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1 heimbach 1.1 @Techreport{adcroft02,
2     author = {Alistair Adcroft and Jean-Michel Campin and Patrick
3     Heimbach and Christopher Hill and John Marshall},
4     title = {{MITgcm} {R}elease 1 {M}anual},
5     institution = {{MIT}/{EAPS}},
6     year = {2002},
7     type = {Online documentation},
8     number = {~},
9     address = {Cambridge, MA 02139, USA},
10     note =
11     {{\url{http://mitgcm.org/sealion/online_documents/manual.html}}},
12     }
13    
14     @Article{adcroft04,
15     author = {Alistair Adcroft and Jean-Michel Campin},
16     title = {Rescaled Height Coordinates for Accurate
17     Representation of Free-Surface Flows in Ocean
18     Circulation Models},
19     journal = omg,
20     year = 2004,
21     volume = 7,
22     number = {3-4},
23     pages = {269--284}
24     }
25    
26     @Article{adcroft04:_cubed_sphere,
27     author = {Alistair Adcroft and Jean-Michel Campin and
28     Christopher N. Hill and John C. Marshall},
29     title = {Implementation of an Atmosphere-Ocean General
30     Circulation Model on the Expanded Spherical Cube},
31     journal = mwr,
32     year = 2004,
33     volume = 132,
34     number = 12,
35     pages = {2845--2863}
36     }
37    
38     @Article{adcroft97:_shaved_cells,
39     author = {Alistair Adcroft and Christopher Hill and John
40     Marshall},
41     title = {Representation of Topography by Shaved Cells in a
42     Height Coordinate Ocean Model},
43     journal = mwr,
44     year = 1997,
45     volume = 125,
46     number = 9,
47     pages = {2293--2315}
48     }
49    
50     @Article{adcroft99,
51     author = {Alistair Adcroft and Christopher Hill and John
52     Marshall},
53     title = {A New Treatment of the {C}oriolis Terms in {C}-Grid
54     Models at Both High and Low Resolutions},
55     journal = mwr,
56     year = 1999,
57     volume = 127,
58     pages = {1928--1936}
59     }
60    
61     @InProceedings{brugge91,
62     author = {Roger Brugge and Helen L. Jones and John
63     C. Marshall},
64     title = {Non-Hydrostatic Ocean Modeling for Studies of
65     Open-Ocean Deep Convection},
66     booktitle = {Deep Convection and Deep Water Formation in the
67     Ocean},
68     editor = {P. C. Chu and J. C. Gascard},
69     pages = {325--340},
70     year = 1991,
71     volume = 57,
72     series = {Elsevier Oceanogr. Ser.},
73     address = {New York},
74     publisher = {Elsevier Sci.}
75     }
76    
77     @Article{bryan84,
78     author = {Kirk Bryan},
79     title = {Accelerating the Convergence to Equilibrium of
80     Ocean-Climate Models},
81     journal = jpo,
82     year = 1984,
83     volume = 14,
84     number = 4,
85     pages = {1455--1471}
86     }
87    
88     @PhdThesis{bugnion01:_thesis,
89     author = {V{\'e}ronique Bugnion},
90     title = {Driving the Ocean's Overturning: An Adjoint
91     Sensitivity Study},
92     school = {MIT},
93     year = {2001},
94     OPTkey = {},
95     OPTtype = {},
96     OPTaddress = {},
97     OPTmonth = {},
98     OPTnote = {},
99     OPTannote = {}
100     }
101    
102     @Article{campin04,
103     author = {Jean-Michel Campin and Alistair Adcroft and
104     Christopher Hill and John Marshall},
105     title = {Conservation of Properties in a Free-Surface Model},
106     journal = omg,
107     year = 2004,
108     volume = {6},
109     number = {3--4},
110     pages = {221--244}
111     }
112    
113     @Article{danabasoglu96,
114     author = {Gokhan Danabasoglu and James C. McWilliams and
115     William G. Large},
116     title = {Approach to Equilibrium in Accelerated Global
