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1 heimbach 1.1 @Techreport{adcroft02,
2     author = {Alistair Adcroft and Jean-Michel Campin and Patrick
3     Heimbach and Christopher Hill and John Marshall},
4     title = {{MITgcm} {R}elease 1 {M}anual},
5     institution = {{MIT}/{EAPS}},
6     year = {2002},
7     type = {Online documentation},
8     number = {~},
9     address = {Cambridge, MA 02139, USA},
10     note =
11     {{\url{http://mitgcm.org/sealion/online_documents/manual.html}}},
12     }
13    
14     @Article{adcroft04,
15     author = {Alistair Adcroft and Jean-Michel Campin},
16     title = {Rescaled Height Coordinates for Accurate
17     Representation of Free-Surface Flows in Ocean
18     Circulation Models},
19     journal = omg,
20     year = 2004,
21     volume = 7,
22     number = {3-4},
23     pages = {269--284}
24     }
25    
26     @Article{adcroft04:_cubed_sphere,
27     author = {Alistair Adcroft and Jean-Michel Campin and
28     Christopher N. Hill and John C. Marshall},
29     title = {Implementation of an Atmosphere-Ocean General
30     Circulation Model on the Expanded Spherical Cube},
31     journal = mwr,
32     year = 2004,
33     volume = 132,
34     number = 12,
35     pages = {2845--2863}
36     }
37    
38 jmc 1.5 @inproceedings{adcroft04:_ecmwf,
39     author = {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
40     and P. Heimbach},
41     title = {Overview of the Formulation and Numerics of the {MIT GCM}},
42     booktitle = {Proceedings of the ECMWF seminar series on Numerical Methods,
43     Recent developments in numerical methods for atmosphere and
44     ocean modelling},
45     year = 2004,
46     pages = {139-149},
47     url = {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
48     publisher = ecmwf
49     }
50    
51 heimbach 1.1 @Article{adcroft97:_shaved_cells,
52     author = {Alistair Adcroft and Christopher Hill and John
53     Marshall},
54     title = {Representation of Topography by Shaved Cells in a
55     Height Coordinate Ocean Model},
56     journal = mwr,
57     year = 1997,
58     volume = 125,
59     number = 9,
60     pages = {2293--2315}
61     }
62    
63     @Article{adcroft99,
64     author = {Alistair Adcroft and Christopher Hill and John
65     Marshall},
66     title = {A New Treatment of the {C}oriolis Terms in {C}-Grid
67     Models at Both High and Low Resolutions},
68     journal = mwr,
69     year = 1999,
70     volume = 127,
71     pages = {1928--1936}
72     }
73    
74     @InProceedings{brugge91,
75     author = {Roger Brugge and Helen L. Jones and John
76     C. Marshall},
77     title = {Non-Hydrostatic Ocean Modeling for Studies of
78     Open-Ocean Deep Convection},
79     booktitle = {Deep Convection and Deep Water Formation in the
80     Ocean},
81     editor = {P. C. Chu and J. C. Gascard},
82     pages = {325--340},
83     year = 1991,
84     volume = 57,
85     series = {Elsevier Oceanogr. Ser.},
86     address = {New York},
87     publisher = {Elsevier Sci.}
88     }
89    
90     @Article{bryan84,
91     author = {Kirk Bryan},
92     title = {Accelerating the Convergence to Equilibrium of
93     Ocean-Climate Models},
94     journal = jpo,
95     year = 1984,
96     volume = 14,
97     number = 4,
98     pages = {1455--1471}
99     }
100    
101     @PhdThesis{bugnion01:_thesis,
102     author = {V{\'e}ronique Bugnion},
103     title = {Driving the Ocean's Overturning: An Adjoint
104     Sensitivity Study},
105     school = {MIT},
106     year = {2001},
107     OPTkey = {},
108     OPTtype = {},
109     OPTaddress = {},
110     OPTmonth = {},
111     OPTnote = {},
112     OPTannote = {}
113     }
114    
115     @Article{campin04,
116     author = {Jean-Michel Campin and Alistair Adcroft and
