| 1 |
\documentclass[letterpaper,10pt]{article} |
| 2 |
\usepackage[margin=10mm,bmargin=20mm]{geometry} |
| 3 |
\usepackage{amsmath} |
| 4 |
|
| 5 |
\newcommand{\dy}{\mathrm{day}} |
| 6 |
\newcommand{\yr}{\mathrm{y}} |
| 7 |
\newcommand{\uM}{\mu\mathrm{M}} |
| 8 |
\renewcommand{\P}{\mathrm{P}} |
| 9 |
\newcommand{\uEin}{\mu\text{Ein}} |
| 10 |
\newcommand{\m}{\mathrm{m}} |
| 11 |
\newcommand{\s}{\mathrm{s}} |
| 12 |
|
| 13 |
|
| 14 |
\newcommand{\pcm}[1]{P^C_{m#1}} |
| 15 |
\newcommand{\pcmax}[1]{P^C_{\textrm{MAX}#1}} |
| 16 |
\newcommand{\pcarbon}{P^C} |
| 17 |
\newcommand{\chltoc}{\theta} |
| 18 |
\newcommand{\chltocmax}{\theta^{\textrm{max}}} |
| 19 |
\newcommand{\chltocmin}{\theta^{\textrm{min}}} |
| 20 |
\newcommand{\alphachl}{\alpha^{\textrm{Chl}}} |
| 21 |
\newcommand{\mQyield}{\mathrm{mQ}^{\textrm{yield}}} |
| 22 |
\newcommand{\RPC}{R^{PC}} |
| 23 |
\newcommand{\phychl}{\mathit{Chl}} |
| 24 |
\newcommand{\E}{\mathrm{E}} |
| 25 |
\newcommand{\aphychlave}{A^{\mathrm{phy}}_{\mathrm{Chl,ave}}} |
| 26 |
|
| 27 |
\begin{document} |
| 28 |
\thispagestyle{empty} |
| 29 |
|
| 30 |
\section*{Darwin model parameters and default values as of checkpoint61} |
| 31 |
|
| 32 |
\noindent |
| 33 |
\begin{tabular}{llllllllll} |
| 34 |
paper & variable & fixed & values \\\hline |
| 35 |
$\mu_{max_j}$ & mu & Big/Smallgrow & $1/(0.4\,\dy)$ (big) & $1/(0.7\,\dy)$ (small) & $\times 1/2$ (diatom) \\ |
| 36 |
$m^P_j$ & mortphy & Big/Smallmort & $1/(10\,\dy)$ \\ |
| 37 |
$\lambda_{mp_{ij}}$ & ExportFracP & Big/Smallexport & 0.5 (big) & 0.2 (small) \\ |
| 38 |
$w^P_j$ & wsink & Big/Smallsink & 0.5 m/day (big) & 0 (small) \\ |
| 39 |
& & phymin & 1E-20 $\uM\,\P$ \\ |
| 40 |
\hline |
| 41 |
$1/\tau_1$ & phytoTempCoeff & tempcoeff1 & 1/3 \\ |
| 42 |
$B$ & phytoTempExp2 & tempcoeff2\_big/small & 0.0003 (big) & 0.001 (small) \\ |
| 43 |
$A$ & phytoTempExp1 & tempcoeff3 & 1.04 \\ |
| 44 |
$T_o$ & phytoTempOptimum & tempmax & $30-32x$ \\ |
| 45 |
$\tau_2$ & & tempnorm & 0.3 \\ |
| 46 |
$C$ & phytoDecayPower & tempdecay & 4.0 \\ |
| 47 |
\hline |
| 48 |
$10 k_{par}$ & ksatPAR & Big/smallksatpar(std) & $0.12\pm0.06X$ (big) & $0.12\pm0.20X$ (small) & $\m^2\,\s/\uEin$ \\ |
| 49 |
$10^3 k_{inhib}$ & kinhib & Big/smallkinhib(std) & $1.0\pm0.05X$ (big) & $6.0\pm0.10X$ (small) & $\m^2\,\s/\uEin$ \\ |
| 50 |
& & parfrac & $0.4$ & W PAR/W sw\\ |
| 51 |
& & parconv & $0.2174^{-1}$ & uEin W$^{-1}$ s$^{-1}$ \\ |
| 52 |
\hline |
| 53 |
$\kappa_{Si_{ij}}$ & ksatSi & val\_ksatsi & 1 $\uM\,\P$ \\ |
| 54 |