117     Oceanic Models},
118     journal = jcl,
119     year = 1996,
120     volume = 9,
121     number = 5,
122     pages = {1092--1110}
123     }
124    
125     @Article{gent90,
126     author = {Peter R. Gent and James C. McWilliams},
127     title = {Isopycnal Mixing in Ocean Circulation Models},
128     journal = jpo,
129     year = 1990,
130     volume = 20,
131     number = 1,
132     pages = {150--155}
133     }
134    
135     @Article{gerdes91,
136     author = {R{\"u}diger Gerdes and Cornelia K{\"o}berle and
137     J{\"u}rgen Willebrand},
138     title = {The Influence of Numerical Advection Schemes on the
139     Results of Ocean General Circulation Models},
140     journal = cdyn,
141     year = 1991,
142     volume = 5,
143     pages = {211--226}
144     }
145    
146     @Incollection{heimbach02,
147     author = {Patrick Heimbach and Christopher Hill and Ralf
148     Giering},
149     title = {Automatic Generation of Efficient Adjoint Code for a
150     Parallel {N}avier-{S}tokes Solver},
151     booktitle = {Computational Science -- ICCS 2002},
152     publisher = {Springer-Verlag},
153     year = {2002},
154     editor = {{J.J. Dongarra, P.M.A. Sloot and C.J.K. Tan}},
155     volume = {2331, part 3},
156     series = {Lecture Notes in Computer Science},
157     pages = {1019-1028},
158     address = {Berlin (Germany)},
159     }
160    
161     @Incollectionu{heimbach03,
162     author = {Patrick Heimbach and Uwe Naumann},
163     title = {Coupling tangent-linear and adjoint models},
164     booktitle = {ICCS 2003},
165     publisher = {Springer-Verlag},
166     year = {2003},
167     editor = {{V. Kumar, M. Gavrilova, C.J.K. Tan, P. L'Ecuyer}},
168     volume = {2668, part II},
169     series = {Lecture Notes in Computer Science},
170     pages = {105--114},
171     address = {Berlin (Germany)},
172     }
173    
174     @Article{heimbach05,
175     author = {Patrick Heimbach and Christopher Hill and Ralf
176     Giering},
177     title = {An efficient exact adjoint of the parallel {MIT}
178     general circulation model, generated via automatic
179     differentiation},
180     journal = {Future Generation Computer Systems (FGCS)},
181     year = 2005,
182     volume = 21,
183     number = 8,
184     pages = {1356--1371},
185     doi = {10.1016/j.future.2004.11.010},
186     }
187     @Article{hill06,
188     author = {Chris Hill and Dimitris Menemenlis and Bob Ciotti
189     and Chri Henze},
190     title = {Investigating Solution Convergence in a Global Ocean
191     Model Using a 2048-Processor Cluster of Distributed
192     Shared Memory Machines},
193     journal = {Scientific Programming},
194     year = 2007,
195     volume = 12,
196     pages = {107--115}
197     }
198    
199     @Article{hill07,
200     author = {Chris Hill and Dimitris Menemenlis and Bob Ciotti
201     and Chri Henze},
202     title = {Investigating Solution Convergence in a Global Ocean
203     Model Using a 2048-Processor Cluster of Distributed
204     Shared Memory Machines},
205     journal = {Scientific Programming},
206     year = 2007,
207     volume = 12,
208     pages = {107--115}
209     }
210    
211     @Article{jones93,
212     author = {Helen L. Jones and John C. Marshall},
213     title = {Convection with Rotation in a Neutral Ocean: A Study
214     of Open-Ocean Deep Convection},
215     journal = jpo,
216     year = 1993,
217     volume = 23,
218     number = 6,
219     pages = {1009--1039}
220     }
221    
222     @Article{jones97,
223     author = {Helen L. Jones and John C. Marshall},
224     title = {Restratification after Deep Convection},
