ckpt61w_20091024 |
| 305 |
|
| 306 |
ctrb_darwin_ckpt61v_20091024 |
| 307 |
o changes so will work with either old model or quota model |
| 308 |
o set default to old version of temperature function |
| 309 |
o seperate temperature function into seperate subroutine |
| 310 |
add new version of temperature function: pseudo-Arrhenius function, |
| 311 |
and include this for zooplankton and remineralization |
| 312 |
o add iron sedimentary source that is function of sinking POC |
| 313 |
(based on Elrod et al, GRL 2004) |
| 314 |
o tidy up NFixP diagnostics |
| 315 |
o include denitrification and additional N-fix code (from Fanny Monteiro) |
| 316 |
o add iron sedimentation flux and particle dependent iron scavenging |
| 317 |
|
| 318 |
ctrb_darwin_ckpt61u_20090825 |
| 319 |
o upgrade to checkpoint61u of MITgcm |
| 320 |
o add ability to read OASIM spectral data. add placeholder for SPECTRAL.h |
| 321 |
|
| 322 |
ctrb_darwin_ckpt61t_20090820 |
| 323 |
o upgrade to checkpoint61t of MITgcm |
| 324 |
|
| 325 |
ctrb_darwin_ckpt61s_20090630 |
| 326 |
o upgrade to checkpoint61s of MITgcm |
| 327 |
o add package longstep |
| 328 |
|
| 329 |
ctrb_darwin_ckpt61r_20090626 |
| 330 |
o upgrade to checkpoint61r of MITgcm |
| 331 |
|
| 332 |
ctrb_darwin_ckpt61q_20090626 |
| 333 |
o upgrade to checkpoint61q of MITgcm |
| 334 |
|
| 335 |
ctrb_darwin_ckpt61p_20090610 |
| 336 |
o upgrade to checkpoint61p of MITgcm |
| 337 |
|
| 338 |
ctrb_darwin_ckpt61o_20090610 |
| 339 |
o two-species setup (no random choices): one big, one small |
| 340 |
use #define TWO_SPECIES_SETUP |
| 341 |
o new files and modifications for air-sea exchange of CO2 and O2 |
| 342 |
(still in development) |
| 343 |
|
| 344 |
ctrb_darwin_ckpt61o_20090527 |
| 345 |
o upgrade to checkpoint61o of MITgcm |
| 346 |
|
| 347 |
ctrb_darwin_ckpt61n_20090519 |
| 348 |
o add PIC cycling to carbon part. |
| 349 |
o add possiblity of coccolithophores |
| 350 |
o adding carbon/o2/alkalinity (only soft tissue at this stage) |
| 351 |
|
| 352 |
ctrb_darwin_ckpt61n_20090513 |
| 353 |
o upgrade to checkpoint61n of MITgcm |
| 354 |
|
| 355 |
ctrb_darwin_ckpt61m_20090430 |
| 356 |
o upgrade to checkpoint61m of MITgcm |
| 357 |
- change macros *_R4 -> *_RS and *_R8 -> *_RL |
| 358 |
|
| 359 |
ctrb_darwin_ckpt61l_20090408 |
| 360 |
o upgrade to checkpoint61l of MITgcm |
| 361 |
- darwin_baltic_76x72x23 uses new finite-volue seaice solver |
| 362 |
- gfortran tests trap floating point exceptions |
| 363 |
|
| 364 |
ctrb_darwin_ckpt61k_20090312 |
| 365 |
o upgrade to checkpoint61k of MITgcm |
| 366 |
|
| 367 |
ctrb_darwin_ckpt61i_20090312 |
| 368 |
o add chlorophyll diagnostics (Geider, Doney, Cloern) |
| 369 |
o add daily-averaged and stored PAR (ALLOW_PAR_DAY) |
| 370 |
o move darwin options to new header DARWIN_OPTIONS.h |
| 371 |
|
| 372 |
ctrb_darwin_ckpt61i_20090224 |
| 373 |
o upgrade to checkpoint61i of MITgcm |
| 374 |
|
| 375 |
ctrb_darwin_ckpt61h_20090224 |
