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Wed Nov 19 16:35:39 2008 UTC (16 years, 8 months ago) by mlosch
Branch: MAIN
Changes since 1.1: +32 -1 lines
add a reference to Kwok et al 2008 and many others not relevant to our
paper

1 heimbach 1.1 @Techreport{adcroft02,
2     author = {Alistair Adcroft and Jean-Michel Campin and Patrick
3     Heimbach and Christopher Hill and John Marshall},
4     title = {{MITgcm} {R}elease 1 {M}anual},
5     institution = {{MIT}/{EAPS}},
6     year = {2002},
7     type = {Online documentation},
8     number = {~},
9     address = {Cambridge, MA 02139, USA},
10     note =
11     {{\url{http://mitgcm.org/sealion/online_documents/manual.html}}},
12     }
13    
14     @Article{adcroft04,
15     author = {Alistair Adcroft and Jean-Michel Campin},
16     title = {Rescaled Height Coordinates for Accurate
17     Representation of Free-Surface Flows in Ocean
18     Circulation Models},
19     journal = omg,
20     year = 2004,
21     volume = 7,
22     number = {3-4},
23     pages = {269--284}
24     }
25    
26     @Article{adcroft04:_cubed_sphere,
27     author = {Alistair Adcroft and Jean-Michel Campin and
28     Christopher N. Hill and John C. Marshall},
29     title = {Implementation of an Atmosphere-Ocean General
30     Circulation Model on the Expanded Spherical Cube},
31     journal = mwr,
32     year = 2004,
33     volume = 132,
34     number = 12,
35     pages = {2845--2863}
36     }
37    
38     @Article{adcroft97:_shaved_cells,
39     author = {Alistair Adcroft and Christopher Hill and John
40     Marshall},
41     title = {Representation of Topography by Shaved Cells in a
42     Height Coordinate Ocean Model},
43     journal = mwr,
44     year = 1997,
45     volume = 125,
46     number = 9,
47     pages = {2293--2315}
48     }
49    
50     @Article{adcroft99,
51     author = {Alistair Adcroft and Christopher Hill and John
52     Marshall},
53     title = {A New Treatment of the {C}oriolis Terms in {C}-Grid
54     Models at Both High and Low Resolutions},
55     journal = mwr,
56     year = 1999,
57     volume = 127,
58     pages = {1928--1936}
59     }
60    
61     @InProceedings{brugge91,
62     author = {Roger Brugge and Helen L. Jones and John
63     C. Marshall},
64     title = {Non-Hydrostatic Ocean Modeling for Studies of
65     Open-Ocean Deep Convection},
66     booktitle = {Deep Convection and Deep Water Formation in the
67     Ocean},
68     editor = {P. C. Chu and J. C. Gascard},
69     pages = {325--340},
70     year = 1991,
71     volume = 57,
72     series = {Elsevier Oceanogr. Ser.},
73     address = {New York},
74     publisher = {Elsevier Sci.}
75     }
76    
77     @Article{bryan84,
78     author = {Kirk Bryan},
79     title = {Accelerating the Convergence to Equilibrium of
80     Ocean-Climate Models},
81     journal = jpo,
82     year = 1984,
83     volume = 14,
84     number = 4,
85     pages = {1455--1471}
86     }
87    
88     @PhdThesis{bugnion01:_thesis,
89     author = {V{\'e}ronique Bugnion},
90     title = {Driving the Ocean's Overturning: An Adjoint
91     Sensitivity Study},
92     school = {MIT},
93     year = {2001},
94     OPTkey = {},
95     OPTtype = {},
96     OPTaddress = {},
97     OPTmonth = {},
98     OPTnote = {},
99     OPTannote = {}
100     }
101    
102     @Article{campin04,
103     author = {Jean-Michel Campin and Alistair Adcroft and
104     Christopher Hill and John Marshall},
105     title = {Conservation of Properties in a Free-Surface Model},
106     journal = omg,
107     year = 2004,
108     volume = {6},
109     number = {3--4},
110     pages = {221--244}
111     }
112    
113     @Article{danabasoglu96,
114     author = {Gokhan Danabasoglu and James C. McWilliams and
115     William G. Large},
116     title = {Approach to Equilibrium in Accelerated Global