117     Christopher Hill and John Marshall},
118     title = {Conservation of Properties in a Free-Surface Model},
119     journal = omg,
120     year = 2004,
121     volume = {6},
122     number = {3--4},
123     pages = {221--244}
124     }
125    
126     @Article{danabasoglu96,
127     author = {Gokhan Danabasoglu and James C. McWilliams and
128     William G. Large},
129     title = {Approach to Equilibrium in Accelerated Global
130     Oceanic Models},
131     journal = jcl,
132     year = 1996,
133     volume = 9,
134     number = 5,
135     pages = {1092--1110}
136     }
137    
138     @Article{gent90,
139     author = {Peter R. Gent and James C. McWilliams},
140     title = {Isopycnal Mixing in Ocean Circulation Models},
141     journal = jpo,
142     year = 1990,
143     volume = 20,
144     number = 1,
145     pages = {150--155}
146     }
147    
148     @Article{gerdes91,
149     author = {R{\"u}diger Gerdes and Cornelia K{\"o}berle and
150     J{\"u}rgen Willebrand},
151     title = {The Influence of Numerical Advection Schemes on the
152     Results of Ocean General Circulation Models},
153     journal = cdyn,
154     year = 1991,
155     volume = 5,
156     pages = {211--226}
157     }
158    
159     @Incollection{heimbach02,
160     author = {Patrick Heimbach and Christopher Hill and Ralf
161     Giering},
162     title = {Automatic Generation of Efficient Adjoint Code for a
163     Parallel {N}avier-{S}tokes Solver},
164     booktitle = {Computational Science -- ICCS 2002},
165     publisher = {Springer-Verlag},
166     year = {2002},
167     editor = {{J.J. Dongarra, P.M.A. Sloot and C.J.K. Tan}},
168     volume = {2331, part 3},
169     series = {Lecture Notes in Computer Science},
170     pages = {1019-1028},
171     address = {Berlin (Germany)},
172     }
173    
174     @Incollectionu{heimbach03,
175     author = {Patrick Heimbach and Uwe Naumann},
176     title = {Coupling tangent-linear and adjoint models},
177     booktitle = {ICCS 2003},
178     publisher = {Springer-Verlag},
179     year = {2003},
180     editor = {{V. Kumar, M. Gavrilova, C.J.K. Tan, P. L'Ecuyer}},
181     volume = {2668, part II},
182     series = {Lecture Notes in Computer Science},
183     pages = {105--114},
184     address = {Berlin (Germany)},
185     }
186    
187     @Article{heimbach05,
188     author = {Patrick Heimbach and Christopher Hill and Ralf
189     Giering},
190     title = {An efficient exact adjoint of the parallel {MIT}
191     general circulation model, generated via automatic
192     differentiation},
193     journal = {Future Generation Computer Systems (FGCS)},
194     year = 2005,
195     volume = 21,
196     number = 8,
197     pages = {1356--1371},
198     doi = {10.1016/j.future.2004.11.010},
199     }
200     @Article{hill06,
201     author = {Chris Hill and Dimitris Menemenlis and Bob Ciotti
202     and Chri Henze},
203     title = {Investigating Solution Convergence in a Global Ocean
204     Model Using a 2048-Processor Cluster of Distributed
205     Shared Memory Machines},
206     journal = {Scientific Programming},
207     year = 2007,
208     volume = 12,
209     pages = {107--115}
210     }
211    
212     @Article{hill07,
213     author = {Chris Hill and Dimitris Menemenlis and Bob Ciotti
214     and Chri Henze},
215     title = {Investigating Solution Convergence in a Global Ocean
216     Model Using a 2048-Processor Cluster of Distributed
217     Shared Memory Machines},
218     journal = {Scientific Programming},
219     year = 2007,
220     volume = 12,
221     pages = {107--115}
222     }
223    
224     @Article{jones93,
225     author = {Helen L. Jones and John C. Marshall},
226     title = {Convection with Rotation in a Neutral Ocean: A Study
