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jahn |
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\documentclass[letterpaper,10pt]{article} |
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\usepackage[margin=10mm,bmargin=20mm]{geometry} |
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\usepackage{amsmath} |
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\newcommand{\dy}{\mathrm{day}} |
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\newcommand{\yr}{\mathrm{y}} |
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\newcommand{\uM}{\mu\mathrm{M}} |
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\renewcommand{\P}{\mathrm{P}} |
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\newcommand{\uEin}{\mu\text{Ein}} |
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\newcommand{\m}{\mathrm{m}} |
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\newcommand{\s}{\mathrm{s}} |
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\newcommand{\pcm}[1]{P^C_{m#1}} |
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\newcommand{\pcmax}[1]{P^C_{\textrm{MAX}#1}} |
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\newcommand{\pcarbon}{P^C} |
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\newcommand{\chltoc}{\theta} |
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\newcommand{\chltocmax}{\theta^{\textrm{max}}} |
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\newcommand{\chltocmin}{\theta^{\textrm{min}}} |
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\newcommand{\alphachl}{\alpha^{\textrm{Chl}}} |
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\newcommand{\mQyield}{\mathrm{mQ}^{\textrm{yield}}} |
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\newcommand{\RPC}{R^{PC}} |
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\newcommand{\phychl}{\mathit{Chl}} |
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\newcommand{\E}{\mathrm{E}} |
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\newcommand{\aphychlave}{A^{\mathrm{phy}}_{\mathrm{Chl,ave}}} |
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\begin{document} |
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\thispagestyle{empty} |
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\section*{Darwin model parameters and default values as of checkpoint61} |
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\noindent |
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\begin{tabular}{llllllllll} |
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paper & variable & fixed & values \\\hline |
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$\mu_{max_j}$ & mu & Big/Smallgrow & $1/(0.4\,\dy)$ (big) & $1/(0.7\,\dy)$ (small) & $\times 1/2$ (diatom) \\ |
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$m^P_j$ & mortphy & Big/Smallmort & $1/(10\,\dy)$ \\ |
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$\lambda_{mp_{ij}}$ & ExportFracP & Big/Smallexport & 0.5 (big) & 0.2 (small) \\ |
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$w^P_j$ & wsink & Big/Smallsink & 0.5 m/day (big) & 0 (small) \\ |
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& & phymin & 1E-20 $\uM\,\P$ \\ |
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\hline |
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$1/\tau_1$ & phytoTempCoeff & tempcoeff1 & 1/3 \\ |
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$B$ & phytoTempExp2 & tempcoeff2\_big/small & 0.0003 (big) & 0.001 (small) \\ |
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$A$ & phytoTempExp1 & tempcoeff3 & 1.04 \\ |
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$T_o$ & phytoTempOptimum & tempmax & $30-32x$ \\ |
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$\tau_2$ & & tempnorm & 0.3 \\ |
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$C$ & phytoDecayPower & tempdecay & 4.0 \\ |
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\hline |
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$10 k_{par}$ & ksatPAR & Big/smallksatpar(std) & $0.12\pm0.06X$ (big) & $0.12\pm0.20X$ (small) & $\m^2\,\s/\uEin$ \\ |
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$10^3 k_{inhib}$ & kinhib & Big/smallkinhib(std) & $1.0\pm0.05X$ (big) & $6.0\pm0.10X$ (small) & $\m^2\,\s/\uEin$ \\ |
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& & parfrac & $0.4$ & W PAR/W sw\\ |
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& & parconv & $0.2174^{-1}$ & uEin W$^{-1}$ s$^{-1}$ \\ |
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\hline |
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$\kappa_{Si_{ij}}$ & ksatSi & val\_ksatsi & 1 $\uM\,\P$ \\ |
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$\kappa_{PO4_{ij}}$ & ksatPO4 & Big/Small/ProcPsat & $0.035+0.02x$ (big) & $0.015+0.02x$ (small) & $0.01+0.005x$ (Proc) \\ |
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$\kappa_{Fe_{ij}}$ & ksatFe & & ksatPO4*R\_FeP \\ |
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$\kappa_{IN}$ & ksatNO3 & & ksatPO4*R\_NP \\ |
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$\kappa_{IN}^{\#1}$ & ksatNO2 & & ksatNO3*ksatNO2fac \\ |
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$\kappa_{NH4}$ & ksatNH4 & & ksatNO3*ksatNH4fac \\ |
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& & ksatNO2fac & 1.0 \\ |
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& & ksatNH4fac & 0.5 \\ |
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$\psi$ & & sig1 & 4.6 $(\uM\,\P)^{-1}$ \\ |
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\hline |
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$M_{ij}$ & R\_SiP & val\_R\_SiP\_diatom & 0 & 16 (diatom) \\ |
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$M_{ij}$ & R\_NP & val\_R\_NP(\_diazo) & 16 & 40 (diazo) \\ |
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$M_{ij}$ & R\_FeP & val\_RFeP(\_diazo) & 1E-3 & 7.5E-3 (diazo) \\ |
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\hline |
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$g_{max}$ & grazemax & GrazeFast & $(2\,\dy)^{-1}$ \\ |
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$\eta_{j k}$ & palat & palathi/lo & 1.0 (same sz.) & 0.2 (diff. size) & $\times 0.7$ (diatom) \\ |
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$\zeta_{j k}$ & asseff & GrazeEffhi/lo & 0.5 (same sz.) & 0.7 (sm.phy) & 0.2 (lg.phy) \\ |
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$\kappa^P_k$ & & kgrazesat & 0.1 $\uM\,\P$ \\ |
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& & phygrazmin & 1E-10 $\uM\,\P$ \\ |
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$m^Z_j$ & mortzoo & ZoomortBig/Small & $(30\,\dy)^{-1}$ \\ |
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$\lambda_{g_{ijk}}$ & ExportFracGraz & ExGrazfracbig/small & 0.8 \\ |
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$\lambda_{mz_{ik}}$ & ExportFracZ & zooexfacBig/Small & 0.7 (big) & 0.2 (small) \\ |
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\hline |