117     Oceanic Models},
118     journal = jcl,
119     year = 1996,
120     volume = 9,
121     number = 5,
122     pages = {1092--1110}
123     }
124    
125     @Article{gent90,
126     author = {Peter R. Gent and James C. McWilliams},
127     title = {Isopycnal Mixing in Ocean Circulation Models},
128     journal = jpo,
129     year = 1990,
130     volume = 20,
131     number = 1,
132     pages = {150--155}
133     }
134    
135     @Article{gerdes91,
136     author = {R{\"u}diger Gerdes and Cornelia K{\"o}berle and
137     J{\"u}rgen Willebrand},
138     title = {The Influence of Numerical Advection Schemes on the
139     Results of Ocean General Circulation Models},
140     journal = cdyn,
141     year = 1991,
142     volume = 5,
143     pages = {211--226}
144     }
145    
146     @Incollection{heimbach02,
147     author = {Patrick Heimbach and Christopher Hill and Ralf
148     Giering},
149     title = {Automatic Generation of Efficient Adjoint Code for a
150     Parallel {N}avier-{S}tokes Solver},
151     booktitle = {Computational Science -- ICCS 2002},
152     publisher = {Springer-Verlag},
153     year = {2002},
154     editor = {{J.J. Dongarra, P.M.A. Sloot and C.J.K. Tan}},
155     volume = {2331, part 3},
156     series = {Lecture Notes in Computer Science},
157     pages = {1019-1028},
158     address = {Berlin (Germany)},
159     }
160    
161     @Incollectionu{heimbach03,
162     author = {Patrick Heimbach and Uwe Naumann},
163     title = {Coupling tangent-linear and adjoint models},
164     booktitle = {ICCS 2003},
165     publisher = {Springer-Verlag},
166     year = {2003},
167     editor = {{V. Kumar, M. Gavrilova, C.J.K. Tan, P. L'Ecuyer}},
168     volume = {2668, part II},
169     series = {Lecture Notes in Computer Science},
170     pages = {105--114},
171     address = {Berlin (Germany)},
172     }
173    
174     @Article{heimbach05,
175     author = {Patrick Heimbach and Christopher Hill and Ralf
176     Giering},
177     title = {An efficient exact adjoint of the parallel {MIT}
178     general circulation model, generated via automatic
179     differentiation},
180     journal = {Future Generation Computer Systems (FGCS)},
181     year = 2005,
182     volume = 21,
183     number = 8,
184     pages = {1356--1371},
185     doi = {10.1016/j.future.2004.11.010},
186     }
187     @Article{hill06,
188     author = {Chris Hill and Dimitris Menemenlis and Bob Ciotti
189     and Chri Henze},
190     title = {Investigating Solution Convergence in a Global Ocean
191     Model Using a 2048-Processor Cluster of Distributed
192     Shared Memory Machines},
193     journal = {Scientific Programming},
194     year = 2007,
195     volume = 12,
196     pages = {107--115}
197     }
198    
199     @Article{hill06b,
200     author = {Chris Hill and Dimitris Menemenlis and Bob Ciotti
201     and Chri Henze},
202     title = {Are We There Yet? {I}nvestigating Solution
203     Convergence in a High-Resolution Global Ocean Model
204     with a 2048 Processor Cluster of Distributed Shared
205     Memory {SGI Altix} Machines},
206     journal = tocs,
207     year = {2006},
208     OPTkey = {},
209     volume = {{$\!$}, submitted},
210     OPTnumber = {},
211     OPTpages = {},
212     OPTmonth = {},
213     OPTnote = {},
214     OPTannote = {}
215     }
216    
217     @Article{hill07,
218     author = {Chris Hill and Dimitris Menemenlis and Bob Ciotti
219     and Chri Henze},
220     title = {Investigating Solution Convergence in a Global Ocean
221     Model Using a 2048-Processor Cluster of Distributed
222     Shared Memory Machines},
223     journal = {Scientific Programming},
224     year = 2007,
225     volume = 12,
226     pages = {107--115}
227     }
228    
229     @Article{jones93,
230     author = {Helen L. Jones and John C. Marshall},