| 376 |
o upgrade to checkpoint61h of MITgcm |
| 377 |
- rename thetaMin,phiMin -> xgOrigin,ygOrigin |
| 378 |
|
| 379 |
ctrb_darwin_ckpt61d_20081212 |
| 380 |
o add new code to allow for a flux of nutrients to be read in from files; |
| 381 |
this is especially for a 1-D setup |
| 382 |
|
| 383 |
ctrb_darwin_ckpt61d_20081013 |
| 384 |
o upgrade to checkpoint61d of MITgcm |
| 385 |
o DAR_cons_unit[1-4] get separate common block |
| 386 |
|
| 387 |
ctrb_darwin_ckpt61b_20080822 |
| 388 |
o upgrade to checkpoint61b of MITgcm |
| 389 |
|
| 390 |
ctrb_darwin_ckpt61_20080822 |
| 391 |
o add code to relax nutrients (needed for 1-D version) |
| 392 |
o add waveband dependence of light attenuation and absorption, |
| 393 |
- NOTE: need to have geider turned on too |
| 394 |
o add geider chl:c ratio and growth rate dependence, |
| 395 |
- no photo-inhibition at this point |
| 396 |
o make number of phytoplankton species flexible (at compile time) |
| 397 |
- DARWIN_SIZE defines location of darwin fields in Ptracer |
| 398 |
|
| 399 |
ctrb_darwin_ckpt61_20080624 |
| 400 |
o upgrade to checkpoint61 of MITgcm |
| 401 |
|
| 402 |
ctrb_darwin_ckpt60_20080619 |
| 403 |
o upgrade to checkpoint60 of MITgcm |
| 404 |
|
| 405 |
ctrb_darwin_ckpt59r_20080606 |
| 406 |
o upgrade to checkpoint59r of MITgcm |
| 407 |
|
| 408 |
ctrb_darwin_ckpt59q_20080605 |
| 409 |
o upgrade to checkpoint59q of MITgcm |
| 410 |
- verification/darwin_baltic_76x72x24: fix topography for obcs |
| 411 |
|
| 412 |
ctrb_darwin_ckpt59p_20080604 |
| 413 |
o upgrade to checkpoint59p of MITgcm |
| 414 |
- introduces data.darwin; the following parameters have been moved |
| 415 |
from data.gchem to data.darwin: |
| 416 |
iceFile -> darwin_iceFile |
| 417 |
IronFile -> darwin_ironFile |
| 418 |
Filename1 -> darwin_PARFile |
| 419 |
Filename2 -> darwin_nutWVelFile |
| 420 |
gchem_int1 -> darwin_seed |
| 421 |
gchem_ForcingPeriod -> darwinForcingPeriod |
| 422 |
gchem_ForcingCycle -> gchem_ForcingCycle |
| 423 |
|
| 424 |
ctrb_darwin_ckpt59o_20080602 |
| 425 |
o upgrade to checkpoint59o of MITgcm |
| 426 |
|
| 427 |
ctrb_darwin_ckpt59n_20080424 |
| 428 |
o verification/darwin_baltic_76x72x24: change from OLDSEED to PORT_RAND |
| 429 |
o upgrade to checkpoint59n of MITgcm |
| 430 |
- introduces PTRACERS_PARAMS.h and PTRACERS_FIELDS.h |
| 431 |
- changes in obcs and seaice |
| 432 |
- pickupStriclyMatch |
| 433 |
|
| 434 |
ctrb_darwin_ckpt59i_20080226 |
| 435 |
o load forcing fields if gchem_ForcingPeriod.NE.0 (instead of periodicExternalForcing) |
| 436 |
|
| 437 |
cp59i_noironwithexf |
| 438 |
o add darwin global verification experiment |
| 439 |
o change default phymin to 1e-20 |
| 440 |
o change floating point constants to _d |
| 441 |
o portable random number generator |
| 442 |
|
| 443 |
cp59i |
| 444 |
o initial checkin. Works with MITgcm checkpoint59i |
| 445 |
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