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$r_{DOP}$, & $r_{DON}$, $r_{DOFe}$ & Kdop, Kdon, KdoFe & $1/(100\,\dy)$ \\ |
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% $r_{DON}$ & & Kdon & $1/(100\,\dy)$ \\ |
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% $r_{DOFe}$ & & KdoFe & $1/(100\,\dy)$ \\ |
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$r_{POP}$, & $r_{PON}$, $r_{POFe}$ & Kpremin\_P/N/Fe & $1/(50\,\dy)$ \\ |
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% $r_{PON}$ & & Kpremin\_N & ./. \\ |
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% $r_{POFe}$ & & Kpremin\_Fe & ./. \\ |
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$r_{POSi}$ & & Kpremin\_Si & $1/(300\,\dy)$ \\ |
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$w_{POP}$, & ... & wp\_sink, ... & 10 m/day \\ |
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% $w_{PON}$ & & wn\_sink & ./. \\ |
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% $w_{POFe}$ & & wfe\_sink & ./. \\ |
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% $w_{POSi}$ & & wsi\_sink & ./. \\ |
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\hline |
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$\alpha$ & & alpfe & 0.04 \\ |
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$c_{\text{scav}}$ & & scav & 0.4$\,\yr^{-1}$ \\ |
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$L_{tot}$ & & ligand\_tot & 1E-3$\,\uM\,\P$ \\ |
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$L_{stab}$ & & ligand\_stab & 2E5$\,(\uM\,\P)^{-1}$ \\ |
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$Fe'_{max}$ & & freefemax & 0.4E-3$\,\uM\,\P$ \\ |
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\hline |
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$\zeta_{NO2}^0$ & & knita & $1/(0.5\,\dy)$ \\ |
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$\zeta_{NO3}^0$ & & knitb & $1/(10\,\dy)$ \\ |
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$I_0$ & & PAR0 & $10\,\uEin\,\m^{-2}\,\s^{-1}$ \\ |
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\hline |
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\hline |
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%\end{tabular} |
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% |
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%\vfill |
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%\goodbreak |
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% |
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%\noindent\textbf{Geider:}\nobreak |
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% |
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% aphy_chl_ave (ie. x chla gives absorption m-1) |
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% |
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%\noindent |
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%\begin{tabular}{llllllllll} |
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% paper & variable & fixed & values \\\hline |
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$\pcmax{j}$ & pcmax & Big/Smallgrow & $(0.4\,\dy)^{-1}$ (big) & $(0.7\,\dy)^{-1}$ (small) & $\times 2^{-1}$ (diatom) \\ %& $\times 2^{-1}$ (diazo) \\ |
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& & & & & $\times 2^{-1}$ (diazo) \\ |
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% $\alphachl_j$ & alphachl & & & mmol C (uEin/m-2)$^{-1}$ (mg Chl)$^{-1}$ \\ |
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% & & & & mmol C (uEin/m-2)$^{-1}$ (mg Chl)$^{-1}$ \\ |
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% & & & & mmol C (uEin/m-2)$^{-1}$ (mg Chl)$^{-1}$ \\ |
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% & & & & mmol C (uEin/m-2)$^{-1}$ (mg Chl)$^{-1}$ \\ |
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$\mQyield_j$ & mQyield & Big/smallmQyield & $(3+4x)$E-5 (big) & $(5+10x)$E-5 (small) & mmol C uEin$^{-1}$ \\ |
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$\aphychlave$ & & aphy\_chl\_ave & 0.02 & m$^2$ (mg Chl)$^{-1}$ \\ |
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$\chltocmax_j$ & chl2cmax & Big/smallchl2cmax & $0.5+0.3x$ (big) & $0.2+0.3x$ (small) & mg Chl (mmol C)$^{-1}$ \\ |
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$\RPC_j$ & R\_PC & val\_R\_PC & 120 & mmol C/mmol P\\ |
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\hline |
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\end{tabular} |
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where $x$ stands for uniformly distributed random numbers in $[0,1[$ and $X$ for normally distributed ones. |
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\begin{tabular}{llllllllll} |
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fixed & value \\\hline |
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diver\_thresh0 & $10^{-12}\,\uM\,\P$ & threshold for $P_\mathrm{tot}$ for all Diver diagnostics \\ |
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diver\_thresh1 & $10^{-8}\,\uM\,\P$ & threshold for $P_j$ for Diver1 \\ |
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diver\_thresh2 & $10^{-3}$ & threshold for $P_j/P_{\mathrm{tot}}$ for Diver2 \\ |
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diver\_thresh3 & $0.999$ & biomass fraction of abundant species for Diver3 \\ |
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diver\_thresh4 & $10^{-5}$ & threshold for $P_j/P_{\mathrm{max}}$ for Diver4 \\ |
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\end{tabular} |
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\end{document} |
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\endinput |
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paper & variable & |
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& & |
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& & |
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& & |
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& & |
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& & |
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#ifdef DAR_DIAG_DIVER |
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c only look at grid point with a minimum biomass |
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diver_thresh0=1 _d -12 |
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c diver1 - if any type greater than |
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diver_thresh1=1 _d -8 |
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c diver2 - if more than this proportion of total biomass |
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diver_thresh2=1 _d -3 |
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c diver3 - fraction of biomass to count |
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diver_thresh3=.999 _d 0 |
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c diver4 - fraction of maximum species |
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diver_thresh4=1 _d -5 |
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#endif |
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