225     journal = jpo,
226     year = 1997,
227     volume = 27,
228     number = 10,
229     pages = {2276--2287}
230     }
231    
232     @Article{khatiwala03,
233     author = {Samar Khatiwala},
234     title = {Generation of Internal Tides in an Ocean of Finite
235     Depth: Analytical and Numerical Calculations},
236     journal = dsrone,
237     year = 2003,
238     volume = 50,
239     pages = {3--21}
240     }
241    
242 mlosch 1.2 @Article{khatiwala07,
243     author = {Samar Khatiwala},
244     title = {A Computational Framework for Simulation of
245     Biogeochemical Tracers in the Ocean},
246     year = 2007,
247     journal = gbc,
248     volume = 21,
249     doi = {10.1029/2007GB002923}
250     }
251    
252     @ARTICLE{khatiwala08,
253     author = {Samar Khatiwala},
254     title = {Fast Spin Up of Ocean Biogeochemical Models Using
255     Matrix-Free {Newton-Krylov} Methods},
256     year = 2008,
257     journal = omg,
258     volume = 23,
259     pages = {121--129},
260     doi = {10.1016/j.ocemod.2008.05.002}
261     }
262    
263 heimbach 1.1 @Article{large81,
264     author = {William G. Large and S. Pond},
265     title = {Open Ocean Momentum Flux Measurements in Moderate to
266     Strong Winds},
267     journal = jpo,
268     year = {1981},
269     volume = {11},
270     pages = {324--336},
271     }
272    
273     @Article{large82,
274     author = {William G. Large and S. Pond},
275     title = {Sensible and Latent Heat Flux Measurements over the
276     Ocean},
277     journal = jpo,
278     year = {1982},
279     volume = {12},
280     pages = {464--482},
281     }
282    
283     @Article{large94,
284     author = {Large, W. G. and J. C. McWilliams and S. C. Doney},
285     title = {Oceanic Vertical Mixing: A Review and a Model with a
286     Nonlocal Boundary Layer Parameterization},
287     journal = rgeo,
288     year = 1994,
289     volume = 32,
290     number = 4,
291     pages = {363--404}
292     }
293    
294     @Article{large97,
295     author = {William G. Large and Gokhan Danabasoglu and Scott
296     C. Doney and James C. McWilliams},
297     title = {Sensitivity of Surface Forcing and Boundary Layer
298     Mixing in a Global Ocean Model: Annual-Mean
299     Climatology},
300     journal = jpo,
301     year = 1997,
302     volume = 27,
303     number = 11,
304     pages = {2418--2447}
305     }
306    
307     @Article{legg03,
308     author = {Sonya Legg and Alistair Adcroft},
309     title = {Internal Wave Breaking on Concave and Convex
310     Continental Slopes},
311     journal = jpo,
312     year = 2003,
313     volume = 33,
314     number = 11,
315     pages = {2224-2246}
316     }
317    
318     @Article{marotzke99:_construction_adjoint_mitgcm,
319     author = {Jochem Marotzke and Ralf Giering and Kate Q. Zang
320     and Detlef Stammer and Christopher Hill and Tong
321     Lee},
322     title = {Construction of the Adjoint {MIT} Ocean General
323     Circulation Model and Application to {A}tlantic Heat
324     Transport Sensitivity},
325     journal = jgr,
326     year = 1999,
327     volume = 104,
328     number = {C12},
329     pages = {29529--29547}
330     }
331    
332     @Article{marshall04:_isomorphism,
333     author = {John Marshall and Alistair Adcroft and Jean-Michel
334     Campin and Christopher Hill and Andy White},
335     title = {Atmosphere-Ocean Modeling Exploiting Fluid
336     Isomorphisms},
337     journal = mwr,
338     year = 2004,
339     volume = 132,
340     number = 12,
341     pages = {2882--2994}
342     }
343    
344     @Article{marshall97:_finit_volum_incom_navier_stokes,