$\kappa_{PO4_{ij}}$ & ksatPO4 & Big/Small/ProcPsat & $0.035+0.02x$ (big) & $0.015+0.02x$ (small) & $0.01+0.005x$ (Proc) \\ |
| 55 |
$\kappa_{Fe_{ij}}$ & ksatFe & & ksatPO4*R\_FeP \\ |
| 56 |
$\kappa_{IN}$ & ksatNO3 & & ksatPO4*R\_NP \\ |
| 57 |
$\kappa_{IN}^{\#1}$ & ksatNO2 & & ksatNO3*ksatNO2fac \\ |
| 58 |
$\kappa_{NH4}$ & ksatNH4 & & ksatNO3*ksatNH4fac \\ |
| 59 |
& & ksatNO2fac & 1.0 \\ |
| 60 |
& & ksatNH4fac & 0.5 \\ |
| 61 |
$\psi$ & & sig1 & 4.6 $(\uM\,\P)^{-1}$ \\ |
| 62 |
\hline |
| 63 |
$M_{ij}$ & R\_SiP & val\_R\_SiP\_diatom & 0 & 16 (diatom) \\ |
| 64 |
$M_{ij}$ & R\_NP & val\_R\_NP(\_diazo) & 16 & 40 (diazo) \\ |
| 65 |
$M_{ij}$ & R\_FeP & val\_RFeP(\_diazo) & 1E-3 & 7.5E-3 (diazo) \\ |
| 66 |
\hline |
| 67 |
$g_{max}$ & grazemax & GrazeFast & $(2\,\dy)^{-1}$ \\ |
| 68 |
$\eta_{j k}$ & palat & palathi/lo & 1.0 (same sz.) & 0.2 (diff. size) & $\times 0.7$ (diatom) \\ |
| 69 |
$\zeta_{j k}$ & asseff & GrazeEffhi/lo & 0.5 (same sz.) & 0.7 (sm.phy) & 0.2 (lg.phy) \\ |
| 70 |
$\kappa^P_k$ & & kgrazesat & 0.1 $\uM\,\P$ \\ |
| 71 |
& & phygrazmin & 1E-10 $\uM\,\P$ \\ |
| 72 |
$m^Z_j$ & mortzoo & ZoomortBig/Small & $(30\,\dy)^{-1}$ \\ |
| 73 |
$\lambda_{g_{ijk}}$ & ExportFracGraz & ExGrazfracbig/small & 0.8 \\ |
| 74 |
$\lambda_{mz_{ik}}$ & ExportFracZ & zooexfacBig/Small & 0.7 (big) & 0.2 (small) \\ |
| 75 |
\hline |
| 76 |
$r_{DOP}$, & $r_{DON}$, $r_{DOFe}$ & Kdop, Kdon, KdoFe & $1/(100\,\dy)$ \\ |
| 77 |
% $r_{DON}$ & & Kdon & $1/(100\,\dy)$ \\ |
| 78 |
% $r_{DOFe}$ & & KdoFe & $1/(100\,\dy)$ \\ |
| 79 |
$r_{POP}$, & $r_{PON}$, $r_{POFe}$ & Kpremin\_P/N/Fe & $1/(50\,\dy)$ \\ |
| 80 |
% $r_{PON}$ & & Kpremin\_N & ./. \\ |
| 81 |
% $r_{POFe}$ & & Kpremin\_Fe & ./. \\ |
| 82 |
$r_{POSi}$ & & Kpremin\_Si & $1/(300\,\dy)$ \\ |
| 83 |
$w_{POP}$, & ... & wp\_sink, ... & 10 m/day \\ |
| 84 |
% $w_{PON}$ & & wn\_sink & ./. \\ |
| 85 |
% $w_{POFe}$ & & wfe\_sink & ./. \\ |
| 86 |
% $w_{POSi}$ & & wsi\_sink & ./. \\ |
| 87 |
\hline |
| 88 |
$\alpha$ & & alpfe & 0.04 \\ |
| 89 |
$c_{\text{scav}}$ & & scav & 0.4$\,\yr^{-1}$ \\ |
| 90 |
$L_{tot}$ & & ligand\_tot & 1E-3$\,\uM\,\P$ \\ |
| 91 |
$L_{stab}$ & & ligand\_stab & 2E5$\,(\uM\,\P)^{-1}$ \\ |
| 92 |
$Fe'_{max}$ & & freefemax & 0.4E-3$\,\uM\,\P$ \\ |
| 93 |
\hline |
| 94 |
$\zeta_{NO2}^0$ & & knita & $1/(0.5\,\dy)$ \\ |
| 95 |
$\zeta_{NO3}^0$ & & knitb & $1/(10\,\dy)$ \\ |
| 96 |
$I_0$ & & PAR0 & $10\,\uEin\,\m^{-2}\,\s^{-1}$ \\ |
| 97 |
\hline |
| 98 |
\hline |
| 99 |
%\end{tabular} |
| 100 |
% |
| 101 |
%\vfill |
| 102 |
%\goodbreak |
| 103 |
% |
| 104 |
%\noindent\textbf{Geider:}\nobreak |