227     of Open-Ocean Deep Convection},
228     journal = jpo,
229     year = 1993,
230     volume = 23,
231     number = 6,
232     pages = {1009--1039}
233     }
234    
235     @Article{jones97,
236     author = {Helen L. Jones and John C. Marshall},
237     title = {Restratification after Deep Convection},
238     journal = jpo,
239     year = 1997,
240     volume = 27,
241     number = 10,
242     pages = {2276--2287}
243     }
244    
245     @Article{khatiwala03,
246     author = {Samar Khatiwala},
247     title = {Generation of Internal Tides in an Ocean of Finite
248     Depth: Analytical and Numerical Calculations},
249     journal = dsrone,
250     year = 2003,
251     volume = 50,
252     pages = {3--21}
253     }
254    
255 mlosch 1.2 @Article{khatiwala07,
256     author = {Samar Khatiwala},
257     title = {A Computational Framework for Simulation of
258     Biogeochemical Tracers in the Ocean},
259     year = 2007,
260     journal = gbc,
261     volume = 21,
262     doi = {10.1029/2007GB002923}
263     }
264    
265     @ARTICLE{khatiwala08,
266     author = {Samar Khatiwala},
267     title = {Fast Spin Up of Ocean Biogeochemical Models Using
268     Matrix-Free {Newton-Krylov} Methods},
269     year = 2008,
270     journal = omg,
271     volume = 23,
272     pages = {121--129},
273     doi = {10.1016/j.ocemod.2008.05.002}
274     }
275    
276 heimbach 1.1 @Article{large81,
277     author = {William G. Large and S. Pond},
278     title = {Open Ocean Momentum Flux Measurements in Moderate to
279     Strong Winds},
280     journal = jpo,
281     year = {1981},
282     volume = {11},
283     pages = {324--336},
284     }
285    
286     @Article{large82,
287     author = {William G. Large and S. Pond},
288     title = {Sensible and Latent Heat Flux Measurements over the
289     Ocean},
290     journal = jpo,
291     year = {1982},
292     volume = {12},
293     pages = {464--482},
294     }
295    
296     @Article{large94,
297     author = {Large, W. G. and J. C. McWilliams and S. C. Doney},
298     title = {Oceanic Vertical Mixing: A Review and a Model with a
299     Nonlocal Boundary Layer Parameterization},
300     journal = rgeo,
301     year = 1994,
302     volume = 32,
303     number = 4,
304     pages = {363--404}
305     }
306    
307     @Article{large97,
308     author = {William G. Large and Gokhan Danabasoglu and Scott
309     C. Doney and James C. McWilliams},
310     title = {Sensitivity of Surface Forcing and Boundary Layer
311     Mixing in a Global Ocean Model: Annual-Mean
312     Climatology},
313     journal = jpo,
314     year = 1997,
315     volume = 27,
316     number = 11,
317     pages = {2418--2447}
318     }
319    
320     @Article{legg03,
321     author = {Sonya Legg and Alistair Adcroft},
322     title = {Internal Wave Breaking on Concave and Convex
323     Continental Slopes},
324     journal = jpo,
325     year = 2003,
326     volume = 33,
327     number = 11,
328     pages = {2224-2246}
329     }
330    
331     @Article{marotzke99:_construction_adjoint_mitgcm,
332     author = {Jochem Marotzke and Ralf Giering and Kate Q. Zang
333     and Detlef Stammer and Christopher Hill and Tong
334     Lee},
335     title = {Construction of the Adjoint {MIT} Ocean General
336     Circulation Model and Application to {A}tlantic Heat
337     Transport Sensitivity},
338     journal = jgr,
339     year = 1999,
340     volume = 104,
341     number = {C12},
342     pages = {29529--29547}
343     }
344    
345     @Article{marshall04:_isomorphism,
346     author = {John Marshall and Alistair Adcroft and Jean-Michel
347     Campin and Christopher Hill and Andy White},
348     title = {Atmosphere-Ocean Modeling Exploiting Fluid
349     Isomorphisms},
350     journal = mwr,
351     year = 2004,