345     author = {John Marshall and Alistair Adcroft and Christopher
346     Hill and Lev Perelman and Curt Heisey},
347     title = {A Finite-Volume, Incompressible {N}avier {S}tokes
348     Model for Studies of the Ocean on Parallel
349     Computers},
350     journal = jgr,
351     year = 1997,
352     volume = 102,
353     number = {C3},
354     pages = {5753--5766}
355     }
356    
357     @Article{marshall97:_hydros_quasi_hydros_nonhy,
358     author = {John Marshall and Christopher Hill and Lev Perelman
359     and Alistair Adcroft},
360     title = {Hydrostatic, Quasi-Hydrostatic, and Nonhydrostatic
361     Ocean Modeling},
362     journal = jgr,
363     year = 1997,
364     volume = 102,
365     number = {C3},
366     pages = {5733--5752}
367     }
368    
369     @Article{marshall98,
370     author = {John Marshall and Helen Jones and Christopher Hill},
371     title = {Efficient Ocean Modeling Using Non-Hydrostatic
372     Algorithms},
373     journal = jms,
374     year = 1998,
375     volume = 18,
376     number = {1--3},
377     pages = {115--134}
378     }
379    
380     @ARTICLE{menemenlis05,
381     author = {D. Menemenlis and C. Hill and A. Adcroft and
382     J.-M. Campin and B. Cheng and B. Ciotti and
383     I. Fukumori and A. Koehl and P. Heimbach and
384     C. Henze and T. Lee and D. Stammer and J. Taft and
385     J. Zhang},
386     title = {{NASA} Supercomputer Improves Prospects for Ocean
387     Climate Research},
388     journal = eos,
389     year = 2005,
390     volume = 86,
391     number = 9,
392     pages = {89, 95--96}
393     }
394    
395 mlosch 1.2 @Article{merlis08,
396     author = {T. M. Merlis and Samar Khatiwala},
397     title = {Fast Dynamical Spin-Up of Ocean General Circulation
398     Models Using {N}ewton-{K}rylov Methods},
399     year = 2008,
400     journal = omg,
401     volume = 21,
402     pages = {97--105},
403     doi = {10.1016/j.ocemod.2007.12.001}
404     }
405    
406 heimbach 1.1 @Techreport{mitgcm02,
407     author = {{MITgcm~Group}},
408     title = {{MITgcm} {R}elease 1 {M}anual},
409     institution = {{MIT}/{EAPS}},
410     year = {2002},
411     type = {Online documentation},
412     OPTnumber = {~},
413     address = {Cambridge, MA 02139, USA},
414     note = {{\url{http://mitgcm.org/sealion/online_documents/manual.html}}},
415     }
416    
417     @TechReport{stammer97:_global_ocean_circul_estim_topex,
418     author = {Detlef Stammer and Carl Wunsch and Ralf Giering and
419     Qian Zhang and Jochem Marotzke and John Marshall and
420     Christopher Hill},
421     title = {The Global Ocean Circulation Estimated from
422     {TOPEX}/{POSEIDON} Altimetry and the {MIT} General
423     Circulation Model},
424     institution = {Massachusetts Institute of Technology},
425     year = 1997,
426     type = {Center for Global Change Science Report},
427     number = 49,
428     address = {Cambridge, MA 02139}
429     }
430    
431     @Article{visbeck96,
432     author = {Martin Visbeck and John Marshall and Helen Jones},
433     title = {Dynamics of Isolated Convective Regions in the
434     Ocean},
435     journal = jpo,
436     year = 1996,
437     volume = 26,
438     number = 9,
439     pages = {1721--1734}
440     }
441    
442     @Article{wardle00,
443     author = {Richard Wardle and John Marshall},
444     title = {Representation of Eddies in Primitive Equation
445     Models by a {PV} Flux},
446     journal = jpo,
447     year = 2000,
448     volume = 30,
449     number = 10,
450     pages = {2481--2503}
451     }

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