| 105 |
% |
| 106 |
% aphy_chl_ave (ie. x chla gives absorption m-1) |
| 107 |
% |
| 108 |
%\noindent |
| 109 |
%\begin{tabular}{llllllllll} |
| 110 |
% paper & variable & fixed & values \\\hline |
| 111 |
$\pcmax{j}$ & pcmax & Big/Smallgrow & $(0.4\,\dy)^{-1}$ (big) & $(0.7\,\dy)^{-1}$ (small) & $\times 2^{-1}$ (diatom) \\ %& $\times 2^{-1}$ (diazo) \\ |
| 112 |
& & & & & $\times 2^{-1}$ (diazo) \\ |
| 113 |
% $\alphachl_j$ & alphachl & & & mmol C (uEin/m-2)$^{-1}$ (mg Chl)$^{-1}$ \\ |
| 114 |
% & & & & mmol C (uEin/m-2)$^{-1}$ (mg Chl)$^{-1}$ \\ |
| 115 |
% & & & & mmol C (uEin/m-2)$^{-1}$ (mg Chl)$^{-1}$ \\ |
| 116 |
% & & & & mmol C (uEin/m-2)$^{-1}$ (mg Chl)$^{-1}$ \\ |
| 117 |
$\mQyield_j$ & mQyield & Big/smallmQyield & $(3+4x)$E-5 (big) & $(5+10x)$E-5 (small) & mmol C uEin$^{-1}$ \\ |
| 118 |
$\aphychlave$ & & aphy\_chl\_ave & 0.02 & m$^2$ (mg Chl)$^{-1}$ \\ |
| 119 |
$\chltocmax_j$ & chl2cmax & Big/smallchl2cmax & $0.5+0.3x$ (big) & $0.2+0.3x$ (small) & mg Chl (mmol C)$^{-1}$ \\ |
| 120 |
$\RPC_j$ & R\_PC & val\_R\_PC & 120 & mmol C/mmol P\\ |
| 121 |
\hline |
| 122 |
\end{tabular} |
| 123 |
|
| 124 |
where $x$ stands for uniformly distributed random numbers in $[0,1[$ and $X$ for normally distributed ones. |
| 125 |
|
| 126 |
|
| 127 |
\begin{tabular}{llllllllll} |
| 128 |
fixed & value \\\hline |
| 129 |
diver\_thresh0 & $10^{-12}\,\uM\,\P$ & threshold for $P_\mathrm{tot}$ for all Diver diagnostics \\ |
| 130 |
diver\_thresh1 & $10^{-8}\,\uM\,\P$ & threshold for $P_j$ for Diver1 \\ |
| 131 |
diver\_thresh2 & $10^{-3}$ & threshold for $P_j/P_{\mathrm{tot}}$ for Diver2 \\ |
| 132 |
diver\_thresh3 & $0.999$ & biomass fraction of abundant species for Diver3 \\ |
| 133 |
diver\_thresh4 & $10^{-5}$ & threshold for $P_j/P_{\mathrm{max}}$ for Diver4 \\ |
| 134 |
\end{tabular} |
| 135 |
|
| 136 |
\end{document} |
| 137 |
\endinput |
| 138 |
|
| 139 |
paper & variable & |
| 140 |
& & |
| 141 |
& & |
| 142 |
& & |
| 143 |
& & |
| 144 |
& & |
| 145 |
|
| 146 |
|
| 147 |
#ifdef DAR_DIAG_DIVER |
| 148 |
c only look at grid point with a minimum biomass |
| 149 |
diver_thresh0=1 _d -12 |
| 150 |
c diver1 - if any type greater than |
| 151 |
diver_thresh1=1 _d -8 |
| 152 |
c diver2 - if more than this proportion of total biomass |
| 153 |
diver_thresh2=1 _d -3 |
| 154 |
c diver3 - fraction of biomass to count |
| 155 |
diver_thresh3=.999 _d 0 |
| 156 |
c diver4 - fraction of maximum species |
| 157 |
diver_thresh4=1 _d -5 |
| 158 |
#endif |
| 159 |
|
| 160 |
|
Parent Directory
| 
Revision Log
| 
Revision Graph