352     volume = 132,
353     number = 12,
354     pages = {2882--2994}
355     }
356    
357 cnh 1.4 @Article{marshall97:_hydros_quasi_hydros_nonhy,
358     author = {John Marshall and Christopher Hill and Lev Perelman
359     and Alistair Adcroft},
360     title = {Hydrostatic, Quasi-Hydrostatic, and Nonhydrostatic
361     Ocean Modeling},
362     journal = jgr,
363     year = 1997,
364     volume = 102,
365     number = {C3},
366     pages = {5733--5752}
367     }
368    
369 heimbach 1.1 @Article{marshall97:_finit_volum_incom_navier_stokes,
370     author = {John Marshall and Alistair Adcroft and Christopher
371     Hill and Lev Perelman and Curt Heisey},
372     title = {A Finite-Volume, Incompressible {N}avier {S}tokes
373     Model for Studies of the Ocean on Parallel
374     Computers},
375     journal = jgr,
376     year = 1997,
377     volume = 102,
378     number = {C3},
379     pages = {5753--5766}
380     }
381    
382     @Article{marshall98,
383     author = {John Marshall and Helen Jones and Christopher Hill},
384     title = {Efficient Ocean Modeling Using Non-Hydrostatic
385     Algorithms},
386     journal = jms,
387     year = 1998,
388     volume = 18,
389     number = {1--3},
390     pages = {115--134}
391     }
392    
393     @ARTICLE{menemenlis05,
394     author = {D. Menemenlis and C. Hill and A. Adcroft and
395     J.-M. Campin and B. Cheng and B. Ciotti and
396     I. Fukumori and A. Koehl and P. Heimbach and
397     C. Henze and T. Lee and D. Stammer and J. Taft and
398     J. Zhang},
399     title = {{NASA} Supercomputer Improves Prospects for Ocean
400     Climate Research},
401     journal = eos,
402     year = 2005,
403     volume = 86,
404     number = 9,
405     pages = {89, 95--96}
406     }
407    
408 mlosch 1.2 @Article{merlis08,
409     author = {T. M. Merlis and Samar Khatiwala},
410     title = {Fast Dynamical Spin-Up of Ocean General Circulation
411     Models Using {N}ewton-{K}rylov Methods},
412     year = 2008,
413     journal = omg,
414     volume = 21,
415     pages = {97--105},
416     doi = {10.1016/j.ocemod.2007.12.001}
417     }
418    
419 heimbach 1.1 @Techreport{mitgcm02,
420     author = {{MITgcm~Group}},
421     title = {{MITgcm} {R}elease 1 {M}anual},
422     institution = {{MIT}/{EAPS}},
423     year = {2002},
424     type = {Online documentation},
425     OPTnumber = {~},
426     address = {Cambridge, MA 02139, USA},
427     note = {{\url{http://mitgcm.org/sealion/online_documents/manual.html}}},
428     }
429    
430     @TechReport{stammer97:_global_ocean_circul_estim_topex,
431     author = {Detlef Stammer and Carl Wunsch and Ralf Giering and
432     Qian Zhang and Jochem Marotzke and John Marshall and
433     Christopher Hill},
434     title = {The Global Ocean Circulation Estimated from
435     {TOPEX}/{POSEIDON} Altimetry and the {MIT} General
436     Circulation Model},
437     institution = {Massachusetts Institute of Technology},
438     year = 1997,
439     type = {Center for Global Change Science Report},
440     number = 49,
441     address = {Cambridge, MA 02139}
442     }
443    
444     @Article{visbeck96,
445     author = {Martin Visbeck and John Marshall and Helen Jones},
446     title = {Dynamics of Isolated Convective Regions in the
447     Ocean},
448     journal = jpo,
449     year = 1996,
450     volume = 26,
451     number = 9,
452     pages = {1721--1734}
453     }
454    
455     @Article{wardle00,
456     author = {Richard Wardle and John Marshall},
457     title = {Representation of Eddies in Primitive Equation
458     Models by a {PV} Flux},
459     journal = jpo,
460     year = 2000,
461     volume = 30,
462     number = 10,
463     pages = {2481--2503}
464     }

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