231     title = {Convection with Rotation in a Neutral Ocean: A Study
232     of Open-Ocean Deep Convection},
233     journal = jpo,
234     year = 1993,
235     volume = 23,
236     number = 6,
237     pages = {1009--1039}
238     }
239    
240     @Article{jones97,
241     author = {Helen L. Jones and John C. Marshall},
242     title = {Restratification after Deep Convection},
243     journal = jpo,
244     year = 1997,
245     volume = 27,
246     number = 10,
247     pages = {2276--2287}
248     }
249    
250     @Article{khatiwala03,
251     author = {Samar Khatiwala},
252     title = {Generation of Internal Tides in an Ocean of Finite
253     Depth: Analytical and Numerical Calculations},
254     journal = dsrone,
255     year = 2003,
256     volume = 50,
257     pages = {3--21}
258     }
259    
260 mlosch 1.2 @Article{khatiwala07,
261     author = {Samar Khatiwala},
262     title = {A Computational Framework for Simulation of
263     Biogeochemical Tracers in the Ocean},
264     year = 2007,
265     journal = gbc,
266     volume = 21,
267     doi = {10.1029/2007GB002923}
268     }
269    
270     @ARTICLE{khatiwala08,
271     author = {Samar Khatiwala},
272     title = {Fast Spin Up of Ocean Biogeochemical Models Using
273     Matrix-Free {Newton-Krylov} Methods},
274     year = 2008,
275     journal = omg,
276     volume = 23,
277     pages = {121--129},
278     doi = {10.1016/j.ocemod.2008.05.002}
279     }
280    
281 heimbach 1.1 @Article{large81,
282     author = {William G. Large and S. Pond},
283     title = {Open Ocean Momentum Flux Measurements in Moderate to
284     Strong Winds},
285     journal = jpo,
286     year = {1981},
287     volume = {11},
288     pages = {324--336},
289     }
290    
291     @Article{large82,
292     author = {William G. Large and S. Pond},
293     title = {Sensible and Latent Heat Flux Measurements over the
294     Ocean},
295     journal = jpo,
296     year = {1982},
297     volume = {12},
298     pages = {464--482},
299     }
300    
301     @Article{large94,
302     author = {Large, W. G. and J. C. McWilliams and S. C. Doney},
303     title = {Oceanic Vertical Mixing: A Review and a Model with a
304     Nonlocal Boundary Layer Parameterization},
305     journal = rgeo,
306     year = 1994,
307     volume = 32,
308     number = 4,
309     pages = {363--404}
310     }
311    
312     @Article{large97,
313     author = {William G. Large and Gokhan Danabasoglu and Scott
314     C. Doney and James C. McWilliams},
315     title = {Sensitivity of Surface Forcing and Boundary Layer
316     Mixing in a Global Ocean Model: Annual-Mean
317     Climatology},
318     journal = jpo,
319     year = 1997,
320     volume = 27,
321     number = 11,
322     pages = {2418--2447}
323     }
324    
325     @Article{legg03,
326     author = {Sonya Legg and Alistair Adcroft},
327     title = {Internal Wave Breaking on Concave and Convex
328     Continental Slopes},
329     journal = jpo,
330     year = 2003,
331     volume = 33,
332     number = 11,
333     pages = {2224-2246}
334     }
335    
336     @Article{marotzke99:_construction_adjoint_mitgcm,
337     author = {Jochem Marotzke and Ralf Giering and Kate Q. Zang
338     and Detlef Stammer and Christopher Hill and Tong
339     Lee},
340     title = {Construction of the Adjoint {MIT} Ocean General
341     Circulation Model and Application to {A}tlantic Heat
342     Transport Sensitivity},
343     journal = jgr,
344     year = 1999,
345     volume = 104,
346     number = {C12},
347     pages = {29529--29547}
348     }
349    
350     @Article{marshall04:_isomorphism,
351     author = {John Marshall and Alistair Adcroft and Jean-Michel
352     Campin and Christopher Hill and Andy White},
353     title = {Atmosphere-Ocean Modeling Exploiting Fluid
354     Isomorphisms},
355     journal = mwr,
356     year = 2004,
357     volume = 132,
358     number = 12,
359     pages = {2882--2994}
360     }
361    
362     @Article{marshall97:_finit_volum_incom_navier_stokes,
363     author = {John Marshall and Alistair Adcroft and Christopher
364     Hill and Lev Perelman and Curt Heisey},
365     title = {A Finite-Volume, Incompressible {N}avier {S}tokes
366     Model for Studies of the Ocean on Parallel
367     Computers},
368     journal = jgr,
369     year = 1997,
370     volume = 102,
371     number = {C3},
372     pages = {5753--5766}
373     }
374    
375     @Article{marshall97:_hydros_quasi_hydros_nonhy,
376     author = {John Marshall and Christopher Hill and Lev Perelman
377     and Alistair Adcroft},
378     title = {Hydrostatic, Quasi-Hydrostatic, and Nonhydrostatic
379     Ocean Modeling},
380     journal = jgr,
381     year = 1997,
382     volume = 102,
383     number = {C3},
384     pages = {5733--5752}
385     }
386    
387     @Article{marshall98,
388     author = {John Marshall and Helen Jones and Christopher Hill},
389     title = {Efficient Ocean Modeling Using Non-Hydrostatic
390     Algorithms},
391     journal = jms,
392     year = 1998,
393     volume = 18,
394     number = {1--3},
395     pages = {115--134}
396     }
397    
398     @ARTICLE{menemenlis05,
399     author = {D. Menemenlis and C. Hill and A. Adcroft and
400     J.-M. Campin and B. Cheng and B. Ciotti and
401     I. Fukumori and A. Koehl and P. Heimbach and
402     C. Henze and T. Lee and D. Stammer and J. Taft and
403     J. Zhang},
404     title = {{NASA} Supercomputer Improves Prospects for Ocean
405     Climate Research},
406     journal = eos,
407     year = 2005,
408     volume = 86,
409     number = 9,
410     pages = {89, 95--96}
411     }
412    
413 mlosch 1.2 @Article{merlis08,
414     author = {T. M. Merlis and Samar Khatiwala},
415     title = {Fast Dynamical Spin-Up of Ocean General Circulation
416     Models Using {N}ewton-{K}rylov Methods},
417     year = 2008,
418     journal = omg,
419     volume = 21,
420     pages = {97--105},
421     doi = {10.1016/j.ocemod.2007.12.001}
422     }
423    
424 heimbach 1.1 @Techreport{mitgcm02,
425     author = {{MITgcm~Group}},
426     title = {{MITgcm} {R}elease 1 {M}anual},
427     institution = {{MIT}/{EAPS}},
428     year = {2002},
429     type = {Online documentation},
430     OPTnumber = {~},
431     address = {Cambridge, MA 02139, USA},
432     note = {{\url{http://mitgcm.org/sealion/online_documents/manual.html}}},
433     }
434    
435     @TechReport{stammer97:_global_ocean_circul_estim_topex,
436     author = {Detlef Stammer and Carl Wunsch and Ralf Giering and
437     Qian Zhang and Jochem Marotzke and John Marshall and
438     Christopher Hill},
439     title = {The Global Ocean Circulation Estimated from
440     {TOPEX}/{POSEIDON} Altimetry and the {MIT} General
441     Circulation Model},
442     institution = {Massachusetts Institute of Technology},
443     year = 1997,
444     type = {Center for Global Change Science Report},
445     number = 49,
446     address = {Cambridge, MA 02139}
447     }
448    
449     @Article{visbeck96,
450     author = {Martin Visbeck and John Marshall and Helen Jones},
451     title = {Dynamics of Isolated Convective Regions in the
452     Ocean},
453     journal = jpo,
454     year = 1996,
455     volume = 26,
456     number = 9,
457     pages = {1721--1734}
458     }
459    
460     @Article{wardle00,
461     author = {Richard Wardle and John Marshall},
462     title = {Representation of Eddies in Primitive Equation
463     Models by a {PV} Flux},
464     journal = jpo,
465     year = 2000,
466     volume = 30,
467     number = 10,
468     pages = {2481--2503}
469     }

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